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Lsi10G006930 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G006930
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPlant transposase (Ptta/En/Spm family)
Genome locationchr10:9697228..9699625
RNA-Seq ExpressionLsi10G006930
SyntenyLsi10G006930
Gene Ontology termsNA
InterPro domainsIPR004252 - Probable transposase, Ptta/En/Spm, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN73688.1 hypothetical protein VITISV_042244 [Vitis vinifera]8.6e-1131.25Show/hide
Query:  KKNIKNCVCHHYLESGMAINVIYE--EKELGKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQNVDTSRVMPSEK-------EVYEQVMGKEHS
        K N    V  H   S     + YE  +KE   +P R+E+F   HK KDG+ +D+   +++++FQ+ +SQ   TS    +         E+Y QVMG E  
Subjt:  KKNIKNCVCHHYLESGMAINVIYE--EKELGKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQNVDTSRVMPSEK-------EVYEQVMGKEHS

Query:  GRVRGMGLGPTPTEVFKTKYHQCVGAEITSETSMENHEAVEERSRLTKLESEMVDMRYLL
        G VRG G GPTPT VF +   +  GA ++++        +    + T    E+ +++Y L
Subjt:  GRVRGMGLGPTPTEVFKTKYHQCVGAEITSETSMENHEAVEERSRLTKLESEMVDMRYLL

RVW23753.1 hypothetical protein CK203_097576 [Vitis vinifera]5.0e-1129.38Show/hide
Query:  LTVNGDIDVIGIQNSLFKKNIKNCVCHHYLESGMAINVIYE--EKELGKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQNVDTSRVMPSEK--
        + + G     G  +   K N    V  H   S     + YE  +KE   +P R+E+F   HK KDG+ +D+   +++++FQ+ +SQ   TS    +    
Subjt:  LTVNGDIDVIGIQNSLFKKNIKNCVCHHYLESGMAINVIYE--EKELGKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQNVDTSRVMPSEK--

Query:  -----EVYEQVMGKEHSGRVRGMGLGPTPTEVFKTKYHQCVGAEITSETSMENHEAVEERSRLTKLESEMVDMRYLL
             E+Y QVMG E  G VRG G GPTPT VF +   +  GA ++++        +    + T    E+ +++Y L
Subjt:  -----EVYEQVMGKEHSGRVRGMGLGPTPTEVFKTKYHQCVGAEITSETSMENHEAVEERSRLTKLESEMVDMRYLL

XP_016200318.1 uncharacterized protein LOC107641338 [Arachis ipaensis]1.1e-1033.14Show/hide
Query:  KKNIKNCVCHHYLESG----MAINVIYEEKELGKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQNVDTSRVMPSEKEVYEQVMGKEHSGRVRG
        KKN KN     Y  +G     A  +  E ++ G+   R E+++  HK KDGSYM++E   + E+ +E + Q  ++SRV+ S+ +   QV GKE  GRVRG
Subjt:  KKNIKNCVCHHYLESG----MAINVIYEEKELGKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQNVDTSRVMPSEKEVYEQVMGKEHSGRVRG

Query:  MGLGPTPTEVFKTKYH---QCVGAEITSETSMENHEAVE-ERSRLTKLESEMVDMRYLLRRLFNLIPAVVKTAAI
        +G GPTP+++F    H     V  E T +  +E    +E E+ +   +E E    +  ++ + + +  ++KTAAI
Subjt:  MGLGPTPTEVFKTKYH---QCVGAEITSETSMENHEAVE-ERSRLTKLESEMVDMRYLLRRLFNLIPAVVKTAAI

