; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G006320 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G006320
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRegulator of rDNA transcription protein 15
Genome locationchr10:8830009..8831718
RNA-Seq ExpressionLsi10G006320
SyntenyLsi10G006320
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF1855774.1 hypothetical protein Lal_00045041 [Lupinus albus]4.8e-1852Show/hide
Query:  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPR----GTTSG-------------------QWNN----VARAGRRVSTGGRTK
        T+ PE+GSSGWKST RR+VS APPAALEN EDRVPPT  RTHN IRSP       TSG                   +W       ARAGRRV  G    
Subjt:  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPR----GTTSG-------------------QWNN----VARAGRRVSTGGRTK

Query:  NGSVEGLPQASNNQLRTGMDKGNLT
         G    LP+ASN++LRTG DKGN T
Subjt:  NGSVEGLPQASNNQLRTGMDKGNLT

KAF3970676.1 hypothetical protein CMV_005638 [Castanea mollissima]2.7e-2164Show/hide
Query:  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIR-SPRG-TTSGQWNNVARAGRRVSTGGRTKNGSVEGLPQASNNQLRTGMDKGNLT
        T+ PE+GSSGWKST RR+VS APPAALEN EDRVPPT  RTHN I   P G   + +    ARAGRRV  GGRT N  + GLP+ASN++LRTG DKGN T
Subjt:  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIR-SPRG-TTSGQWNNVARAGRRVSTGGRTKNGSVEGLPQASNNQLRTGMDKGNLT

KAF7807774.1 atp synthase subunit beta [Senna tora]1.7e-2365.05Show/hide
Query:  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRGTTSG-QWN----NVARAGRRVSTGGRTKNGSVEGLPQASNNQLRTGMDKG
        T+ PE+GSSGWKST RR+VS APPAALEN EDRVPPT  RTHN IRSP     G +W       ARAGRRV  GGRT NG    LP+ASN++LRTG DKG
Subjt:  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRGTTSG-QWN----NVARAGRRVSTGGRTKNGSVEGLPQASNNQLRTGMDKG

Query:  NLT
        N T
Subjt:  NLT

PHT26582.1 Regulator of rDNA transcription protein 15 [Capsicum baccatum]1.0e-2049.63Show/hide
Query:  EIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRGTTSGQWNNV-----------------------------------------ARAG
        E+GSSGWKST RR+VS A PAALEN EDR+  T  RTHN IR PR +TSG+WNNV                                          RAG
Subjt:  EIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRGTTSGQWNNV-----------------------------------------ARAG

Query:  RRVSTGGRTKNGSVEGLPQASNNQLRTGMDKGNLT
        RRV  GGRT NGS   LP+ASN+QLRTG DKG+LT
Subjt:  RRVSTGGRTKNGSVEGLPQASNNQLRTGMDKGNLT

THU42864.1 hypothetical protein C4D60_Mb00t00560 [Musa balbisiana]1.3e-2058.18Show/hide
Query:  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRGTTSGQWNN------------VARAGRRVSTGGRTKNGSVEGLPQASNNQL
        T+ PE+GSSG KS  RR  S APPAALEN EDRVPP   RTHN IRSPR    G                 ARAGRRV  GGRT NG + GLP+ASN++L
Subjt:  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRGTTSGQWNN------------VARAGRRVSTGGRTKNGSVEGLPQASNNQL

Query:  RTGMDKGNLT
        RTG DKGN T
Subjt:  RTGMDKGNLT

TrEMBL top hitse value%identityAlignment
A0A0P1A454 Atp synthase subunit beta2.5e-1752.1Show/hide
Query:  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPT----SSRTHNHIRSPRG-------------TTSGQWN----NVARAGRRVSTGGRTKNGSVEG
        T+  E+GSSGWKST RR VS APPAALEN EDRVPPT     SR +  + S +G                 +W     + ARAG RV  GGRT NG   G
Subjt:  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPT----SSRTHNHIRSPRG-------------TTSGQWN----NVARAGRRVSTGGRTKNGSVEG

Query:  LPQASNNQLRTGMDKGNLT
        LP+ASN+QLRTG DKGN T
Subjt:  LPQASNNQLRTGMDKGNLT

A0A2G2V0S9 Regulator of rDNA transcription protein 155.0e-2149.63Show/hide
Query:  EIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRGTTSGQWNNV-----------------------------------------ARAG
        E+GSSGWKST RR+VS A PAALEN EDR+  T  RTHN IR PR +TSG+WNNV                                          RAG
Subjt:  EIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRGTTSGQWNNV-----------------------------------------ARAG

