CuGenDBv2

Gene ID	Lsi10G007350
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Ribosomal protein S19
Genome location	chr10:10156045..10160090
RNA-Seq Expression	Lsi10G007350
Synteny	Lsi10G007350
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR002222 - Ribosomal protein S19/S15 IPR020934 - Ribosomal protein S19 conserved site IPR023575 - Ribosomal protein S19/S15, superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

BAD83473.2 ribosomal protein S19 [Nicotiana tabacum]

1.5e-33

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Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDK
        M  RSIWK  FVDAFLL+MK K DP+ NRKIWSRRS+ILPEFV  SVRIYNGKTFVRCKITEG+VGHKFGEFA TRKRR  +TNIGPG RKKG K
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDK

YP_003587264.1 ribosomal protein S19 [Citrullus lanatus]

2.3e-34

81.72

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Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG
        M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKITEGRVGHKFGEFA+TRKRR+ +TNIGPG  KKG
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG

YP_003587364.1 ribosomal protein S19 [Cucurbita pepo]

7.9e-35

75.76

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Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKKDSH
        M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKITEGRVGHKFGEFA+TRKRR+ +TNIGPG +K+G+ + ++
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKKDSH

YP_003587380.1 ribosomal protein S19 [Cucurbita pepo]

7.9e-35

75.76

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Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKKDSH
        M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKITEGRVGHKFGEFA+TRKRR+ +TNIGPG +K+G+ + ++
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKKDSH

YP_009913640.1 ribosomal protein S19 [Luffa acutangula]

3.0e-34

81.72

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Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG
        M  RSIWK CFVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKT VRCKITEGRVGHKFGEFA TRKRR+ +TNIGPG  KKG
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG

TrEMBL top hits

e value

%identity

Alignment

A0A7D6C0E4 Ribosomal protein S19

1.5e-34

81.72

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Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG
        M  RSIWK CFVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKT VRCKITEGRVGHKFGEFA TRKRR+ +TNIGPG  KKG
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG

D5I3D4 Ribosomal protein S19

1.1e-34

81.72

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Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG
        M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKITEGRVGHKFGEFA+TRKRR+ +TNIGPG  KKG
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG

D5I3F0 Ribosomal protein S19

3.8e-35

75.76

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Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKKDSH
        M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKITEGRVGHKFGEFA+TRKRR+ +TNIGPG +K+G+ + ++
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKKDSH

D5I3G6 Ribosomal protein S19

3.8e-35

75.76

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Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKKDSH
        M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKITEGRVGHKFGEFA+TRKRR+ +TNIGPG +K+G+ + ++
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKKDSH

Q5MA05 Ribosomal protein S19

7.2e-34

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Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDK
        M  RSIWK  FVDAFLL+MK K DP+ NRKIWSRRS+ILPEFV  SVRIYNGKTFVRCKITEG+VGHKFGEFA TRKRR  +TNIGPG RKKG K
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDK

SwissProt top hits

e value

%identity

Alignment

B2S675 30S ribosomal protein S19

4.2e-15

47.96

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Query:  RSIWKSCFVDAFLLKMKNKI-----DPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKK
        RS+WK  FVD +LLK   K+     + V+  K+WSRRSTILP+FVG +  +YNG   V   ++E  VGHKFGEFA TR      T  G G  KK  +K
Subjt:  RSIWKSCFVDAFLLKMKNKI-----DPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKK

P26874 Ribosomal protein S19, mitochondrial

1.0e-16

57.14

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Query:  RSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTR------KRRVP-KTNIGP
        RSIWK  FVD  L K K      +  +IWSRRS ILP+FVG   +IYNGK FV  KITE  VGHKFGEFA TR      KR +P KT I P
Subjt:  RSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTR------KRRVP-KTNIGP

P27527 Ribosomal protein S19, mitochondrial

3.1e-34

76.84

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Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDK
        M  RSIWK  FVDAFLL+MK K D + NRKIWSRRS+ILPEFV   VRIYNGKTFVRCKITEG+VGHKFGEFA TRKRR  +TNIGPG RK+G K
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDK

P39697 40S ribosomal protein S19, mitochondrial

1.8e-26

75.32

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Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRK
        M  RS+WK  FVDAFL+K KN     LNRKIWSRRSTILPE+V ++VRIYNGKT VRCKITEG+VGHKFGEFA TRK
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRK

Q98N53 30S ribosomal protein S19

3.2e-15

47.96

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Query:  RSIWKSCFVDAFLLKMKNKI-----DPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKK
        RSIWK  F+D +LLK  +K+     + V+  K+WSRRSTILP+FVG +  +YNG+  V   + E  VGHKFGEFA TR      T  G G  KK  +K
Subjt:  RSIWKSCFVDAFLLKMKNKI-----DPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKK

Arabidopsis top hits

e value

%identity

Alignment

AT5G09490.1 Ribosomal protein S19 family protein

1.5e-04

40.91

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Query:  RRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRK
        R   I+PE +G+ + +YNGKTF + +I    +GH   EF++T K
Subjt:  RRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRK

AT5G47320.1 ribosomal protein S19

1.3e-27

75.32

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Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRK
        M  RS+WK  FVDAFL+K KN     LNRKIWSRRSTILPE+V ++VRIYNGKT VRCKITEG+VGHKFGEFA TRK
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRK

ATCG00820.1 ribosomal protein S19

1.8e-08

38.67

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Query:  RSIWKSCFVDAFLLKMKNKIDPVLNRKI---WSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMT
        RS+ K+ FV   LL+   K++    ++I   WSR STI+P  +G+++ I+NG+  +   I +  VGHK GEF+ T
Subjt:  RSIWKSCFVDAFLLKMKNKIDPVLNRKI---WSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMT

Sequences

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CDS sequence

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ATGTCGCCACGATCTATATGGAAGAGCTGTTTTGTTGATGCATTTCTGTTGAAAATGAAGAATAAGATAGATCCTGTTTTGAACAGGAAAATTTGGTCACGTAGATCTAC
GATTTTGCCGGAATTCGTTGGTAACTCCGTACGAATTTACAATGGAAAAACTTTTGTTCGCTGTAAGATCACTGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCTA
TGACACGGAAACGAAGAGTTCCAAAAACAAATATTGGACCTGGACCGCGAAAAAAGGGGGATAAAAAAGACAGTCATCGTTTGACGTTTGATATTGCCACAGCTCTCGTT
GTTTCGACTATCTCTGCTGTTCTTGTTACTCCTAATCCGAGGCTTGAACAATGGGTGACTAAAGATCAAGCACTCCTTGGGTGGTTGTTTGGATCAATGACGTCAGCTAT
TGCCACAGAAGTCCATCTATTTGGTGCAACAAATGCTAAGAGCAATTCTACAAACCACAAGAAAGGGAATTATGAATATGGCAGAATACTTCTTGTCTCTGAAAGCTGGG
TCACCAGTGCCAGCTGTGGTGGGGGATCGTCTGGTGCCAGCTGTGGTGGTTTCGATGCTAGTTATGGTGGGGGATCATCTTCGACTTGTAGTCTCGGCTATGGTGTGAGA
TCGTTTGGTGCCAGCTATGGTGGGGTATCGACTTCCGATGCTAGCTGTGGTGGTTTCGGAGCCAACTGTGCTGGGGGATTGTCTTCCACTGCTAGTTGTGGTGATTCCGG
TGCCAGTTGTGGTCAGGGATCCTCTTCCCGTGCCAGTGGTACTCGAAAATCCACTTGTAGTGTCTGCTGTGGTGGGAGAAGGTCTCCCCAAGCTGGTGTTACTGGGCGAA
CGCCTGGTCGCGCTAAATAG

mRNA sequence

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Protein sequence

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MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKKDSHRLTFDIATALV
VSTISAVLVTPNPRLEQWVTKDQALLGWLFGSMTSAIATEVHLFGATNAKSNSTNHKKGNYEYGRILLVSESWVTSASCGGGSSGASCGGFDASYGGGSSSTCSLGYGVR
SFGASYGGVSTSDASCGGFGANCAGGLSSTASCGDSGASCGQGSSSRASGTRKSTCSVCCGGRRSPQAGVTGRTPGRAK

Lsi10G007350 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome