; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G006650 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G006650
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionShikimate kinase
Genome locationchr10:9240712..9242406
RNA-Seq ExpressionLsi10G006650
SyntenyLsi10G006650
Gene Ontology termsGO:0008652 - cellular amino acid biosynthetic process (biological process)
GO:0009423 - chorismate biosynthetic process (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0004765 - shikimate kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571386.1 Shikimate kinase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.3e-2686.67Show/hide
Query:  SMETTVTQQLQFSPWIHSKSISAKPKGSLHFSRRLAEQHILQAPFSFDLQVSRHSSHRRTVALKISCSYKNSSEL
        SME TVTQQLQFSPWIHSKSI+AKPKGSLHFSRRL EQH+LQAPFSF+LQ+SR SSH RTVALKISCSY+NSS L
Subjt:  SMETTVTQQLQFSPWIHSKSISAKPKGSLHFSRRLAEQHILQAPFSFDLQVSRHSSHRRTVALKISCSYKNSSEL
NP_001292691.1 shikimate kinase, chloroplastic [Cucumis sativus]1.0e-2888.46Show/hide
Query:  MPASMETTVTQQLQFSPWIHSKSISAKPKGSLHFSRRLAEQHILQAPFSFDLQVSRHSSHRRTVALKISCSYKNSSEL
        MP SMETTVTQQLQFSPWIHSKSISAK KGSLHF RRLAEQ +LQAPFSFDL+VSRHS+HRRTVALKISCSY NSS L
Subjt:  MPASMETTVTQQLQFSPWIHSKSISAKPKGSLHFSRRLAEQHILQAPFSFDLQVSRHSSHRRTVALKISCSYKNSSEL
XP_008457898.1 PREDICTED: shikimate kinase, chloroplastic-like [Cucumis melo]1.1e-2790.54Show/hide
Query:  METTVTQQLQFSPWIHSKSISAKPKGSLHFSRRLAEQHILQAPFSFDLQVSRHSSHRRTVALKISCSYKNSSEL
        METTV QQLQFSPWIHSKS+SAKPKGSLHF RRLAEQ ILQAPFSFDL+VSRHS+HRRTVALKISCSYKNSS L
Subjt:  METTVTQQLQFSPWIHSKSISAKPKGSLHFSRRLAEQHILQAPFSFDLQVSRHSSHRRTVALKISCSYKNSSEL
XP_011649381.1 shikimate kinase, chloroplastic isoform X1 [Cucumis sativus]1.0e-2888.46Show/hide
Query:  MPASMETTVTQQLQFSPWIHSKSISAKPKGSLHFSRRLAEQHILQAPFSFDLQVSRHSSHRRTVALKISCSYKNSSEL
        MP SMETTVTQQLQFSPWIHSKSISAK KGSLHF RRLAEQ +LQAPFSFDL+VSRHS+HRRTVALKISCSY NSS L
Subjt:  MPASMETTVTQQLQFSPWIHSKSISAKPKGSLHFSRRLAEQHILQAPFSFDLQVSRHSSHRRTVALKISCSYKNSSEL
XP_038902715.1 shikimate kinase, chloroplastic-like [Benincasa hispida]9.7e-2788.46Show/hide
Query:  MPASMETTVTQQLQFSPWIHSKSISAKPKGSLHFSRRLAEQHILQAPFSFDLQVSRHSSHRRTVALKISCSYKNSSEL
        MPASMETTVTQQLQFSPWIHSKSI+AKPKG LHFSRRLAE    Q+PFSFDLQVSRHSS RRTVALKISCSYKNSS L
Subjt:  MPASMETTVTQQLQFSPWIHSKSISAKPKGSLHFSRRLAEQHILQAPFSFDLQVSRHSSHRRTVALKISCSYKNSSEL
TrEMBL top hitse value%identityAlignment
A0A0A0LJX8 Shikimate kinase5.0e-2988.46Show/hide
Query:  MPASMETTVTQQLQFSPWIHSKSISAKPKGSLHFSRRLAEQHILQAPFSFDLQVSRHSSHRRTVALKISCSYKNSSEL
        MP SMETTVTQQLQFSPWIHSKSISAK KGSLHF RRLAEQ +LQAPFSFDL+VSRHS+HRRTVALKISCSY NSS L
Subjt:  MPASMETTVTQQLQFSPWIHSKSISAKPKGSLHFSRRLAEQHILQAPFSFDLQVSRHSSHRRTVALKISCSYKNSSEL
A0A1S3C781 Shikimate kinase5.6e-2890.54Show/hide
Query:  METTVTQQLQFSPWIHSKSISAKPKGSLHFSRRLAEQHILQAPFSFDLQVSRHSSHRRTVALKISCSYKNSSEL
        METTV QQLQFSPWIHSKS+SAKPKGSLHF RRLAEQ ILQAPFSFDL+VSRHS+HRRTVALKISCSYKNSS L
Subjt:  METTVTQQLQFSPWIHSKSISAKPKGSLHFSRRLAEQHILQAPFSFDLQVSRHSSHRRTVALKISCSYKNSSEL
A0A5A7TS61 Shikimate kinase5.6e-2890.54Show/hide
Query:  METTVTQQLQFSPWIHSKSISAKPKGSLHFSRRLAEQHILQAPFSFDLQVSRHSSHRRTVALKISCSYKNSSEL
        METTV QQLQFSPWIHSKS+SAKPKGSLHF RRLAEQ ILQAPFSFDL+VSRHS+HRRTVALKISCSYKNSS L
Subjt:  METTVTQQLQFSPWIHSKSISAKPKGSLHFSRRLAEQHILQAPFSFDLQVSRHSSHRRTVALKISCSYKNSSEL
A0A6J1I3Z2 Shikimate kinase1.4e-2686.49Show/hide
Query:  METTVTQQLQFSPWIHSKSISAKPKGSLHFSRRLAEQHILQAPFSFDLQVSRHSSHRRTVALKISCSYKNSSEL
        ME T+TQQLQFSPWIHSKSI+AKPKGSLHFSRRL EQH+LQAPFSF+LQ+SR SSH RTVALKISCSYKNSS L
Subjt:  METTVTQQLQFSPWIHSKSISAKPKGSLHFSRRLAEQHILQAPFSFDLQVSRHSSHRRTVALKISCSYKNSSEL
E7BBT4 Shikimate kinase5.0e-2988.46Show/hide
Query:  MPASMETTVTQQLQFSPWIHSKSISAKPKGSLHFSRRLAEQHILQAPFSFDLQVSRHSSHRRTVALKISCSYKNSSEL
        MP SMETTVTQQLQFSPWIHSKSISAK KGSLHF RRLAEQ +LQAPFSFDL+VSRHS+HRRTVALKISCSY NSS L
Subjt:  MPASMETTVTQQLQFSPWIHSKSISAKPKGSLHFSRRLAEQHILQAPFSFDLQVSRHSSHRRTVALKISCSYKNSSEL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G21940.2 shikimate kinase 11.7e-0533.33Show/hide
Query:  METTVTQQLQFSPWIHSKSISAKP-KGSLHFSRRLAEQHILQAPFSFDLQVSRHSSHRRTVALKISCSYKNSSEL
        ME  +TQ++Q+  W+  + +  KP +GSL +S+++      +      LQ  R +  RR V+  +SCS  NSS L
Subjt:  METTVTQQLQFSPWIHSKSISAKP-KGSLHFSRRLAEQHILQAPFSFDLQVSRHSSHRRTVALKISCSYKNSSEL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGCAAGTATGGAGACCACGGTTACACAGCAGTTGCAGTTTTCACCATGGATCCACTCGAAGAGTATTTCTGCAAAACCGAAGGGTTCGCTGCATTTTTCTAGGAG
ATTAGCGGAGCAGCATATATTGCAGGCCCCATTTTCATTTGATTTACAGGTGTCGAGACATTCAAGTCATCGCAGAACAGTCGCTTTGAAAATCTCCTGTTCTTACAAGA
ACTCTTCAGAATTATGTTCATCTACCTTGAGTTTGACCCAATCTCCTTATTTCTACCTGCATATATATTATATTTGCAAAACTAATAATTTATATAAAAATAAAAAAAAG
AAAAAAGAAAAAAAAATGGAAAACAGTGTAATCAACTTTTATGAACATTAG
mRNA sequenceShow/hide mRNA sequence
CATGGACTCGCGGGGGTTGGTAAGAGCCAATTTTGAATACAAAAATAATTTTTTTTAAAAAAAAAAGGAAAAAGGAAAAAAAATCCCCACCGGCGAGGCATCTCAAAGCT
TCAAAGTCCAAATTTCTTCGCCAATCGCAGGGACGAAGTTTCTGGTGTTGGAGCTGAGAGAGACGGAGGCATTGCAAACCAGAGGAGTATCTTGAGAGGAATCAGAGCTC
CAAGATCTTCTCTGCGTTCAACCTCTTCATATAATCGCATTCCAACTCCGCGATTATATTTGTGTAAAAAAAATTTCTTATTTGTTCTGGAAATTTGGTGAAATCGAGCT
GCTATGCCAGCAAGTATGGAGACCACGGTTACACAGCAGTTGCAGTTTTCACCATGGATCCACTCGAAGAGTATTTCTGCAAAACCGAAGGGTTCGCTGCATTTTTCTAG
GAGATTAGCGGAGCAGCATATATTGCAGGCCCCATTTTCATTTGATTTACAGGTGTCGAGACATTCAAGTCATCGCAGAACAGTCGCTTTGAAAATCTCCTGTTCTTACA
AGAACTCTTCAGAATTATGTTCATCTACCTTGAGTTTGACCCAATCTCCTTATTTCTACCTGCATATATATTATATTTGCAAAACTAATAATTTATATAAAAATAAAAAA
AAGAAAAAAGAAAAAAAAATGGAAAACAGTGTAATCAACTTTTATGAACATTAG
Protein sequenceShow/hide protein sequence
MPASMETTVTQQLQFSPWIHSKSISAKPKGSLHFSRRLAEQHILQAPFSFDLQVSRHSSHRRTVALKISCSYKNSSELCSSTLSLTQSPYFYLHIYYICKTNNLYKNKKK
KKEKKMENSVINFYEH