XP_016494961.1 PREDICTED: uncharacterized protein LOC107814136 isoform X1 [Nicotiana tabacum]1.5e-1041.35Show/hide
Query:  ELGKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQN-VDTSRVMPSEKEVYEQVMGKEHSGRVRGMGLGPTPTEVFK-TKYHQCVGAEITSETS
        E G+ P R++++L  HK +DG+Y++E   ++ EK +  +SQ+ VD S V+P+  +   +V+GKEHSGRVR +GLG  P++VFK T+   C     +S+ S
Subjt:  ELGKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQN-VDTSRVMPSEKEVYEQVMGKEHSGRVRGMGLGPTPTEVFK-TKYHQCVGAEITSETS

Query:  MENH
          NH
Subjt:  MENH

XP_019255521.1 PREDICTED: uncharacterized protein LOC109234124 isoform X1 [Nicotiana attenuata]1.5e-1042.31Show/hide
Query:  ELGKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQN-VDTSRVMPSEKEVYEQVMGKEHSGRVRGMGLGPTPTEVFK-TKYHQCVGAEITSETS
        E G+ P R +++L  HK +DG+Y++E   K+ EK +  +SQ+ VD S V P+  +   +V+GKEHSGRVR +GLG  P++VFK  + H C     +S+ S
Subjt:  ELGKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQN-VDTSRVMPSEKEVYEQVMGKEHSGRVRGMGLGPTPTEVFK-TKYHQCVGAEITSETS

Query:  MENH
          NH
Subjt:  MENH

TrEMBL top hitse value%identityAlignment
A0A1S4C1D9 uncharacterized protein LOC107814136 isoform X17.1e-1141.35Show/hide
Query:  ELGKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQN-VDTSRVMPSEKEVYEQVMGKEHSGRVRGMGLGPTPTEVFK-TKYHQCVGAEITSETS
        E G+ P R++++L  HK +DG+Y++E   ++ EK +  +SQ+ VD S V+P+  +   +V+GKEHSGRVR +GLG  P++VFK T+   C     +S+ S
Subjt:  ELGKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQN-VDTSRVMPSEKEVYEQVMGKEHSGRVRGMGLGPTPTEVFK-TKYHQCVGAEITSETS

Query:  MENH
          NH
Subjt:  MENH

A0A438CKK3 Uncharacterized protein2.4e-1129.38Show/hide
Query:  LTVNGDIDVIGIQNSLFKKNIKNCVCHHYLESGMAINVIYE--EKELGKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQNVDTSRVMPSEK--
        + + G     G  +   K N    V  H   S     + YE  +KE   +P R+E+F   HK KDG+ +D+   +++++FQ+ +SQ   TS    +    
Subjt:  LTVNGDIDVIGIQNSLFKKNIKNCVCHHYLESGMAINVIYE--EKELGKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQNVDTSRVMPSEK--

Query:  -----EVYEQVMGKEHSGRVRGMGLGPTPTEVFKTKYHQCVGAEITSETSMENHEAVEERSRLTKLESEMVDMRYLL
             E+Y QVMG E  G VRG G GPTPT VF +   +  GA ++++        +    + T    E+ +++Y L
Subjt:  -----EVYEQVMGKEHSGRVRGMGLGPTPTEVFKTKYHQCVGAEITSETSMENHEAVEERSRLTKLESEMVDMRYLL

A0A6P4D9W7 uncharacterized protein LOC107478310 isoform X19.3e-1138.79Show/hide
Query:  KKNIKNCVCHHYLESG----MAINVIYEEKELGKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQNVDTSRVMPSEKEVYEQVMGKEHSGRVRG
        KKN KN     Y  +G     A  +  E ++ G+   R E+++  HK KDGSYM++E   + E+ +E + Q  ++SRV+ S+ +   QV GKE  GRVRG
Subjt:  KKNIKNCVCHHYLESG----MAINVIYEEKELGKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQNVDTSRVMPSEKEVYEQVMGKEHSGRVRG

Query:  MGLGPTPTEVFKTKYH
        +G GPTP+++F    H
Subjt:  MGLGPTPTEVFKTKYH

A0A6P4DAP9 uncharacterized protein LOC1074888209.3e-1138.79Show/hide
Query:  KKNIKNCVCHHYLESG----MAINVIYEEKELGKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQNVDTSRVMPSEKEVYEQVMGKEHSGRVRG
        KKN KN     Y  +G     A  +  E ++ G+   R E+++  HK KDGSYM++E   + E+ +E + Q  ++SRV+ S+ +   QV GKE  GRVRG
Subjt:  KKNIKNCVCHHYLESG----MAINVIYEEKELGKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQNVDTSRVMPSEKEVYEQVMGKEHSGRVRG

Query:  MGLGPTPTEVFKTKYH
        +G GPTP+++F    H
Subjt:  MGLGPTPTEVFKTKYH

A5AQY2 Uncharacterized protein4.2e-1131.25Show/hide
Query:  KKNIKNCVCHHYLESGMAINVIYE--EKELGKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQNVDTSRVMPSEK-------EVYEQVMGKEHS
        K N    V  H   S     + YE  +KE   +P R+E+F   HK KDG+ +D+   +++++FQ+ +SQ   TS    +         E+Y QVMG E  
Subjt:  KKNIKNCVCHHYLESGMAINVIYE--EKELGKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQNVDTSRVMPSEK-------EVYEQVMGKEHS

Query:  GRVRGMGLGPTPTEVFKTKYHQCVGAEITSETSMENHEAVEERSRLTKLESEMVDMRYLL
        G VRG G GPTPT VF +   +  GA ++++        +    + T    E+ +++Y L
Subjt:  GRVRGMGLGPTPTEVFKTKYHQCVGAEITSETSMENHEAVEERSRLTKLESEMVDMRYLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G40087.1 Plant transposase (Ptta/En/Spm family)3.0e-0630.25Show/hide
Query:  GKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQNVD-TSRVMPSEKEVYEQVMGKEHSGRVRGMGLGPTPTEVFKTKYHQCVGAEITSETSMEN
        GK P R E F+ + K  DGS++ +E     E     ++ N   T     S  + Y QV G E  GRVR +G GPTP+ + +        +  T    +EN
Subjt:  GKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQNVD-TSRVMPSEKEVYEQVMGKEHSGRVRGMGLGPTPTEVFKTKYHQCVGAEITSETSMEN

Query:  HEAVEERSRLTKLESEMVD
         E V +     K   + V+
Subjt:  HEAVEERSRLTKLESEMVD

AT1G42700.1 FUNCTIONS IN: molecular_function unknown4.9e-0430.56Show/hide
Query:  KLKDGSYMDEEFAKVVEKFQECMSQNV-DT--SRVMPSEKEVYEQVMGKEHSGRVRGMGLGPTPTEVFKTKYHQCVGAEITSETSMENHEAVEERSRLTK
        K +DG   +E     +EK  + + QN  DT  +   P+  + + QV G+E  GRVR +GLGPTP+   + +         T+ T  +  E +   +R+ +
Subjt:  KLKDGSYMDEEFAKVVEKFQECMSQNV-DT--SRVMPSEKEVYEQVMGKEHSGRVRGMGLGPTPTEVFKTKYHQCVGAEITSETSMENHEAVEERSRLTK

Query:  LESEMVDM
        LE ++V M
Subjt:  LESEMVDM

AT3G30200.1 Plant transposase (Ptta/En/Spm family)3.4e-0529.41Show/hide
Query:  GKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQNVD-TSRVMPSEKEVYEQVMGKEHSGRVRGMGLGPTPTEVFKTKYHQCVGAEITSETSMEN
        GK P RVE F+ + K  DGS++ +E           ++ N   T     S  + Y QV G E  GRV  +G GPTP+ + +        +  T    +EN
Subjt:  GKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQNVD-TSRVMPSEKEVYEQVMGKEHSGRVRGMGLGPTPTEVFKTKYHQCVGAEITSETSMEN

Query:  HEAVEERSRLTKLESEMVD
         E V +     K   + V+
Subjt:  HEAVEERSRLTKLESEMVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTTCAATTAGAAGTCGTCGTCATGTGGTGGTCATAGAGTCTGGTCCTTTAGAAGGAAACACTAGCAATTTGGAGGAAGCTAATGTTGATACAAAAGCTAATTTGAC
AGTTAATGGTGATATTGATGTAATAGGTATTCAAAATTCACTGTTCAAGAAAAACATAAAAAATTGTGTTTGTCATCATTATCTAGAAAGTGGGATGGCTATAAATGTAA
TCTACGAGGAAAAAGAGTTGGGGAAAGATCCCACCAGAGTAGAAGTCTTTCTAACTGCTCATAAGCTAAAGGATGGAAGTTACATGGATGAGGAGTTTGCTAAAGTTGTC
GAAAAATTTCAAGAATGTATGAGTCAAAATGTTGATACCTCAAGAGTTATGCCTTCTGAGAAGGAGGTGTATGAACAAGTCATGGGTAAAGAGCATTCTGGACGTGTTCG
TGGAATGGGATTAGGACCTACACCCACTGAAGTTTTTAAAACTAAATATCATCAATGTGTCGGGGCTGAGATCACTTCTGAGACAAGTATGGAAAACCATGAAGCTGTAG
AAGAAAGATCTAGATTAACAAAACTAGAGTCCGAAATGGTGGACATGCGGTACCTATTGCGGCGCTTATTTAATCTGATTCCAGCGGTTGTTAAAACCGCTGCAATAAAG
GCTTTCAACACAGCCTCTGCCAGCAGTTTCTTAACCGTTGCGACATATCTCCCAACGGTTTCAAACTGCCGCAATAGCTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTTCAATTAGAAGTCGTCGTCATGTGGTGGTCATAGAGTCTGGTCCTTTAGAAGGAAACACTAGCAATTTGGAGGAAGCTAATGTTGATACAAAAGCTAATTTGAC
AGTTAATGGTGATATTGATGTAATAGGTATTCAAAATTCACTGTTCAAGAAAAACATAAAAAATTGTGTTTGTCATCATTATCTAGAAAGTGGGATGGCTATAAATGTAA
TCTACGAGGAAAAAGAGTTGGGGAAAGATCCCACCAGAGTAGAAGTCTTTCTAACTGCTCATAAGCTAAAGGATGGAAGTTACATGGATGAGGAGTTTGCTAAAGTTGTC
GAAAAATTTCAAGAATGTATGAGTCAAAATGTTGATACCTCAAGAGTTATGCCTTCTGAGAAGGAGGTGTATGAACAAGTCATGGGTAAAGAGCATTCTGGACGTGTTCG
TGGAATGGGATTAGGACCTACACCCACTGAAGTTTTTAAAACTAAATATCATCAATGTGTCGGGGCTGAGATCACTTCTGAGACAAGTATGGAAAACCATGAAGCTGTAG
AAGAAAGATCTAGATTAACAAAACTAGAGTCCGAAATGGTGGACATGCGGTACCTATTGCGGCGCTTATTTAATCTGATTCCAGCGGTTGTTAAAACCGCTGCAATAAAG
GCTTTCAACACAGCCTCTGCCAGCAGTTTCTTAACCGTTGCGACATATCTCCCAACGGTTTCAAACTGCCGCAATAGCTCATAA
Protein sequenceShow/hide protein sequence
MPSIRSRRHVVVIESGPLEGNTSNLEEANVDTKANLTVNGDIDVIGIQNSLFKKNIKNCVCHHYLESGMAINVIYEEKELGKDPTRVEVFLTAHKLKDGSYMDEEFAKVV
EKFQECMSQNVDTSRVMPSEKEVYEQVMGKEHSGRVRGMGLGPTPTEVFKTKYHQCVGAEITSETSMENHEAVEERSRLTKLESEMVDMRYLLRRLFNLIPAVVKTAAIK
AFNTASASSFLTVATYLPTVSNCRNSS