; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G006640 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G006640
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionShikimate kinase
Genome locationchr10:9237032..9239256
RNA-Seq ExpressionLsi10G006640
SyntenyLsi10G006640
Gene Ontology termsGO:0008652 - cellular amino acid biosynthetic process (biological process)
GO:0009423 - chorismate biosynthetic process (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0004765 - shikimate kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR027417 - P-loop containing nucleoside triphosphate hydrolase
IPR031322 - Shikimate kinase/gluconokinase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAT02351.1 shikimate kinase, partial [Cucumis sativus]2.0e-5284.67Show/hide
Query:  TEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD--------------VETLVRLSTLLEERGEAYANAEVKVSCEKIA
        TEALRKLSLMRQFVISTGGGAVTR+INWKYMHKGISVWLDVPLEALVKRISAV                 +TLVRLSTLLEERGEAYANAEVKVSCEKIA
Subjt:  TEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD--------------VETLVRLSTLLEERGEAYANAEVKVSCEKIA

Query:  AKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF
        AKLGTKDVSNVTPMAIAIEALE+IE FLKREDGYCAF
Subjt:  AKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF

NP_001292691.1 shikimate kinase, chloroplastic [Cucumis sativus]5.7e-5275.95Show/hide
Query:  MDLDRAALFLFNNEDI---STTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD--------------VETLVRLSTL
        M +  A +F    ED      TEAL KLSLMRQFVISTGGGAVTR+INWKYMHKGISVWLDVPLEALVKRISAV                 +TLVRLSTL
Subjt:  MDLDRAALFLFNNEDI---STTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD--------------VETLVRLSTL

Query:  LEERGEAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF
        LEERGEAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALE+IE FLKREDGYCAF
Subjt:  LEERGEAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF

XP_008457898.1 PREDICTED: shikimate kinase, chloroplastic-like [Cucumis melo]8.8e-5379.08Show/hide
Query:  AALFLFNNEDI---STTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD--------------VETLVRLSTLLEERG
        A +F    ED      TEALRKLSLMRQFVISTGGGAVTR+INWKYMHKGISVWLDVPLEALVKRISAV                 +TLVRLSTLLEERG
Subjt:  AALFLFNNEDI---STTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD--------------VETLVRLSTLLEERG

Query:  EAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF
        EAYANAEV VSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF
Subjt:  EAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF

XP_011649381.1 shikimate kinase, chloroplastic isoform X1 [Cucumis sativus]8.8e-5376.58Show/hide
Query:  MDLDRAALFLFNNEDI---STTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD--------------VETLVRLSTL
        M +  A +F    ED      TEALRKLSLMRQFVISTGGGAVTR+INWKYMHKGISVWLDVPLEALVKRISAV                 +TLVRLSTL
Subjt:  MDLDRAALFLFNNEDI---STTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD--------------VETLVRLSTL

Query:  LEERGEAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF
        LEERGEAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALE+IE FLKREDGYCAF
Subjt:  LEERGEAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF

XP_038902715.1 shikimate kinase, chloroplastic-like [Benincasa hispida]5.7e-5277.78Show/hide
Query:  AALFLFNNEDI---STTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD--------------VETLVRLSTLLEERG
        A +F    ED      TEALRKLSLM QFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRIS V                 +TLVRLSTLLEERG
Subjt:  AALFLFNNEDI---STTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD--------------VETLVRLSTLLEERG

Query:  EAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF
        EAYANA+V VSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF
Subjt:  EAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF

TrEMBL top hitse value%identityAlignment
A0A0A0LJX8 Shikimate kinase4.3e-5376.58Show/hide
Query:  MDLDRAALFLFNNEDI---STTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD--------------VETLVRLSTL
        M +  A +F    ED      TEALRKLSLMRQFVISTGGGAVTR+INWKYMHKGISVWLDVPLEALVKRISAV                 +TLVRLSTL
Subjt:  MDLDRAALFLFNNEDI---STTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD--------------VETLVRLSTL

Query:  LEERGEAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF
        LEERGEAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALE+IE FLKREDGYCAF
Subjt:  LEERGEAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF

A0A1S3C781 Shikimate kinase4.3e-5379.08Show/hide
Query:  AALFLFNNEDI---STTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD--------------VETLVRLSTLLEERG
        A +F    ED      TEALRKLSLMRQFVISTGGGAVTR+INWKYMHKGISVWLDVPLEALVKRISAV                 +TLVRLSTLLEERG
Subjt:  AALFLFNNEDI---STTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD--------------VETLVRLSTLLEERG

Query:  EAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF
        EAYANAEV VSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF
Subjt:  EAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF

A0A5A7TS61 Shikimate kinase4.3e-5379.08Show/hide
Query:  AALFLFNNEDI---STTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD--------------VETLVRLSTLLEERG
        A +F    ED      TEALRKLSLMRQFVISTGGGAVTR+INWKYMHKGISVWLDVPLEALVKRISAV                 +TLVRLSTLLEERG
Subjt:  AALFLFNNEDI---STTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD--------------VETLVRLSTLLEERG

Query:  EAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF
        EAYANAEV VSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF
Subjt:  EAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF

E7BBT4 Shikimate kinase2.8e-5275.95Show/hide
Query:  MDLDRAALFLFNNEDI---STTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD--------------VETLVRLSTL
        M +  A +F    ED      TEAL KLSLMRQFVISTGGGAVTR+INWKYMHKGISVWLDVPLEALVKRISAV                 +TLVRLSTL
Subjt:  MDLDRAALFLFNNEDI---STTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD--------------VETLVRLSTL

Query:  LEERGEAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF
        LEERGEAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALE+IE FLKREDGYCAF
Subjt:  LEERGEAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF

Q6PLR3 Shikimate kinase (Fragment)9.5e-5384.67Show/hide
Query:  TEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD--------------VETLVRLSTLLEERGEAYANAEVKVSCEKIA
        TEALRKLSLMRQFVISTGGGAVTR+INWKYMHKGISVWLDVPLEALVKRISAV                 +TLVRLSTLLEERGEAYANAEVKVSCEKIA
Subjt:  TEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD--------------VETLVRLSTLLEERGEAYANAEVKVSCEKIA

Query:  AKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF
        AKLGTKDVSNVTPMAIAIEALE+IE FLKREDGYCAF
Subjt:  AKLGTKDVSNVTPMAIAIEALEQIEIFLKREDGYCAF

SwissProt top hitse value%identityAlignment
Q00497 Shikimate kinase, chloroplastic7.1e-2954.48Show/hide
Query:  RAALFLFNNEDISTTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISA------------VSDV--ETLVRLSTLLEERGEA
        R   F  +NE    TE L KLSLM + V+STGGGAV R INW++MHKGISVWLDVPLEAL KRI+               DV   TL RL+TL+E RGE 
Subjt:  RAALFLFNNEDISTTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISA------------VSDV--ETLVRLSTLLEERGEA

Query:  YANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKRE
        YANA  +VS E IA K   KDV ++TP  I +E L QIE FLK +
Subjt:  YANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKRE

Q5NTH3 Shikimate kinase 2, chloroplastic3.0e-2751.05Show/hide
Query:  DRAALFLFNNEDISTTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAV------------SDVETLV--RLSTLLEERGE
        + +  F  +NE    +  LR LS MR+ V++TGGGAV R +NWKYM KG+SVWLDVPL+AL +RI+ V            SD  T    +LS L E+RG+
Subjt:  DRAALFLFNNEDISTTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAV------------SDVETLV--RLSTLLEERGE

Query:  AYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFL
        AYANA+ +VS E+IAAK G  DVS +TP  IAIEAL +IE F+
Subjt:  AYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFL

Q5NTH4 Shikimate kinase 1, chloroplastic1.9e-2651.56Show/hide
Query:  TEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAV------------SDVETLV--RLSTLLEERGEAYANAEVKVSCEKIA
        +  LR LS M++ V++TGGGAV R +NWKYM KG+SVWLDVPL+AL +RI+ V             D  T+   +LS L E+RG+AYANA+V+VS E+IA
Subjt:  TEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAV------------SDVETLV--RLSTLLEERGEAYANAEVKVSCEKIA

Query:  AKLGTKDVSNVTPMAIAIEALEQIEIFL
        +K G  DVS +TP  IAIE+  +IE F+
Subjt:  AKLGTKDVSNVTPMAIAIEALEQIEIFL

Q8GY88 Shikimate kinase 2, chloroplastic8.9e-3256.3Show/hide
Query:  TEALRKLSLM-RQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD---------------VETLVRLSTLLEERGEAYANAEVKVSCEK
        TEAL+KLSLM  Q V+STGGGAV R INWKYMHKGIS+WLDVPLEAL  RI+AV                    L RLST+ + RGEAY  A  +VS E 
Subjt:  TEALRKLSLM-RQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD---------------VETLVRLSTLLEERGEAYANAEVKVSCEK

Query:  IAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDG
        I  KLG + VS++TP  IAIEA EQ++ +L++EDG
Subjt:  IAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDG

Q9SJ05 Shikimate kinase 1, chloroplastic1.2e-3153.38Show/hide
Query:  AALFLFNNEDI---STTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAV-SDVETLV-------------RLSTLLEERG
        A +F+ + E+      T+AL+KLS   Q V+STGGGAV R INWKYMHKGIS+WLDVPLEAL  RI+AV +D   L+             RLS + +ERG
Subjt:  AALFLFNNEDI---STTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAV-SDVETLV-------------RLSTLLEERG

Query:  EAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKRED
        EAY NA  +VS E IAAK G K+VS++TP  IAIEA EQ+  FL++E+
Subjt:  EAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKRED

Arabidopsis top hitse value%identityAlignment
AT2G21940.1 shikimate kinase 18.3e-3353.38Show/hide
Query:  AALFLFNNEDI---STTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAV-SDVETLV-------------RLSTLLEERG
        A +F+ + E+      T+AL+KLS   Q V+STGGGAV R INWKYMHKGIS+WLDVPLEAL  RI+AV +D   L+             RLS + +ERG
Subjt:  AALFLFNNEDI---STTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAV-SDVETLV-------------RLSTLLEERG

Query:  EAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKRED
        EAY NA  +VS E IAAK G K+VS++TP  IAIEA EQ+  FL++E+
Subjt:  EAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKRED

AT2G21940.2 shikimate kinase 18.3e-3353.38Show/hide
Query:  AALFLFNNEDI---STTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAV-SDVETLV-------------RLSTLLEERG
        A +F+ + E+      T+AL+KLS   Q V+STGGGAV R INWKYMHKGIS+WLDVPLEAL  RI+AV +D   L+             RLS + +ERG
Subjt:  AALFLFNNEDI---STTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAV-SDVETLV-------------RLSTLLEERG

Query:  EAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKRED
        EAY NA  +VS E IAAK G K+VS++TP  IAIEA EQ+  FL++E+
Subjt:  EAYANAEVKVSCEKIAAKLGTKDVSNVTPMAIAIEALEQIEIFLKRED

AT4G39540.1 shikimate kinase 26.3e-3356.3Show/hide
Query:  TEALRKLSLM-RQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD---------------VETLVRLSTLLEERGEAYANAEVKVSCEK
        TEAL+KLSLM  Q V+STGGGAV R INWKYMHKGIS+WLDVPLEAL  RI+AV                    L RLST+ + RGEAY  A  +VS E 
Subjt:  TEALRKLSLM-RQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD---------------VETLVRLSTLLEERGEAYANAEVKVSCEK

Query:  IAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDG
        I  KLG + VS++TP  IAIEA EQ++ +L++EDG
Subjt:  IAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDG

AT4G39540.2 shikimate kinase 26.3e-3356.3Show/hide
Query:  TEALRKLSLM-RQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD---------------VETLVRLSTLLEERGEAYANAEVKVSCEK
        TEAL+KLSLM  Q V+STGGGAV R INWKYMHKGIS+WLDVPLEAL  RI+AV                    L RLST+ + RGEAY  A  +VS E 
Subjt:  TEALRKLSLM-RQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD---------------VETLVRLSTLLEERGEAYANAEVKVSCEK

Query:  IAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDG
        I  KLG + VS++TP  IAIEA EQ++ +L++EDG
Subjt:  IAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDG

AT4G39540.3 shikimate kinase 26.3e-3356.3Show/hide
Query:  TEALRKLSLM-RQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD---------------VETLVRLSTLLEERGEAYANAEVKVSCEK
        TEAL+KLSLM  Q V+STGGGAV R INWKYMHKGIS+WLDVPLEAL  RI+AV                    L RLST+ + RGEAY  A  +VS E 
Subjt:  TEALRKLSLM-RQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSD---------------VETLVRLSTLLEERGEAYANAEVKVSCEK

Query:  IAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDG
        I  KLG + VS++TP  IAIEA EQ++ +L++EDG
Subjt:  IAAKLGTKDVSNVTPMAIAIEALEQIEIFLKREDG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCTTGATCGGGCTGCTCTTTTTCTCTTCAATAATGAGGATATTTCAACTACGGAGGCATTGAGGAAGTTATCTTTGATGCGTCAGTTTGTTATTTCCACTGGTGG
AGGTGCCGTTACGAGAACGATAAACTGGAAATATATGCATAAAGGGATCAGTGTCTGGTTGGATGTGCCTTTGGAAGCCTTGGTTAAGAGAATTTCAGCTGTTTCTGATG
TTGAAACCCTCGTCCGTTTATCTACTCTCCTGGAAGAGAGGGGTGAAGCATATGCCAACGCTGAAGTCAAAGTTTCCTGCGAAAAAATTGCAGCCAAACTGGGTACTAAA
GACGTATCTAATGTCACACCTATGGCCATAGCAATCGAGGCACTCGAACAAATCGAGATCTTTTTGAAGAGAGAAGATGGTTATTGTGCATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCTTGATCGGGCTGCTCTTTTTCTCTTCAATAATGAGGATATTTCAACTACGGAGGCATTGAGGAAGTTATCTTTGATGCGTCAGTTTGTTATTTCCACTGGTGG
AGGTGCCGTTACGAGAACGATAAACTGGAAATATATGCATAAAGGGATCAGTGTCTGGTTGGATGTGCCTTTGGAAGCCTTGGTTAAGAGAATTTCAGCTGTTTCTGATG
TTGAAACCCTCGTCCGTTTATCTACTCTCCTGGAAGAGAGGGGTGAAGCATATGCCAACGCTGAAGTCAAAGTTTCCTGCGAAAAAATTGCAGCCAAACTGGGTACTAAA
GACGTATCTAATGTCACACCTATGGCCATAGCAATCGAGGCACTCGAACAAATCGAGATCTTTTTGAAGAGAGAAGATGGTTATTGTGCATTTTGATGGCCACAGGAAAT
GACTCATTTAGGTACATATGAATAAAGGCAATGGGTGGAACAAATTTGATTTTTTCATTATTTCTGGATAATCTTCTCAATCAAGTATCAAGGCATGTTTCAGTTTCACT
CAAGGCTGTCCCATATTTATTGATCTCAGTAAGTGTGTTTGATGTAGTGTAGTGTATCTACAATGTATCATCTGAAAAATGTGGATGGTTATAAGTTTCCAAGCATATGG
AAAAACTAGCCATTAGTTGTATTTGAAAGAGTTGGTGAATTCATCTAAGTTAAGAACTTGATGATATCATTCAATTAAGGTTATATTATTGAAATACCCCTAAATTAGGT
TCTATTGCATTAGATTTGAAAA
Protein sequenceShow/hide protein sequence
MDLDRAALFLFNNEDISTTEALRKLSLMRQFVISTGGGAVTRTINWKYMHKGISVWLDVPLEALVKRISAVSDVETLVRLSTLLEERGEAYANAEVKVSCEKIAAKLGTK
DVSNVTPMAIAIEALEQIEIFLKREDGYCAF