CuGenDBv2

Gene ID	Lsi10G007470
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	U2 small nuclear ribonucleoprotein auxiliary factor-like protein
Genome location	chr10:10304890..10309348
RNA-Seq Expression	Lsi10G007470
Synteny	Lsi10G007470
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004147362.2 uncharacterized protein LOC101217609 isoform X2 [Cucumis sativus]

4.9e-119

79.38

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Query:  MELQDFAPIFGEPTRVEWINRGSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASMNFGDVRLCMEGQSG
        MELQDFAPIFG+PTRVEW+NRGSL L QFLFHVY+PNPS LRFL TDFHSNTWESTKSA QLEDMRDDIGIGGAFSEFV+YIVASM FGDVRLCMEGQSG
Subjt:  MELQDFAPIFGEPTRVEWINRGSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASMNFGDVRLCMEGQSG

Query:  EDGAACVKLIAQKSKGMPVFSISLTKLIGSAASEAMATLSLGLFNSLKHKECSLIKEQEHSLQLTTLISTEKEKNDNFQTQLGQYRKKQKLQNMNASNSP
        +DGAA VKLIAQKSKGMPVFSISLTKL+ SAA+EAMAT+SLGLFNSLK KECSL+KEQEHSLQLTT+ISTEKEKN+N QTQLGQYRKKQKLQNMNASNSP
Subjt:  EDGAACVKLIAQKSKGMPVFSISLTKLIGSAASEAMATLSLGLFNSLKHKECSLIKEQEHSLQLTTLISTEKEKNDNFQTQLGQYRKKQKLQNMNASNSP

Query:  DKSVVHNIGSTNVTNRVVPAHRRAKTRGALLQDSEDDNGRTRALPP----------IDIRGK----------GQEHEVLFSKIIKTTMEGK
        DKS VHNIG T  TNRVVP HRRAK RGALLQDSEDDN + R+L            I  R K          GQEHEV F KI K TMEGK
Subjt:  DKSVVHNIGSTNVTNRVVPAHRRAKTRGALLQDSEDDNGRTRALPP----------IDIRGK----------GQEHEVLFSKIIKTTMEGK

XP_008460879.1 PREDICTED: uncharacterized protein LOC103499622 isoform X1 [Cucumis melo]

1.3e-119

90.57

Show/hide

Query:  MELQDFAPIFGEPTRVEWINRGSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASMNFGDVRLCMEGQSG
        MELQDFAPIFGEPTRVEW+NRGSL LHQFLFHVYTP+PSQLRFL TDFHSNTWESTKSA QLEDMRDDIGIGGAFSEFV+YIVASM FGDVRLCMEGQSG
Subjt:  MELQDFAPIFGEPTRVEWINRGSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASMNFGDVRLCMEGQSG

Query:  EDGAACVKLIAQKSKGMPVFSISLTKLIGSAASEAMATLSLGLFNSLKHKECSLIKEQEHSLQLTTLISTEKEKNDNFQTQLGQYRKKQKLQNMNASNSP
        +DGAACVKLIAQKSKGMPVFSISLTKLI SAASEAMAT+SLGLFNSLK KECSL+KEQEHSLQL T+ISTEKEKN+N QTQLGQYRKKQKLQNMNASNSP
Subjt:  EDGAACVKLIAQKSKGMPVFSISLTKLIGSAASEAMATLSLGLFNSLKHKECSLIKEQEHSLQLTTLISTEKEKNDNFQTQLGQYRKKQKLQNMNASNSP

Query:  DKSVVHNIGSTNVTNRVVPAHRRAKTRGALLQDSEDDNGRTRAL
        DKS VHNIGST  TNRVVPAHRRAKTRGALLQDSEDDN + R+L
Subjt:  DKSVVHNIGSTNVTNRVVPAHRRAKTRGALLQDSEDDNGRTRAL

XP_011649429.1 uncharacterized protein LOC101217609 isoform X1 [Cucumis sativus]

3.6e-114

87.3

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Query:  MELQDFAPIFGEPTRVEWINRGSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASMNFGDVRLCMEGQSG
        MELQDFAPIFG+PTRVEW+NRGSL L QFLFHVY+PNPS LRFL TDFHSNTWESTKSA QLEDMRDDIGIGGAFSEFV+YIVASM FGDVRLCMEGQSG
Subjt:  MELQDFAPIFGEPTRVEWINRGSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASMNFGDVRLCMEGQSG

Query:  EDGAACVKLIAQKSKGMPVFSISLTKLIGSAASEAMATLSLGLFNSLKHKECSLIKEQEHSLQLTTLISTEKEKNDNFQTQLGQYRKKQKLQNMNASNSP
        +DGAA VKLIAQKSKGMPVFSISLTKL+ SAA+EAMAT+SLGLFNSLK KECSL+KEQEHSLQLTT+ISTEKEKN+N QTQLGQYRKKQKLQNMNASNSP
Subjt:  EDGAACVKLIAQKSKGMPVFSISLTKLIGSAASEAMATLSLGLFNSLKHKECSLIKEQEHSLQLTTLISTEKEKNDNFQTQLGQYRKKQKLQNMNASNSP

Query:  DKSVVHNIGSTNVTNRVVPAHRRAKTRGALLQDSEDDNGRTRAL
        DKS VHNIG T  TNRVVP HRRAK RGALLQDSEDDN + R+L
Subjt:  DKSVVHNIGSTNVTNRVVPAHRRAKTRGALLQDSEDDNGRTRAL

XP_038902923.1 uncharacterized protein LOC120089505 isoform X1 [Benincasa hispida]

1.1e-121

88.8

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Query:  MELQDFAPIFGEPTRVEWINRGSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASMNFGDVRLCMEGQSG
        MELQDFAPIFGEPTRVEWIN+GSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASM FGDVRLCMEGQSG
Subjt:  MELQDFAPIFGEPTRVEWINRGSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASMNFGDVRLCMEGQSG

Query:  EDGAACVKLIAQKSKGMPVFSISLTKLIGSAASEAMATLSLGLFNSLKHKECSLIKEQEHSLQLTTLISTEKEKNDNFQTQLGQYRKKQKLQNMNASNSP
        +DGAACVKLIAQKSKGMPVFSISLTKLI SAASEAMATLS GLFNSLKHKECSLIKEQEHSLQLTT+ISTEKEKN+N QTQL QYRKKQKLQNMNASNSP
Subjt:  EDGAACVKLIAQKSKGMPVFSISLTKLIGSAASEAMATLSLGLFNSLKHKECSLIKEQEHSLQLTTLISTEKEKNDNFQTQLGQYRKKQKLQNMNASNSP

Query:  DKSVVHNIGSTNVTNRVVPAHRRAKTRGALLQDSEDDNGRTRALPPIDIRGKGQEHEVL
        DKSVV+NIG T  TNRVVPAHRRAKTRGALLQDSEDDN    +L       K ++HE+L
Subjt:  DKSVVHNIGSTNVTNRVVPAHRRAKTRGALLQDSEDDNGRTRALPPIDIRGKGQEHEVL

XP_038902924.1 uncharacterized protein LOC120089505 isoform X2 [Benincasa hispida]

1.1e-121

88.8

Show/hide

Query:  MELQDFAPIFGEPTRVEWINRGSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASMNFGDVRLCMEGQSG
        MELQDFAPIFGEPTRVEWIN+GSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASM FGDVRLCMEGQSG
Subjt:  MELQDFAPIFGEPTRVEWINRGSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASMNFGDVRLCMEGQSG

Query:  EDGAACVKLIAQKSKGMPVFSISLTKLIGSAASEAMATLSLGLFNSLKHKECSLIKEQEHSLQLTTLISTEKEKNDNFQTQLGQYRKKQKLQNMNASNSP
        +DGAACVKLIAQKSKGMPVFSISLTKLI SAASEAMATLS GLFNSLKHKECSLIKEQEHSLQLTT+ISTEKEKN+N QTQL QYRKKQKLQNMNASNSP
Subjt:  EDGAACVKLIAQKSKGMPVFSISLTKLIGSAASEAMATLSLGLFNSLKHKECSLIKEQEHSLQLTTLISTEKEKNDNFQTQLGQYRKKQKLQNMNASNSP

Query:  DKSVVHNIGSTNVTNRVVPAHRRAKTRGALLQDSEDDNGRTRALPPIDIRGKGQEHEVL
        DKSVV+NIG T  TNRVVPAHRRAKTRGALLQDSEDDN    +L       K ++HE+L
Subjt:  DKSVVHNIGSTNVTNRVVPAHRRAKTRGALLQDSEDDNGRTRALPPIDIRGKGQEHEVL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LK82 Uncharacterized protein

1.8e-114

87.3

Show/hide

Query:  MELQDFAPIFGEPTRVEWINRGSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASMNFGDVRLCMEGQSG
        MELQDFAPIFG+PTRVEW+NRGSL L QFLFHVY+PNPS LRFL TDFHSNTWESTKSA QLEDMRDDIGIGGAFSEFV+YIVASM FGDVRLCMEGQSG
Subjt:  MELQDFAPIFGEPTRVEWINRGSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASMNFGDVRLCMEGQSG

Query:  EDGAACVKLIAQKSKGMPVFSISLTKLIGSAASEAMATLSLGLFNSLKHKECSLIKEQEHSLQLTTLISTEKEKNDNFQTQLGQYRKKQKLQNMNASNSP
        +DGAA VKLIAQKSKGMPVFSISLTKL+ SAA+EAMAT+SLGLFNSLK KECSL+KEQEHSLQLTT+ISTEKEKN+N QTQLGQYRKKQKLQNMNASNSP
Subjt:  EDGAACVKLIAQKSKGMPVFSISLTKLIGSAASEAMATLSLGLFNSLKHKECSLIKEQEHSLQLTTLISTEKEKNDNFQTQLGQYRKKQKLQNMNASNSP

Query:  DKSVVHNIGSTNVTNRVVPAHRRAKTRGALLQDSEDDNGRTRAL
        DKS VHNIG T  TNRVVP HRRAK RGALLQDSEDDN + R+L
Subjt:  DKSVVHNIGSTNVTNRVVPAHRRAKTRGALLQDSEDDNGRTRAL

A0A1S3CDX2 uncharacterized protein LOC103499622 isoform X1

6.3e-120

90.57

Show/hide

Query:  MELQDFAPIFGEPTRVEWINRGSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASMNFGDVRLCMEGQSG
        MELQDFAPIFGEPTRVEW+NRGSL LHQFLFHVYTP+PSQLRFL TDFHSNTWESTKSA QLEDMRDDIGIGGAFSEFV+YIVASM FGDVRLCMEGQSG
Subjt:  MELQDFAPIFGEPTRVEWINRGSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASMNFGDVRLCMEGQSG

Query:  EDGAACVKLIAQKSKGMPVFSISLTKLIGSAASEAMATLSLGLFNSLKHKECSLIKEQEHSLQLTTLISTEKEKNDNFQTQLGQYRKKQKLQNMNASNSP
        +DGAACVKLIAQKSKGMPVFSISLTKLI SAASEAMAT+SLGLFNSLK KECSL+KEQEHSLQL T+ISTEKEKN+N QTQLGQYRKKQKLQNMNASNSP
Subjt:  EDGAACVKLIAQKSKGMPVFSISLTKLIGSAASEAMATLSLGLFNSLKHKECSLIKEQEHSLQLTTLISTEKEKNDNFQTQLGQYRKKQKLQNMNASNSP

Query:  DKSVVHNIGSTNVTNRVVPAHRRAKTRGALLQDSEDDNGRTRAL
        DKS VHNIGST  TNRVVPAHRRAKTRGALLQDSEDDN + R+L
Subjt:  DKSVVHNIGSTNVTNRVVPAHRRAKTRGALLQDSEDDNGRTRAL

A0A5A7TGG1 Uncharacterized protein

6.3e-120

90.57

Show/hide

Query:  MELQDFAPIFGEPTRVEWINRGSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASMNFGDVRLCMEGQSG
        MELQDFAPIFGEPTRVEW+NRGSL LHQFLFHVYTP+PSQLRFL TDFHSNTWESTKSA QLEDMRDDIGIGGAFSEFV+YIVASM FGDVRLCMEGQSG
Subjt:  MELQDFAPIFGEPTRVEWINRGSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASMNFGDVRLCMEGQSG

Query:  EDGAACVKLIAQKSKGMPVFSISLTKLIGSAASEAMATLSLGLFNSLKHKECSLIKEQEHSLQLTTLISTEKEKNDNFQTQLGQYRKKQKLQNMNASNSP
        +DGAACVKLIAQKSKGMPVFSISLTKLI SAASEAMAT+SLGLFNSLK KECSL+KEQEHSLQL T+ISTEKEKN+N QTQLGQYRKKQKLQNMNASNSP
Subjt:  EDGAACVKLIAQKSKGMPVFSISLTKLIGSAASEAMATLSLGLFNSLKHKECSLIKEQEHSLQLTTLISTEKEKNDNFQTQLGQYRKKQKLQNMNASNSP

Query:  DKSVVHNIGSTNVTNRVVPAHRRAKTRGALLQDSEDDNGRTRAL
        DKS VHNIGST  TNRVVPAHRRAKTRGALLQDSEDDN + R+L
Subjt:  DKSVVHNIGSTNVTNRVVPAHRRAKTRGALLQDSEDDNGRTRAL

A0A6J1L4C1 uncharacterized protein LOC111499771 isoform X2

4.8e-96

76.73

Show/hide

Query:  MELQDFAPIFGEPTRVEWINRGSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASMNFGDVRLCMEGQSG
        ME+ DFA IFGEP +VEWINR SL  H FLFHV+TPNPS LRF  TDFHSNTWESTKS LQL DMRD+IGIGGA SEFV+YI+ S+ FGDVRL +E QS 
Subjt:  MELQDFAPIFGEPTRVEWINRGSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASMNFGDVRLCMEGQSG

Query:  EDGAACVKLIAQKSKGMPVFSISLTKLIGSAASEAMATLSLGLFNSLKHKECSLIKEQEHSLQLTTLISTEKEKNDNFQTQLGQYRKKQKLQNMNASNSP
        +DGAAC KL AQKSKGMPVFS+SLTKL   AASEA+ATLSLGLFNSLK KECSL+KEQE SLQLTT+ISTEKEK ++ Q+QLGQY KKQKLQNMNASNSP
Subjt:  EDGAACVKLIAQKSKGMPVFSISLTKLIGSAASEAMATLSLGLFNSLKHKECSLIKEQEHSLQLTTLISTEKEKNDNFQTQLGQYRKKQKLQNMNASNSP

Query:  DKSVVHN-IGSTNVTNRVVPAHRRAKTRGALLQDSEDDNGRTRAL
        DKS+ H+ IG T  TNR VPAHRRAKTRGALLQDSEDDN +  +L
Subjt:  DKSVVHN-IGSTNVTNRVVPAHRRAKTRGALLQDSEDDNGRTRAL

A0A6J1L735 uncharacterized protein LOC111499771 isoform X1

4.8e-96

76.73

Show/hide

Query:  MELQDFAPIFGEPTRVEWINRGSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASMNFGDVRLCMEGQSG
        ME+ DFA IFGEP +VEWINR SL  H FLFHV+TPNPS LRF  TDFHSNTWESTKS LQL DMRD+IGIGGA SEFV+YI+ S+ FGDVRL +E QS 
Subjt:  MELQDFAPIFGEPTRVEWINRGSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASMNFGDVRLCMEGQSG

Query:  EDGAACVKLIAQKSKGMPVFSISLTKLIGSAASEAMATLSLGLFNSLKHKECSLIKEQEHSLQLTTLISTEKEKNDNFQTQLGQYRKKQKLQNMNASNSP
        +DGAAC KL AQKSKGMPVFS+SLTKL   AASEA+ATLSLGLFNSLK KECSL+KEQE SLQLTT+ISTEKEK ++ Q+QLGQY KKQKLQNMNASNSP
Subjt:  EDGAACVKLIAQKSKGMPVFSISLTKLIGSAASEAMATLSLGLFNSLKHKECSLIKEQEHSLQLTTLISTEKEKNDNFQTQLGQYRKKQKLQNMNASNSP

Query:  DKSVVHN-IGSTNVTNRVVPAHRRAKTRGALLQDSEDDNGRTRAL
        DKS+ H+ IG T  TNR VPAHRRAKTRGALLQDSEDDN +  +L
Subjt:  DKSVVHN-IGSTNVTNRVVPAHRRAKTRGALLQDSEDDNGRTRAL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G64010.1 unknown protein

4.1e-39

40.76

Show/hide

Query:  QDFAPIFGEPTRVEWINRGSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASMNFGDVRLCMEGQSGEDG
        + F PIFGE    E  + GS  L + LFHVY  +   L    TDF S  W +  S  QL+DMRD +GIGG++SEFV+Y VAS+   +V+L +   S  +G
Subjt:  QDFAPIFGEPTRVEWINRGSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASMNFGDVRLCMEGQSGEDG

Query:  AACVKLIAQKSKGMPVFSISLTKLIGSAASEAMATLSLGLFNSLKHKECSLIKEQEHSLQLTTLISTEKEKNDNFQTQLGQYRKKQKLQNMNASNSPDKS
            +L++QK+KGMP  ++ LTK++ S+ASEAMA LSL LF + K K+       +  +  +   + EK+K D    QL +Y +K  +   + +N  D  
Subjt:  AACVKLIAQKSKGMPVFSISLTKLIGSAASEAMATLSLGLFNSLKHKECSLIKEQEHSLQLTTLISTEKEKNDNFQTQLGQYRKKQKLQNMNASNSPDKS

Query:  VVHNIGSTNVTNRV--VPAHRRAKTRGALLQDSEDDNG
           +    N  N V  VPAHRR + RGALLQDSE+++G
Subjt:  VVHNIGSTNVTNRV--VPAHRRAKTRGALLQDSEDDNG

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAGCTTCAAGATTTTGCGCCAATTTTTGGGGAACCCACCAGAGTGGAGTGGATAAACAGGGGTTCGCTTCCTTTGCACCAATTTTTGTTCCATGTTTATACTCCAAA
TCCTTCGCAACTCAGATTTCTTGCTACTGATTTCCATTCTAACACATGGGAATCCACCAAATCAGCTTTGCAGCTTGAGGATATGAGAGATGACATTGGAATTGGAGGGG
CTTTTTCAGAGTTTGTTAATTATATTGTTGCTTCCATGAATTTTGGAGATGTAAGGCTTTGTATGGAAGGACAATCGGGGGAAGATGGTGCAGCATGTGTCAAACTAATT
GCTCAGAAATCAAAAGGAATGCCTGTTTTTTCCATTTCTCTAACCAAACTCATTGGCTCTGCTGCTTCTGAAGCTATGGCAACTCTGTCCTTGGGACTCTTTAACTCATT
AAAACACAAGGAATGTTCACTTATAAAAGAACAAGAGCACTCCCTTCAGTTGACAACCCTGATTTCAACTGAAAAGGAAAAGAACGATAATTTTCAAACTCAGCTCGGGC
AATATAGAAAGAAACAGAAGTTGCAAAATATGAATGCCTCAAATTCTCCAGACAAGTCTGTTGTTCATAATATTGGCTCAACAAATGTCACCAATCGAGTGGTGCCAGCA
CATCGGAGGGCAAAAACTAGGGGTGCTCTTCTACAAGACTCTGAAGATGACAATGGTAGAACAAGAGCGCTCCCTCCAATCGACATTCGAGGAAAAGGGCAAGAACACGA
GGTGCTCTTCTCCAAGATAATAAAGACGACCATGGAAGGTAAAACCAGACACTTTCGATGTTGGGTCCTTAGGTTTGATATGGAGTAG

mRNA sequence

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Protein sequence

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MELQDFAPIFGEPTRVEWINRGSLPLHQFLFHVYTPNPSQLRFLATDFHSNTWESTKSALQLEDMRDDIGIGGAFSEFVNYIVASMNFGDVRLCMEGQSGEDGAACVKLI
AQKSKGMPVFSISLTKLIGSAASEAMATLSLGLFNSLKHKECSLIKEQEHSLQLTTLISTEKEKNDNFQTQLGQYRKKQKLQNMNASNSPDKSVVHNIGSTNVTNRVVPA
HRRAKTRGALLQDSEDDNGRTRALPPIDIRGKGQEHEVLFSKIIKTTMEGKTRHFRCWVLRFDME

Lsi10G007470 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome