CuGenDBv2

Gene ID	Lsi10G006090
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	50S ribosomal protein L20, chloroplastic
Genome location	chr10:8643670..8645621
RNA-Seq Expression	Lsi10G006090
Synteny	Lsi10G006090
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0015074 - DNA integration (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR005813 - Ribosomal protein L20 IPR022546 - Uncharacterised protein family Ycf68 IPR035566 - Ribosomal protein L20, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

CAA7013176.1 unnamed protein product [Microthlaspi erraticum]

8.0e-47

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Query:  SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDFSFMDVDKILPFNSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEML
        SV GL GGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYDFSFMDVDKI PF+STLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSDEML
Subjt:  SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDFSFMDVDKILPFNSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEML

CAA7021225.1 unnamed protein product [Microthlaspi erraticum]

8.0e-47

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Query:  SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDFSFMDVDKILPFNSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEML
        SV GL GGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYDFSFMDVDKI PF+STLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSDEML
Subjt:  SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDFSFMDVDKILPFNSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEML

CAD5336141.1 unnamed protein product [Arabidopsis thaliana]

8.0e-47

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Query:  SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDFSFMDVDKILPFNSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEML
        SV GL GGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYDFSFMDVDKI PF+STLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSDEML
Subjt:  SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDFSFMDVDKILPFNSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEML

CAD5336145.1 unnamed protein product [Arabidopsis thaliana]

8.0e-47

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Query:  SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDFSFMDVDKILPFNSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEML
        SV GL GGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYDFSFMDVDKI PF+STLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSDEML
Subjt:  SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDFSFMDVDKILPFNSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEML

KAG7528872.1 hypothetical protein ISN44_Un153g000040 [Arabidopsis suecica]

8.0e-47

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Query:  SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDFSFMDVDKILPFNSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEML
        SV GL GGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYDFSFMDVDKI PF+STLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSDEML
Subjt:  SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDFSFMDVDKILPFNSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEML

TrEMBL top hits

e value

%identity

Alignment

A0A2N9F5N4 Uncharacterized protein ycf68

9.3e-49

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Query:  SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDFSFMDVDKILPFNSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEML
        SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYD SFMDVDKILPF+STLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSDEML
Subjt:  SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDFSFMDVDKILPFNSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEML

A0A2N9HJU4 Uncharacterized protein ycf68

9.3e-49

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Query:  SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDFSFMDVDKILPFNSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEML
        SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYD SFMDVDKILPF+STLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSDEML
Subjt:  SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDFSFMDVDKILPFNSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEML

A0A2N9I366 Uncharacterized protein ycf68

9.3e-49

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Query:  SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDFSFMDVDKILPFNSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEML
        SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYD SFMDVDKILPF+STLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSDEML
Subjt:  SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDFSFMDVDKILPFNSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEML

A0A2N9I678 Uncharacterized protein ycf68

9.3e-49

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Query:  SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDFSFMDVDKILPFNSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEML
        SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYD SFMDVDKILPF+STLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSDEML
Subjt:  SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDFSFMDVDKILPFNSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEML

A0A2N9IA97 Uncharacterized protein ycf68

9.3e-49

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Query:  SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDFSFMDVDKILPFNSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEML
        SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYD SFMDVDKILPF+STLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSDEML
Subjt:  SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDFSFMDVDKILPFNSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEML

SwissProt top hits

e value

%identity

Alignment

A9L9B9 50S ribosomal protein L20, chloroplastic

1.5e-19

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Query:  IKRGNIARRRRTKICLFASSFRGAHSRLIRTITQQKIRALASAYRDRVRQKRNFRQLWIT
        +KRG IARRRRTKI LFASSFRGAHSRL RTITQQK+RAL SAYRDR RQKR+FR+LWIT
Subjt:  IKRGNIARRRRTKICLFASSFRGAHSRLIRTITQQKIRALASAYRDRVRQKRNFRQLWIT

Q0G9T9 50S ribosomal protein L20, chloroplastic

6.7e-20

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Query:  IKRGNIARRRRTKICLFASSFRGAHSRLIRTITQQKIRALASAYRDRVRQKRNFRQLWIT
        I+RGNIARRRRTKI LFASSFRGAHSRL RTITQQKIRAL S++RDR +QKRNFR+LWIT
Subjt:  IKRGNIARRRRTKICLFASSFRGAHSRLIRTITQQKIRALASAYRDRVRQKRNFRQLWIT

Q4VZJ4 50S ribosomal protein L20, chloroplastic

6.0e-21

93.22

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Query:  IKRGNIARRRRTKICLFASSFRGAHSRLIRTITQQKIRALASAYRDRVRQKRNFRQLWI
        IKRG IARRRRTKI LFASSFRGAHSRL RTITQQKIRALASAYRDR RQKRNFRQLWI
Subjt:  IKRGNIARRRRTKICLFASSFRGAHSRLIRTITQQKIRALASAYRDRVRQKRNFRQLWI

Q68RY3 50S ribosomal protein L20, chloroplastic

2.5e-19

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Query:  IKRGNIARRRRTKICLFASSFRGAHSRLIRTITQQKIRALASAYRDRVRQKRNFRQLWIT
        I+RG IARRRRTKI LFASSFRGAHSRL RTITQQKIRAL S++RDR RQKRNFR+LWIT
Subjt:  IKRGNIARRRRTKICLFASSFRGAHSRLIRTITQQKIRALASAYRDRVRQKRNFRQLWIT

Q7FNS5 50S ribosomal protein L20, chloroplastic

5.6e-19

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Query:  IKRGNIARRRRTKICLFASSFRGAHSRLIRTITQQKIRALASAYRDRVRQKRNFRQLWIT
        IKRG IARRRRTKI LFASSFRGAHSRL RTITQQKIRAL SA+RDR R+KR+FR+LWIT
Subjt:  IKRGNIARRRRTKICLFASSFRGAHSRLIRTITQQKIRALASAYRDRVRQKRNFRQLWIT

Arabidopsis top hits

e value

%identity

Alignment

ATCG00660.1 ribosomal protein L20

7.6e-19

78.33

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Query:  IKRGNIARRRRTKICLFASSFRGAHSRLIRTITQQKIRALASAYRDRVRQKRNFRQLWIT
        IKRG IARRRRTK+ LFASSFRGAHSRL RT+TQQ+IRAL SA+RDR ++KR+FR+LWIT
Subjt:  IKRGNIARRRRTKICLFASSFRGAHSRLIRTITQQKIRALASAYRDRVRQKRNFRQLWIT

Sequences

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CDS sequence

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TCAGTCGGGGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCTGCTTATCTCCAACTCGTGAACTTAGCCGATACAAAGCTATATGATAGCAC
TCCATTTTTCCGATTCGGCAGTTCGATCTATGATTTCTCATTCATGGACGTTGATAAGATCCTTCCATTTAACAGCACCTTAGGATGGCATAGCCTTAAAGTTAAGGGCG
AGGTTCAAACGAAGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCTGGTAGTCAGTGGTCTAATCCCGGATTTG
CGCATACATCTCACGGGTTTGCATTTGAACACTGAAAAACCAAGGGATCTCATGAAACCAGTTGGTATTAACAAATCTATACGGGTTGTTTACGGGCCGAGGAACGAGGA
CAAGCTCGGAGTCACACAAGCGGGAGCCCAAGATTCCGCTACAGCTATTGAAGTGAATGAATTAACCGACGGTAACTTAACAATAGCCACCAATAGTAGAGAGTGCTACT
TACTCAGGGTAGACATCGAAGGGCACAGTGTACTCCTACCCTATAGTATCGCTGTTGAGGAAGTTGCTTTAATCAAACGAGGAAATATAGCTCGGAGACGTAGAACAAAA
ATTTGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTGATTCGAACTATTACTCAACAGAAAATTAGAGCTTTGGCTTCAGCTTATCGGGATAGAGTTAGGCA
AAAAAGAAATTTTCGACAGTTGTGGATCACT

mRNA sequence

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Protein sequence

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SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDFSFMDVDKILPFNSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEMLLVVSGLIPDL
RIHLTGLHLNTEKPRDLMKPVGINKSIRVVYGPRNEDKLGVTQAGAQDSATAIEVNELTDGNLTIATNSRECYLLRVDIEGHSVLLPYSIAVEEVALIKRGNIARRRRTK
ICLFASSFRGAHSRLIRTITQQKIRALASAYRDRVRQKRNFRQLWIT

Lsi10G006090 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome