CuGenDBv2

Gene ID	Lsi10G006100
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	ORF43m
Genome location	chr10:8645970..8646419
RNA-Seq Expression	Lsi10G006100
Synteny	Lsi10G006100
Gene Ontology terms	GO:0006101 - citrate metabolic process (biological process) GO:0009507 - chloroplast (cellular component) GO:0004108 - citrate (Si)-synthase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

ERM97427.1 hypothetical protein AMTR_s02909p00006680 [Amborella trichopoda]

3.8e-29

92.96

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Query:  RTWTVAGVVGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGHL
        RTWTV GV GSLRVPSSGIPGEEDQVGPCEQLDA  PFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQG L
Subjt:  RTWTVAGVVGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGHL

KAF4348549.1 hypothetical protein F8388_000228 [Cannabis sativa]

3.8e-29

92.96

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Query:  RTWTVAGVVGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGHL
        RTWTV GV GSLRVPSSGIPGEEDQVGPCEQLDA  PFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQG L
Subjt:  RTWTVAGVVGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGHL

KAF4361765.1 hypothetical protein G4B88_012073 [Cannabis sativa]

8.4e-29

91.55

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Query:  RTWTVAGVVGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGHL
        RTWTV GV GSLRVPSSGIPGEEDQVGPCEQLDA  PFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQG +
Subjt:  RTWTVAGVVGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGHL

KAF9825362.1 hypothetical protein H0E87_005084, partial [Populus deltoides]

3.8e-29

92.96

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Query:  RTWTVAGVVGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGHL
        RTWTV GV GSLRVPSSGIPGEEDQVGPCEQLDA  PFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQG L
Subjt:  RTWTVAGVVGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGHL

QHE65624.1 ORF43m [Nitraria roborowskii]

3.8e-29

92.96

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Query:  RTWTVAGVVGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGHL
        RTWTV GV GSLRVPSSGIPGEEDQVGPCEQLDA  PFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQG L
Subjt:  RTWTVAGVVGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGHL

TrEMBL top hits

e value

%identity

Alignment

A0A6B9QF48 ORF43m

1.8e-29

92.96

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Query:  RTWTVAGVVGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGHL
        RTWTV GV GSLRVPSSGIPGEEDQVGPCEQLDA  PFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQG L
Subjt:  RTWTVAGVVGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGHL

A0A6B9QFK3 ORF43m

1.8e-29

92.96

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Query:  RTWTVAGVVGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGHL
        RTWTV GV GSLRVPSSGIPGEEDQVGPCEQLDA  PFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQG L
Subjt:  RTWTVAGVVGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGHL

A0A6B9QGL2 ORF43m

1.8e-29

92.96

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Query:  RTWTVAGVVGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGHL
        RTWTV GV GSLRVPSSGIPGEEDQVGPCEQLDA  PFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQG L
Subjt:  RTWTVAGVVGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGHL

A0A7J6DSE9 Uncharacterized protein ycf68

1.8e-29

92.96

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Query:  RTWTVAGVVGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGHL
        RTWTV GV GSLRVPSSGIPGEEDQVGPCEQLDA  PFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQG L
Subjt:  RTWTVAGVVGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGHL

U5CKY2 Uncharacterized protein

1.8e-29

92.96

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Query:  RTWTVAGVVGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGHL
        RTWTV GV GSLRVPSSGIPGEEDQVGPCEQLDA  PFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQG L
Subjt:  RTWTVAGVVGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGHL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGTACCTCAACCAGCTGAGCAAGGGACTACTATTGAAAGAACTCGTTGGGTTGCGTTAGACCGAACTCTAAAAGTAAACTTCAACGGGATCCGTACATGGACGGTAGC
TGGAGTCGTCGGCTCTCTTAGGGTTCCCTCATCTGGAATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACGAGATCCCTTCAACCCTTTGAGCG
AAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTTCACCCCGTAGGAACTACGAGATCACCCCAAGGACACCTTTAG

mRNA sequence

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Protein sequence

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MVPQPAEQGTTIERTRWVALDRTLKVNFNGIRTWTVAGVVGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGHL

Lsi10G006100 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome