CuGenDBv2

Gene ID	Lsi10G006530
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Transmembrane protein
Genome location	chr10:9088425..9092464
RNA-Seq Expression	Lsi10G006530
Synteny	Lsi10G006530
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004148441.1 uncharacterized protein LOC101209555 [Cucumis sativus]

9.1e-68

82.76

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Query:  MFNFEDELIIEPGVSWLIWIQLLVILLIFALCSLTIFAIDFSKTNTTDINSTAAIASSSN-TRFLSHTAHHNGKILPNHDIGIDPNLPRNAQVTDDQSIR
        MFNFEDELII+PG+SWLIWIQLLVILLIF LC LTIFA DFSK+NTTD NSTAAIASSS+ TRFLSH+ H    ILPN +I I PN PRNAQVT+DQS R
Subjt:  MFNFEDELIIEPGVSWLIWIQLLVILLIFALCSLTIFAIDFSKTNTTDINSTAAIASSSN-TRFLSHTAHHNGKILPNHDIGIDPNLPRNAQVTDDQSIR

Query:  GEITSSTSRRITPVGEGSVVGGEGSQETKLDLHPCSYFRLAKLAFLRCLGLDSSTENSVSDERQRQESRKSKES
        GEITSSTSRRIT VGEG+V+GGE SQETKLDLHPCSYFRLAK AFLRCLGLDSST+NS+SDERQR ESRKSKES
Subjt:  GEITSSTSRRITPVGEGSVVGGEGSQETKLDLHPCSYFRLAKLAFLRCLGLDSSTENSVSDERQRQESRKSKES

XP_008457891.2 PREDICTED: uncharacterized protein LOC103497467 [Cucumis melo]

2.0e-67

81.61

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Query:  MFNFEDELIIEPGVSWLIWIQLLVILLIFALCSLTIFAIDFSKTNTTDINSTAAIASSSN-TRFLSHTAHHNGKILPNHDIGIDPNLPRNAQVTDDQSIR
        MFNFEDELII+PG+SWLIWIQLLVILL+F LC LTIFAIDFSK++T D NSTAAIASSS+ TRFLSH+AH+   ILPN +I I PN PRNAQV +DQS R
Subjt:  MFNFEDELIIEPGVSWLIWIQLLVILLIFALCSLTIFAIDFSKTNTTDINSTAAIASSSN-TRFLSHTAHHNGKILPNHDIGIDPNLPRNAQVTDDQSIR

Query:  GEITSSTSRRITPVGEGSVVGGEGSQETKLDLHPCSYFRLAKLAFLRCLGLDSSTENSVSDERQRQESRKSKES
        GEITSST+RRIT VGEG+V+GGEGSQETKLDLHPCSYFRLAK AFLRCLGLDSS ENS+SDERQR ESRKSKES
Subjt:  GEITSSTSRRITPVGEGSVVGGEGSQETKLDLHPCSYFRLAKLAFLRCLGLDSSTENSVSDERQRQESRKSKES

XP_022928064.1 uncharacterized protein LOC111434961 [Cucurbita moschata]

8.6e-58

75.44

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Query:  MFNFEDELIIEPGVSWLIWIQLLVILLIFALCSLTIFAIDFSKTNTTDINSTAAIASSSNTRFLSHTAHHNGKILPNHDIGIDPNLPRNAQVTDDQSIRG
        MFNFEDELI+EPGVSWLIWIQLLVI+LIFAL  LT+FA+DFSK ++T+INS+AA+ASSS +RF+   A   GK LPN +  ID N PR  QV+ DQSIRG
Subjt:  MFNFEDELIIEPGVSWLIWIQLLVILLIFALCSLTIFAIDFSKTNTTDINSTAAIASSSNTRFLSHTAHHNGKILPNHDIGIDPNLPRNAQVTDDQSIRG

Query:  EITSSTSRRITPVGEGSVVGGEGSQETKLDLHPCSYFRLAKLAFLRCLGLDSSTENSVSDERQRQESRKSK
        EITSSTSRR+T V EG+VVGG+GSQETK+DLHPCSYFRLAK AFLRCLGLDSSTE SVSDE QRQESRKS+
Subjt:  EITSSTSRRITPVGEGSVVGGEGSQETKLDLHPCSYFRLAKLAFLRCLGLDSSTENSVSDERQRQESRKSK

XP_022971697.1 uncharacterized protein LOC111470367 [Cucurbita maxima]