Query:  RRVSTGGRTKNGSVEGLPQASNNQLRTGMDKGNLT
        RRV  GGRT NGS   LP+ASN+QLRTG DKG+LT
Subjt:  RRVSTGGRTKNGSVEGLPQASNNQLRTGMDKGNLT

A0A4S8I6A0 Uncharacterized protein6.5e-2158.18Show/hide
Query:  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRGTTSGQWNN------------VARAGRRVSTGGRTKNGSVEGLPQASNNQL
        T+ PE+GSSG KS  RR  S APPAALEN EDRVPP   RTHN IRSPR    G                 ARAGRRV  GGRT NG + GLP+ASN++L
Subjt:  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRGTTSGQWNN------------VARAGRRVSTGGRTKNGSVEGLPQASNNQL

Query:  RTGMDKGNLT
        RTG DKGN T
Subjt:  RTGMDKGNLT

A0A6A5KZG0 Uncharacterized protein2.3e-1852Show/hide
Query:  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPR----GTTSG-------------------QWNN----VARAGRRVSTGGRTK
        T+ PE+GSSGWKST RR+VS APPAALEN EDRVPPT  RTHN IRSP       TSG                   +W       ARAGRRV  G    
Subjt:  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPR----GTTSG-------------------QWNN----VARAGRRVSTGGRTK

Query:  NGSVEGLPQASNNQLRTGMDKGNLT
         G    LP+ASN++LRTG DKGN T
Subjt:  NGSVEGLPQASNNQLRTGMDKGNLT

A0A6A5L408 Uncharacterized protein8.7e-1848.44Show/hide
Query:  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRGTTSGQW-NNVAR-----------------------------AGRRVSTGG
        T+  E+GSSGWKST RR+VS APPAALEN EDRVPPT  RTHN IRSPR   S +W  N+ +                             +G RV  GG
Subjt:  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRGTTSGQW-NNVAR-----------------------------AGRRVSTGG

Query:  RTKNGSVEGLPQASNNQLRTGMDKGNLT
        R   G    LP+ASN++LRTG DKGN T
Subjt:  RTKNGSVEGLPQASNNQLRTGMDKGNLT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAGTCAAGAAATACTTCGACTTCCATTTGGCCTGAGCTTGTGGATACTCACGACAGAGTCGACGATCCGACCTCATTGCCGGAGATAGGGTCCAGTGGC
TGGAAGAGCACTACACGTCGCATGGTGTCTGATGCTCCCCCGGCGGCCCTTGAAAATCTGGAGGACCGAGTGCCTCCCACGTCCAGTCGTACTCATAACCACATC
AGGTCTCCAAGGGGAACAACCTCTGGTCAATGGAACAATGTAGCGAGAGCGGGTCGCCGCGTGTCAACCGGGGGACGGACTAAGAACGGCTCCGTCGAAGGCCTT
CCCCAGGCATCAAACAATCAACTCAGAACTGGTATGGACAAGGGGAATCTGACTCGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAGTCAAGAAATACTTCGACTTCCATTTGGCCTGAGCTTGTGGATACTCACGACAGAGTCGACGATCCGACCTCATTGCCGGAGATAGGGTCCAGTGGC
TGGAAGAGCACTACACGTCGCATGGTGTCTGATGCTCCCCCGGCGGCCCTTGAAAATCTGGAGGACCGAGTGCCTCCCACGTCCAGTCGTACTCATAACCACATC
AGGTCTCCAAGGGGAACAACCTCTGGTCAATGGAACAATGTAGCGAGAGCGGGTCGCCGCGTGTCAACCGGGGGACGGACTAAGAACGGCTCCGTCGAAGGCCTT
CCCCAGGCATCAAACAATCAACTCAGAACTGGTATGGACAAGGGGAATCTGACTCGTTAA
Protein sequenceShow/hide protein sequence
MAESRNTSTSIWPELVDTHDRVDDPTSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRGTTSGQWNNVARAGRRVSTGGRTKNGSVEGL
PQASNNQLRTGMDKGNLTR