; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G007500 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G007500
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionagamous-like MADS-box protein AGL103
Genome locationchr10:10337886..10345004
RNA-Seq ExpressionLsi10G007500
SyntenyLsi10G007500
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571340.1 MADS-box transcription factor PHERES 2, partial [Cucurbita argyrosperma subsp. sororia]6.0e-4984.17Show/hide
Query:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERK
        MGRGKLSM+LI NEKSRKTTF KRK SLLRKAYELSTLCDVRACVFVYGPN NDQS ++L+TWP CRE VN MIASYKANCLHKRARKAF L DFFSERK
Subjt:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERK

Query:  KKIEADVSKLRKDVAEASFP
        KK+E D+SKLRKDV EA FP
Subjt:  KKIEADVSKLRKDVAEASFP

KAG7011113.1 MADS-box transcription factor PHERES 2, partial [Cucurbita argyrosperma subsp. argyrosperma]6.0e-4984.17Show/hide
Query:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERK
        MGRGKLSM+LI NEKSRKTTF KRK SLLRKAYELSTLCDVRACVFVYGPN NDQS ++L+TWP CRE VN MIASYKANCLHKRARKAF L DFFSERK
Subjt:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERK

Query:  KKIEADVSKLRKDVAEASFP
        KK+E D+SKLRKDV EA FP
Subjt:  KKIEADVSKLRKDVAEASFP

XP_008460878.1 PREDICTED: MADS-box protein SOC1-like [Cucumis melo]7.1e-5086.67Show/hide
Query:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQ-NDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSER
        MGRGKLSMKLISNEKSRKTTF+KRKASLLRKAYELSTLCDVR CVFV+GPNQ NDQS LQLHTWP C + VN MIASYK NCLHKRARKAFGL DFFSER
Subjt:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQ-NDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSER

Query:  KKKIEADVSKLRKDVAEASF
        KKK+E D+SKLRKDVAEA F
Subjt:  KKKIEADVSKLRKDVAEASF

XP_023512369.1 agamous-like MADS-box protein AGL103 [Cucurbita pepo subsp. pepo]6.0e-4984.17Show/hide
Query:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERK
        MGRGKLSM+LI NEKSRKTTF KRK SLLRKAYELSTLCDVRACVFVYGPN NDQS ++L+TWP CRE VN MIASYKANCLHKRARKAF L DFFSERK
Subjt:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERK

Query:  KKIEADVSKLRKDVAEASFP
        KK+E D+SKLRKDV EA FP
Subjt:  KKIEADVSKLRKDVAEASFP

XP_038890378.1 floral homeotic protein FBP1-like [Benincasa hispida]1.1e-5085.83Show/hide
Query:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERK
        MGRGKLSMKLI NEKSRKTTFYKRKASLLRKAYELSTLCDVR CVFVYGPNQNDQS  Q+HTWP CRE VN +IASYK NCLHKRA KA GL DFFSERK
Subjt:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERK

Query:  KKIEADVSKLRKDVAEASFP
        KKIE D+SKLRKDVA+A FP
Subjt:  KKIEADVSKLRKDVAEASFP

TrEMBL top hitse value%identityAlignment
A0A0A0LME6 MADS-box domain-containing protein4.6e-4781.15Show/hide
Query:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQ-NDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSER
        MGRGKLSMKLISNEKSRKTTF+KRKASLLRKAYELSTLCDVR CV V+GPNQ NDQS LQLHTWP   + VN MIASYK NCL+KR RK+FGL DFFSER
Subjt:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQ-NDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSER

Query:  KKKIEADVSKLRKDVAEASFPS
        KKK+E D+SKLRKDV+E  FPS
Subjt:  KKKIEADVSKLRKDVAEASFPS

A0A1S3CDG6 MADS-box protein SOC1-like3.4e-5086.67Show/hide
Query:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQ-NDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSER
        MGRGKLSMKLISNEKSRKTTF+KRKASLLRKAYELSTLCDVR CVFV+GPNQ NDQS LQLHTWP C + VN MIASYK NCLHKRARKAFGL DFFSER
Subjt:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQ-NDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSER

Query:  KKKIEADVSKLRKDVAEASF
        KKK+E D+SKLRKDVAEA F
Subjt:  KKKIEADVSKLRKDVAEASF

A0A5D3BUZ8 MADS-box protein SOC1-like3.4e-5086.67Show/hide
Query:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQ-NDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSER
        MGRGKLSMKLISNEKSRKTTF+KRKASLLRKAYELSTLCDVR CVFV+GPNQ NDQS LQLHTWP C + VN MIASYK NCLHKRARKAFGL DFFSER
Subjt:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQ-NDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSER

Query:  KKKIEADVSKLRKDVAEASF
        KKK+E D+SKLRKDVAEA F
Subjt:  KKKIEADVSKLRKDVAEASF

A0A6J1EVI5 agamous-like MADS-box protein AGL1032.9e-4984.17Show/hide
Query:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERK
        MGRGKLSM+LI NEKSRKTTF KRK SLLRKAYELSTLCDVRACVFVYGPN NDQS ++L+TWP CRE VN MIASYKANCLHKRARKAF L DFFSERK
Subjt:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERK

Query:  KKIEADVSKLRKDVAEASFP
        KK+E D+SKLRKDV EA FP
Subjt:  KKIEADVSKLRKDVAEASFP

A0A6J1ICD8 agamous-like MADS-box protein AGL1032.1e-4781.67Show/hide
Query:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERK
        MGRGKLSM+LI NEKSRKTTF KRK SLLRKAYELSTLCDVR CV V+GPN NDQS  +L+TWP CRE VN MIASYKANCLHKRARKAF L DFFSERK
Subjt:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERK

Query:  KKIEADVSKLRKDVAEASFP
        KK+E D+SKLRKDV EA FP
Subjt:  KKIEADVSKLRKDVAEASFP

SwissProt top hitse value%identityAlignment
O80805 MADS-box transcription factor PHERES 11.4e-0836.04Show/hide
Query:  RGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERKKK
        RGK+ +  I N+  RKTTF KRK  +L+K  EL TLC V AC  +  P  + Q       WPS RE V E+++ +    +  R +K      F  +R  K
Subjt:  RGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERKKK

Query:  IEADVSKLRKD
            + KLR +
Subjt:  IEADVSKLRKD

Q7XJK5 Agamous-like MADS-box protein AGL909.1e-0833.93Show/hide
Query:  KLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERKKKIE
        K+ + LI+NE+SRKT+F KRK  + +K +ELSTLC V+AC  +Y P           +WPS RE   ++ + +       R RK         ER  K +
Subjt:  KLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERKKKIE

Query:  ADVSKLRKDVAE
          +  L  +  E
Subjt:  ADVSKLRKDVAE

Q7XJK8 MADS-box transcription factor PHERES 23.7e-0936.7Show/hide
Query:  KLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERKKKIE
        K+ + LI N  SRKTTF KRK  + +K  EL TLC V AC  VY P  +         WPS RE V ++++ +    +  R +K      F S+R  K +
Subjt:  KLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERKKKIE

Query:  ADVSKLRKD
          + KLR +
Subjt:  ADVSKLRKD

Q9FIM0 Agamous-like MADS-box protein AGL821.1e-0843.24Show/hide
Query:  LSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQ-NDQSTLQLHTWPSCREHVNEMIASYK
        + ++ I+N+K+R TT+ KRKASL +KA E STLC V  C+ VYGP +  D    +   WP     V  +I  YK
Subjt:  LSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQ-NDQSTLQLHTWPSCREHVNEMIASYK

Q9FJK3 Agamous-like MADS-box protein AGL804.8e-0932.76Show/hide
Query:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERK
        M R K+ +  ISN+ SRK TF KRK  L++K +ELSTLC + AC  +Y P   +        WPS    V  +++ ++      + +K      F  +R 
Subjt:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERK

Query:  KKIEADVSKLRKDVAE
         K    + + RKD  E
Subjt:  KKIEADVSKLRKDVAE

Arabidopsis top hitse value%identityAlignment
AT1G65300.1 AGAMOUS-like 382.6e-1036.7Show/hide
Query:  KLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERKKKIE
        K+ + LI N  SRKTTF KRK  + +K  EL TLC V AC  VY P  +         WPS RE V ++++ +    +  R +K      F S+R  K +
Subjt:  KLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERKKKIE

Query:  ADVSKLRKD
          + KLR +
Subjt:  ADVSKLRKD

AT5G26630.1 MADS-box transcription factor family protein3.4e-1036.21Show/hide
Query:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERK
        M R K+ M  I NE +RK+TF KRK  LL+KA EL  LC V     V  P +     L    WPS RE  N++++ +K   +  + +K      F  +R 
Subjt:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERK

Query:  KKIEADVSKLRKDVAE
         K      KLRK+  E
Subjt:  KKIEADVSKLRKDVAE

AT5G48670.1 AGAMOUS-like 803.4e-1032.76Show/hide
Query:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERK
        M R K+ +  ISN+ SRK TF KRK  L++K +ELSTLC + AC  +Y P   +        WPS    V  +++ ++      + +K      F  +R 
Subjt:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSERK

Query:  KKIEADVSKLRKDVAE
         K    + + RKD  E
Subjt:  KKIEADVSKLRKDVAE

AT5G55690.1 MADS-box transcription factor family protein2.8e-1237.14Show/hide
Query:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQ-NDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSER
        MGR  + M  I+NEK+R TT+ KRKA L +KA E STLC V  CV VYGP++  D+  ++   WP     V E++  Y+ +       K + + +   + 
Subjt:  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQ-NDQSTLQLHTWPSCREHVNEMIASYKANCLHKRARKAFGLFDFFSER

Query:  KKKIE
          K+E
Subjt:  KKKIE

AT5G58890.1 AGAMOUS-like 827.6e-1043.24Show/hide
Query:  LSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQ-NDQSTLQLHTWPSCREHVNEMIASYK
        + ++ I+N+K+R TT+ KRKASL +KA E STLC V  C+ VYGP +  D    +   WP     V  +I  YK
Subjt:  LSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQ-NDQSTLQLHTWPSCREHVNEMIASYK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCTTTCGTGTCCGACAAGAAACCTATTCGGTCTATACCTCAGCCGCACCACCGCCATAGTACCGCCGTGATGGGAAGAGGAAAATTGAGCATGAAACTGATCAG
TAATGAGAAATCTCGAAAGACGACGTTTTATAAGCGGAAAGCAAGTTTGTTGCGAAAAGCTTATGAGCTGTCTACACTGTGCGATGTTCGTGCTTGTGTCTTTGTCTATG
GCCCTAACCAAAATGACCAATCTACCCTCCAACTTCACACGTGGCCCTCGTGTCGGGAACACGTCAACGAAATGATCGCTTCTTACAAGGCTAACTGTCTCCATAAACGT
GCTCGCAAGGCTTTCGGTCTCTTCGACTTCTTCTCCGAGAGGAAGAAGAAGATTGAAGCTGACGTGTCCAAGCTTCGCAAGGATGTTGCTGAAGCCAGCTTTCCCTCCAA
CAAACCCCCCTCTCACGATTTCCCTCATCCTCTCCCTCTCACTCACAATCTTCATCTTCCTCTCCCTATCCCTCTCACAGCAGTTCGCGCAGAACATTTCTCCAGCAGTT
TCGTCGCACAGCAGTGGTTCGCCGCCGCTGTCGCACAGCAGCAGTCCACCGCCGACGTCGCACAGCAGCAGTCCGCTGCCGCCGTCGCACAGCAGAAGTTCGCCGCCGCC
GTCGCACAGCAGAAGTCCGCCGGCCCCGTCGCACAGCAGCAGTTCGCCGCCGTCGTCGCACAGCAGATCCTCCGCCGCCGCAGTCGCACAGTAGATCCTCTGCCATCGCC
GCCGCACAGCAGCTTCCGAAAGTCGCTGTTGTTTTCAGTAAGGTCTTTCAAGAGTGTGAAAAAGAAGAAGCTTACTTGGAAATCAATCAAATTGGTCTTTGAAATATTCG
AGAAAGATGTTATGTGGAAAGAATACGCTCACTTAGACGAGTTGTTATACTTCTTAGAGGTTGGACAAGTTTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCTTTCGTGTCCGACAAGAAACCTATTCGGTCTATACCTCAGCCGCACCACCGCCATAGTACCGCCGTGATGGGAAGAGGAAAATTGAGCATGAAACTGATCAG
TAATGAGAAATCTCGAAAGACGACGTTTTATAAGCGGAAAGCAAGTTTGTTGCGAAAAGCTTATGAGCTGTCTACACTGTGCGATGTTCGTGCTTGTGTCTTTGTCTATG
GCCCTAACCAAAATGACCAATCTACCCTCCAACTTCACACGTGGCCCTCGTGTCGGGAACACGTCAACGAAATGATCGCTTCTTACAAGGCTAACTGTCTCCATAAACGT
GCTCGCAAGGCTTTCGGTCTCTTCGACTTCTTCTCCGAGAGGAAGAAGAAGATTGAAGCTGACGTGTCCAAGCTTCGCAAGGATGTTGCTGAAGCCAGCTTTCCCTCCAA
CAAACCCCCCTCTCACGATTTCCCTCATCCTCTCCCTCTCACTCACAATCTTCATCTTCCTCTCCCTATCCCTCTCACAGCAGTTCGCGCAGAACATTTCTCCAGCAGTT
TCGTCGCACAGCAGTGGTTCGCCGCCGCTGTCGCACAGCAGCAGTCCACCGCCGACGTCGCACAGCAGCAGTCCGCTGCCGCCGTCGCACAGCAGAAGTTCGCCGCCGCC
GTCGCACAGCAGAAGTCCGCCGGCCCCGTCGCACAGCAGCAGTTCGCCGCCGTCGTCGCACAGCAGATCCTCCGCCGCCGCAGTCGCACAGTAGATCCTCTGCCATCGCC
GCCGCACAGCAGCTTCCGAAAGTCGCTGTTGTTTTCAGTAAGGTCTTTCAAGAGTGTGAAAAAGAAGAAGCTTACTTGGAAATCAATCAAATTGGTCTTTGAAATATTCG
AGAAAGATGTTATGTGGAAAGAATACGCTCACTTAGACGAGTTGTTATACTTCTTAGAGGTTGGACAAGTTTATTAG
Protein sequenceShow/hide protein sequence
MEAFVSDKKPIRSIPQPHHRHSTAVMGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRACVFVYGPNQNDQSTLQLHTWPSCREHVNEMIASYKANCLHKR
ARKAFGLFDFFSERKKKIEADVSKLRKDVAEASFPSNKPPSHDFPHPLPLTHNLHLPLPIPLTAVRAEHFSSSFVAQQWFAAAVAQQQSTADVAQQQSAAAVAQQKFAAA
VAQQKSAGPVAQQQFAAVVAQQILRRRSRTVDPLPSPPHSSFRKSLLFSVRSFKSVKKKKLTWKSIKLVFEIFEKDVMWKEYAHLDELLYFLEVGQVY