2.5e-57

76.02

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Query:  MFNFEDELIIEPGVSWLIWIQLLVILLIFALCSLTIFAIDFSKTNTTDINSTAAIASSSNTRFLSHTAHHNGKILPNHDIGIDPNLPRNAQVTDDQSIRG
        MFNFEDELI+EPGVSWLIWIQLLVI+LIFAL  LT+FA+DFSK ++T+ NS+AAIASSS TRF+   A   GK LPN +  ID N PR AQV+ DQSIRG
Subjt:  MFNFEDELIIEPGVSWLIWIQLLVILLIFALCSLTIFAIDFSKTNTTDINSTAAIASSSNTRFLSHTAHHNGKILPNHDIGIDPNLPRNAQVTDDQSIRG

Query:  EITSSTSRRITPVGEGSVVGGEGSQETKLDLHPCSYFRLAKLAFLRCLGLDSSTENSVSDERQRQESRKSK
        EITSSTSRR+T V EG+VVGG+GSQETK+DLHPCSYFRLAK AFLRCLGLDSSTE SVSDE Q QESRKS+
Subjt:  EITSSTSRRITPVGEGSVVGGEGSQETKLDLHPCSYFRLAKLAFLRCLGLDSSTENSVSDERQRQESRKSK

XP_038900493.1 uncharacterized protein LOC120087700 [Benincasa hispida]

4.7e-72

89.08

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Query:  MFNFEDELIIEPGVSWLIWIQLLVILLIFALCSLTIFAIDFSKTNTTDINSTAAIASSSNTRFLSHTAHHNGK-ILPNHDIGIDPNLPRNAQVTDDQSIR
        MFNFEDELIIEPG SWLIWIQLLVILLIF LC LTIFAIDFSKTNTTDINSTAAIASSS TRFLS    HNGK I PNH+IGIDPN PRNAQVT++QSIR
Subjt:  MFNFEDELIIEPGVSWLIWIQLLVILLIFALCSLTIFAIDFSKTNTTDINSTAAIASSSNTRFLSHTAHHNGK-ILPNHDIGIDPNLPRNAQVTDDQSIR

Query:  GEITSSTSRRITPVGEGSVVGGEGSQETKLDLHPCSYFRLAKLAFLRCLGLDSSTENSVSDERQRQESRKSKES
        GEITSSTSRRIT VGEG+VVGGEGSQETKLDLHPCSYFRLAK AFLRCLGLD+STENSVSDERQRQESRK KES
Subjt:  GEITSSTSRRITPVGEGSVVGGEGSQETKLDLHPCSYFRLAKLAFLRCLGLDSSTENSVSDERQRQESRKSKES

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LM30 Uncharacterized protein

4.4e-68

82.76

Show/hide

Query:  MFNFEDELIIEPGVSWLIWIQLLVILLIFALCSLTIFAIDFSKTNTTDINSTAAIASSSN-TRFLSHTAHHNGKILPNHDIGIDPNLPRNAQVTDDQSIR
        MFNFEDELII+PG+SWLIWIQLLVILLIF LC LTIFA DFSK+NTTD NSTAAIASSS+ TRFLSH+ H    ILPN +I I PN PRNAQVT+DQS R
Subjt:  MFNFEDELIIEPGVSWLIWIQLLVILLIFALCSLTIFAIDFSKTNTTDINSTAAIASSSN-TRFLSHTAHHNGKILPNHDIGIDPNLPRNAQVTDDQSIR

Query:  GEITSSTSRRITPVGEGSVVGGEGSQETKLDLHPCSYFRLAKLAFLRCLGLDSSTENSVSDERQRQESRKSKES
        GEITSSTSRRIT VGEG+V+GGE SQETKLDLHPCSYFRLAK AFLRCLGLDSST+NS+SDERQR ESRKSKES
Subjt:  GEITSSTSRRITPVGEGSVVGGEGSQETKLDLHPCSYFRLAKLAFLRCLGLDSSTENSVSDERQRQESRKSKES

A0A1S3C6P8 uncharacterized protein LOC103497467

9.8e-68

81.61

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Query:  MFNFEDELIIEPGVSWLIWIQLLVILLIFALCSLTIFAIDFSKTNTTDINSTAAIASSSN-TRFLSHTAHHNGKILPNHDIGIDPNLPRNAQVTDDQSIR
        MFNFEDELII+PG+SWLIWIQLLVILL+F LC LTIFAIDFSK++T D NSTAAIASSS+ TRFLSH+AH+   ILPN +I I PN PRNAQV +DQS R
Subjt:  MFNFEDELIIEPGVSWLIWIQLLVILLIFALCSLTIFAIDFSKTNTTDINSTAAIASSSN-TRFLSHTAHHNGKILPNHDIGIDPNLPRNAQVTDDQSIR

Query:  GEITSSTSRRITPVGEGSVVGGEGSQETKLDLHPCSYFRLAKLAFLRCLGLDSSTENSVSDERQRQESRKSKES
        GEITSST+RRIT VGEG+V+GGEGSQETKLDLHPCSYFRLAK AFLRCLGLDSS ENS+SDERQR ESRKSKES
Subjt:  GEITSSTSRRITPVGEGSVVGGEGSQETKLDLHPCSYFRLAKLAFLRCLGLDSSTENSVSDERQRQESRKSKES

A0A5A7TVH8 Uncharacterized protein

9.8e-68

81.61

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Query:  MFNFEDELIIEPGVSWLIWIQLLVILLIFALCSLTIFAIDFSKTNTTDINSTAAIASSSN-TRFLSHTAHHNGKILPNHDIGIDPNLPRNAQVTDDQSIR
        MFNFEDELII+PG+SWLIWIQLLVILL+F LC LTIFAIDFSK++T D NSTAAIASSS+ TRFLSH+AH+   ILPN +I I PN PRNAQV +DQS R
Subjt:  MFNFEDELIIEPGVSWLIWIQLLVILLIFALCSLTIFAIDFSKTNTTDINSTAAIASSSN-TRFLSHTAHHNGKILPNHDIGIDPNLPRNAQVTDDQSIR

Query:  GEITSSTSRRITPVGEGSVVGGEGSQETKLDLHPCSYFRLAKLAFLRCLGLDSSTENSVSDERQRQESRKSKES
        GEITSST+RRIT VGEG+V+GGEGSQETKLDLHPCSYFRLAK AFLRCLGLDSS ENS+SDERQR ESRKSKES
Subjt:  GEITSSTSRRITPVGEGSVVGGEGSQETKLDLHPCSYFRLAKLAFLRCLGLDSSTENSVSDERQRQESRKSKES

A0A6J1EJS6 uncharacterized protein LOC111434961

4.1e-58

75.44

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Query:  MFNFEDELIIEPGVSWLIWIQLLVILLIFALCSLTIFAIDFSKTNTTDINSTAAIASSSNTRFLSHTAHHNGKILPNHDIGIDPNLPRNAQVTDDQSIRG
        MFNFEDELI+EPGVSWLIWIQLLVI+LIFAL  LT+FA+DFSK ++T+INS+AA+ASSS +RF+   A   GK LPN +  ID N PR  QV+ DQSIRG
Subjt:  MFNFEDELIIEPGVSWLIWIQLLVILLIFALCSLTIFAIDFSKTNTTDINSTAAIASSSNTRFLSHTAHHNGKILPNHDIGIDPNLPRNAQVTDDQSIRG

Query:  EITSSTSRRITPVGEGSVVGGEGSQETKLDLHPCSYFRLAKLAFLRCLGLDSSTENSVSDERQRQESRKSK
        EITSSTSRR+T V EG+VVGG+GSQETK+DLHPCSYFRLAK AFLRCLGLDSSTE SVSDE QRQESRKS+
Subjt:  EITSSTSRRITPVGEGSVVGGEGSQETKLDLHPCSYFRLAKLAFLRCLGLDSSTENSVSDERQRQESRKSK

A0A6J1I2P0 uncharacterized protein LOC111470367

1.2e-57

76.02

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Query:  MFNFEDELIIEPGVSWLIWIQLLVILLIFALCSLTIFAIDFSKTNTTDINSTAAIASSSNTRFLSHTAHHNGKILPNHDIGIDPNLPRNAQVTDDQSIRG
        MFNFEDELI+EPGVSWLIWIQLLVI+LIFAL  LT+FA+DFSK ++T+ NS+AAIASSS TRF+   A   GK LPN +  ID N PR AQV+ DQSIRG
Subjt:  MFNFEDELIIEPGVSWLIWIQLLVILLIFALCSLTIFAIDFSKTNTTDINSTAAIASSSNTRFLSHTAHHNGKILPNHDIGIDPNLPRNAQVTDDQSIRG

Query:  EITSSTSRRITPVGEGSVVGGEGSQETKLDLHPCSYFRLAKLAFLRCLGLDSSTENSVSDERQRQESRKSK
        EITSSTSRR+T V EG+VVGG+GSQETK+DLHPCSYFRLAK AFLRCLGLDSSTE SVSDE Q QESRKS+
Subjt:  EITSSTSRRITPVGEGSVVGGEGSQETKLDLHPCSYFRLAKLAFLRCLGLDSSTENSVSDERQRQESRKSK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G64880.1 unknown protein

4.6e-17

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Query:  VSWLIWIQLLV-ILLIFALCSLTIFAIDFSKTNTTDINSTAAIASSS-NTRFLSHTAHHNGKILPNHDIG--IDPNLPRNAQVTDDQSIRGEITSSTSRR
        + WLIWIQ+LV +LL+  LC + IF+ D    + +  +S  + + SS + RFLS     N   + +H +G  ++ +L ++ QV   QSI+GEIT + +RR
Subjt:  VSWLIWIQLLV-ILLIFALCSLTIFAIDFSKTNTTDINSTAAIASSS-NTRFLSHTAHHNGKILPNHDIG--IDPNLPRNAQVTDDQSIRGEITSSTSRR

Query:  ITPVGEGSVVGGEGSQETKLD---LHPCSYFRLAKLAFLRCLGLDSSTENSVSDERQRQESRKSK
        +T V E     GEGS E        HPC+ FRLA  AFL+C G+D STE   +++  RQES+K +
Subjt:  ITPVGEGSVVGGEGSQETKLD---LHPCSYFRLAKLAFLRCLGLDSSTENSVSDERQRQESRKSK

Sequences

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CDS sequence

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ATGTTCAATTTTGAAGATGAGCTCATAATCGAACCAGGAGTTTCATGGTTAATCTGGATTCAGCTTCTTGTTATTCTCCTCATTTTCGCCCTTTGTTCTCTTACCATCTT
CGCTATTGATTTCTCCAAAACCAATACTACTGACATCAATTCCACTGCCGCCATTGCTTCCTCTTCCAATACTCGCTTCCTTTCTCATACTGCTCATCACAACGGGAAGA
TTCTTCCTAACCACGACATCGGAATTGACCCTAATTTGCCGCGGAATGCGCAGGTCACTGACGACCAAAGCATCAGGGGGGAGATAACAAGTAGTACGAGCAGGAGAATC
ACACCAGTGGGAGAAGGCAGTGTAGTAGGAGGGGAAGGCTCTCAAGAAACCAAGTTAGATCTTCACCCTTGCAGTTATTTCAGGCTTGCTAAATTAGCATTTCTCAGGTG
CCTGGGGTTGGACTCTTCAACTGAGAACTCAGTCTCAGATGAAAGACAAAGACAGGAGTCAAGAAAATCCAAAGAAAGTTGA

mRNA sequence

Show/hide mRNA sequence

TCATTTTCTCGTTTATCTTCACCAAACTAATGAAAAAAAGAAAAAGGAAAAAGGAAAAATGGTGTAATCGTGAAGGGGTGAATGCGATGGGTCCAGTTTCTGCACGCCTT
CAAGGGCTGTAACAGGGAAGCTGTTGAGCTTCAAAGTCCTTTGCTTTTCTCTTGCTTCACTCATACCTTCCTTCCACTTTCTTCTTCTCCTCAAATTCAAATCCATAATC
ACCAACCAATTTTATTCCCAATTTCAATCTCTCTATGAAATTCTACTTTCCCCCAATATGTTCAATTTTGAAGATGAGCTCATAATCGAACCAGGAGTTTCATGGTTAAT
CTGGATTCAGCTTCTTGTTATTCTCCTCATTTTCGCCCTTTGTTCTCTTACCATCTTCGCTATTGATTTCTCCAAAACCAATACTACTGACATCAATTCCACTGCCGCCA
TTGCTTCCTCTTCCAATACTCGCTTCCTTTCTCATACTGCTCATCACAACGGGAAGATTCTTCCTAACCACGACATCGGAATTGACCCTAATTTGCCGCGGAATGCGCAG
GTCACTGACGACCAAAGCATCAGGGGGGAGATAACAAGTAGTACGAGCAGGAGAATCACACCAGTGGGAGAAGGCAGTGTAGTAGGAGGGGAAGGCTCTCAAGAAACCAA
GTTAGATCTTCACCCTTGCAGTTATTTCAGGCTTGCTAAATTAGCATTTCTCAGGTGCCTGGGGTTGGACTCTTCAACTGAGAACTCAGTCTCAGATGAAAGACAAAGAC
AGGAGTCAAGAAAATCCAAAGAAAGTTGATGTATGTCTCACTTTCCCCATTAAATGAACCTGTATGCATTATATCTGTAAGGTAGTTGCGTCTTTACACTGTAATATATC
TTTAAAAGCATTATGATTCTCATATCGCATGAGAGAACAAAATTGATTAATTCATCCAAATACATAGTCAAAACAAATGAAATCTTCATTCCAAAATTTATTTCTTAAAT
TTAAACAGGGAAGAAGATACTCAGAGAGGAAAATATGTTGTTAAAACGTAGGAAAACATAGCGGTACAGGAAGAAATTTTGGCATTGCAGAGAGTAG

Protein sequence

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MFNFEDELIIEPGVSWLIWIQLLVILLIFALCSLTIFAIDFSKTNTTDINSTAAIASSSNTRFLSHTAHHNGKILPNHDIGIDPNLPRNAQVTDDQSIRGEITSSTSRRI
TPVGEGSVVGGEGSQETKLDLHPCSYFRLAKLAFLRCLGLDSSTENSVSDERQRQESRKSKES

Lsi10G006530 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome