CuGenDBv2

Gene ID	Lsi10G007620
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Eukaryotic translation initiation factor 6
Genome location	chr10:10452561..10458562
RNA-Seq Expression	Lsi10G007620
Synteny	Lsi10G007620
Gene Ontology terms	GO:0000054 - ribosomal subunit export from nucleus (biological process) GO:0000460 - maturation of 5.8S rRNA (biological process) GO:0000470 - maturation of LSU-rRNA (biological process) GO:0006413 - translational initiation (biological process) GO:0042256 - mature ribosome assembly (biological process) GO:1902626 - assembly of large subunit precursor of preribosome (biological process) GO:0005730 - nucleolus (cellular component) GO:0005829 - cytosol (cellular component) GO:0030687 - preribosome, large subunit precursor (cellular component) GO:0003743 - translation initiation factor activity (molecular function) GO:0043022 - ribosome binding (molecular function) GO:0043023 - ribosomal large subunit binding (molecular function)
InterPro domains	IPR002769 - Translation initiation factor IF6

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022147757.1 eukaryotic translation initiation factor 6-2 [Momordica charantia]

1.3e-114

90.87

Show/hide

Query:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        LMFENSCEIGVFSKLTNAYCLVAIGGSENFYS FE+ELGGVIPVVK SIDGTRIIGRLCA               ELQHLRNSLPDQVVVQRIQERLSAL
Subjt:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYC+FTNRGGLVHPHTS+EDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDW A
Subjt:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV
        FCGSDTTATELSVIESVFKLREAQPSSIV+EMRKSLIDSYV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV

XP_022931983.1 eukaryotic translation initiation factor 6-2-like [Cucurbita moschata]

6.5e-114

90.04

Show/hide

Query:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        LMFENSCEIGVFSKLTNAYCLVAIGGSENFYS FE+ELGGVIPVVKTSIDGTRIIGRLCA               ELQHLRNSLPDQVVVQRIQERLSAL
Subjt:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GNTI+CNDHVAL HTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYC+FTNRGGLVHPHTS+EDLDELSTLLQVPLVAGTVNRGSEVIAAGL ANDWTA
Subjt:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV
        FCGSDTTATELSVIESVFKLRE QPSSIV+EMRKSLIDSYV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV

XP_022973842.1 eukaryotic translation initiation factor 6-2 [Cucurbita maxima]

2.2e-114

90.46

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Query:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        LMFENSCEIGVFSKLTNAYCLVAIGGSENFYS FE+ELGGVIPVVKTSIDGTRIIGRLCA               ELQHLRNSLPDQVVVQRIQERLSAL
Subjt:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GNTI+CNDHVAL HTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYC+FTNRGGLVHPHTS+EDLDELSTLLQVPLVAGTVNRGSEVIAAGL ANDWTA
Subjt:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV
        FCGSDTTATELSVIESVFKLREAQPSSIV+EMRKSLIDSYV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV

XP_038880643.1 eukaryotic translation initiation factor 6-2-like [Benincasa hispida]

4.5e-115

91.7

Show/hide

Query:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        LMFENSCEIGVFSKLTNAYCLVAIGGSENFYS FETELGGVIPVVK SIDGTRIIGRLCA               ELQHLRNSLPDQVVVQRIQERLSAL
Subjt:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GNTIACNDHVAL HTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYC+FTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDW A
Subjt:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV
        FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV

XP_038900322.1 eukaryotic translation initiation factor 6-2 [Benincasa hispida]

2.4e-116

92.53

Show/hide

Query:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVK SIDGTRIIGRLCA               ELQHLRNSLPDQVVVQRIQERLSAL
Subjt:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GNTIACNDHVAL HTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYC+FTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
Subjt:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV
        FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D392 Eukaryotic translation initiation factor 6

6.3e-115

90.87

Show/hide

Query:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        LMFENSCEIGVFSKLTNAYCLVAIGGSENFYS FE+ELGGVIPVVK SIDGTRIIGRLCA               ELQHLRNSLPDQVVVQRIQERLSAL
Subjt:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYC+FTNRGGLVHPHTS+EDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDW A
Subjt:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV
        FCGSDTTATELSVIESVFKLREAQPSSIV+EMRKSLIDSYV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV

A0A6J1F0A8 Eukaryotic translation initiation factor 6

3.1e-114

90.04

Show/hide

Query:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        LMFENSCEIGVFSKLTNAYCLVAIGGSENFYS FE+ELGGVIPVVKTSIDGTRIIGRLCA               ELQHLRNSLPDQVVVQRIQERLSAL
Subjt:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GNTI+CNDHVAL HTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYC+FTNRGGLVHPHTS+EDLDELSTLLQVPLVAGTVNRGSEVIAAGL ANDWTA
Subjt:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV
        FCGSDTTATELSVIESVFKLRE QPSSIV+EMRKSLIDSYV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV

A0A6J1G8F7 Eukaryotic translation initiation factor 6

9.2e-114

89.63

Show/hide

Query:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        LMFENSCEIGVFSKLTNAYCLVAIGGSENFYS+FE EL GVIPVVKTSIDGTRIIGRLCA               ELQHLRNSLPDQVVVQRIQERLSAL
Subjt:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GNTIACNDHVAL HTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYC+FTNRGGLVHPHTS+EDLDELSTLLQVPLVAGTVNRGSEVIAAGL  NDWTA
Subjt:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV
        FCGSDTTATELSV+ESVFKLREAQPSSIV+EMRKSLIDSYV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV

A0A6J1I8L9 Eukaryotic translation initiation factor 6

1.1e-114

90.46

Show/hide

Query:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        LMFENSCEIGVFSKLTNAYCLVAIGGSENFYS FE+ELGGVIPVVKTSIDGTRIIGRLCA               ELQHLRNSLPDQVVVQRIQERLSAL
Subjt:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GNTI+CNDHVAL HTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYC+FTNRGGLVHPHTS+EDLDELSTLLQVPLVAGTVNRGSEVIAAGL ANDWTA
Subjt:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV
        FCGSDTTATELSVIESVFKLREAQPSSIV+EMRKSLIDSYV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV

A0A6J1L2F0 Eukaryotic translation initiation factor 6

9.2e-114

89.63

Show/hide

Query:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        LMFENSCEIGVFSKLTNAYCLVAIGGSENFYS+FE EL GVIPVVKTSIDGTRIIGRLCA               ELQHLRNSLPDQVVVQRIQERLSAL
Subjt:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GNTIACNDHVAL HTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYC+FTNRGGLVHPHTS+EDLDELSTLLQVPLVAGTVNRGSEVIAAGL  NDWTA
Subjt:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV
        FCGSDTTATELSV+ESVFKLREAQPSSIV+EMRKSLIDSYV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV

SwissProt top hits

e value

%identity

Alignment

O55135 Eukaryotic translation initiation factor 6

5.2e-90

70.89

Show/hide

Query:  FENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGN
        FEN+CE+G F+KLTNAYCLVAIGGSENFYS FE EL   IPVV  SI G RIIGR+C                ELQH+RNSLPD V ++R++ERLSALGN
Subjt:  FENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGN

Query:  TIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFC
           CND+VAL H DLDRETEE++ADVL VEVFRQTVA  VLVGSYC F+N+GGLVHP TS+ED DELS+LLQVPLVAGTVNRGSEVIAAG+  NDW AFC
Subjt:  TIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFC

Query:  GSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDS
        G DTT+TELSV+ESVFKL EA+PS+I   MR SLIDS
Subjt:  GSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDS

P56537 Eukaryotic translation initiation factor 6

5.2e-90

71.31

Show/hide

Query:  FENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGN
        FEN+CEIG F+KLTN YCLVAIGGSENFYS FE EL   IPVV  SI G RIIGR+C                ELQH+RNSLPD V ++R++ERLSALGN
Subjt:  FENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGN

Query:  TIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFC
           CND+VAL H DLDRETEE++ADVL VEVFRQTVA  VLVGSYC F+N+GGLVHP TS+ED DELS+LLQVPLVAGTVNRGSEVIAAG+  NDW AFC
Subjt:  TIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFC

Query:  GSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDS
        G DTT+TELSV+ESVFKL EAQPS+I   MR SLIDS
Subjt:  GSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDS

Q3KRD8 Eukaryotic translation initiation factor 6

1.5e-89

70.46

Show/hide

Query:  FENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGN
        FEN+CE+G F+KLTN YCLVAIGGSENFYS FE EL   IPVV  SI G RIIGR+C                ELQH+RNSLPD V ++R++ERLSALGN
Subjt:  FENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGN

Query:  TIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFC
           CND+VAL H DLDRETEE++ADVL VEVFRQTVA  VLVGSYC F+N+GGLVHP TS+ED DELS+LLQVPLVAGTVNRGSEVIAAG+  NDW AFC
Subjt:  TIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFC

Query:  GSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDS
        G DTT+TELSV+ESVFKL EA+PS+I   MR SLIDS
Subjt:  GSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDS

Q9M060 Eukaryotic translation initiation factor 6-2

3.2e-108

81.74

Show/hide

Query:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        L FEN+CE+GVFSKLTNAYCLVAIGGSENFYS FE+EL  VIP+VKTSI GTRIIGRLCA               ELQHLRNSLPDQVVVQRI ERLSAL
Subjt:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GN IACND+VALAHTDLD+ETEE+IADVLGVEVFRQT+AGN+LVGSYC  +N+GG+VHPHTSVEDL+ELSTLLQVPLVAGTVNRGSEVIAAG+T NDWT+
Subjt:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV
        FCGSDTTATELSVI+S+FKLREAQPSSIV+EMRKSLID+YV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV

Q9TU47 Eukaryotic translation initiation factor 6

1.8e-90

71.31

Show/hide

Query:  FENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGN
        FEN+CEIG F+KLTN+YCLVAIGGSENFYS FE EL G IPVV  SI G RIIGR+C                ELQH+RN LPD V ++R++ERLSALGN
Subjt:  FENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGN

Query:  TIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFC
           CND+VAL H DLDRETEE++ADVL VEVFRQTVA  VLVGSYC F+N+GGLVHP TS+ED DELS+LLQVPLVAGTVNRGSEVIAAG+  NDW AFC
Subjt:  TIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFC

Query:  GSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDS
        G DTT+TELSV+ESVFKL EAQPS+I   MR SLIDS
Subjt:  GSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDS

Arabidopsis top hits

e value

%identity

Alignment

AT2G39820.1 Translation initiation factor IF6

7.0e-82

63.45

Show/hide

Query:  NSCEIGVFSKLTNAYCLV-AIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGNT
        N+CEIGVFSKLTNAYCLV A   S NF++ +E++L GVIP+V TSI G+  IG LC                ELQHLR+SLPD+VVVQRI+E + ALGN 
Subjt:  NSCEIGVFSKLTNAYCLV-AIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSALGNT

Query:  IACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCG
        IACND+VAL H  L+++TEE+I+DVLGVEV+RQT+A N LVGSYC+ +N GG+VH +T+VE++ EL+ L+QVPLVAGTVNRGS+VI+AGLT NDWTAFCG
Subjt:  IACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCG

Query:  SDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV
        SDTTA ELSV+ ++FKL ++QP  +  EMRKSLID+YV
Subjt:  SDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV

AT3G55620.1 Translation initiation factor IF6

2.3e-109

81.74

Show/hide

Query:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL
        L FEN+CE+GVFSKLTNAYCLVAIGGSENFYS FE+EL  VIP+VKTSI GTRIIGRLCA               ELQHLRNSLPDQVVVQRI ERLSAL
Subjt:  LMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCA---------------ELQHLRNSLPDQVVVQRIQERLSAL

Query:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA
        GN IACND+VALAHTDLD+ETEE+IADVLGVEVFRQT+AGN+LVGSYC  +N+GG+VHPHTSVEDL+ELSTLLQVPLVAGTVNRGSEVIAAG+T NDWT+
Subjt:  GNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTA

Query:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV
        FCGSDTTATELSVI+S+FKLREAQPSSIV+EMRKSLID+YV
Subjt:  FCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV

Sequences

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CDS sequence

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ATGGGGCTTATGTTTGAGAACTCATGTGAAATTGGGGTTTTCTCCAAGCTCACCAATGCTTATTGCTTGGTTGCAATTGGTGGCTCTGAGAATTTCTACAGTACC
TTTGAAACTGAATTAGGTGGTGTTATTCCGGTTGTTAAAACATCTATTGATGGCACTCGCATTATTGGCCGTCTATGTGCTGAACTTCAGCACTTGAGAAACAGC
CTACCTGACCAAGTTGTTGTTCAACGTATACAAGAGAGATTGTCTGCTCTGGGGAATACAATTGCCTGTAATGATCATGTTGCTCTCGCACATACTGATCTTGAT
CGGGAAACTGAAGAGCTCATTGCTGATGTTCTTGGAGTGGAGGTCTTTAGGCAGACAGTAGCAGGCAACGTCCTCGTGGGAAGCTACTGTAACTTCACGAATAGG
GGTGGCTTGGTTCATCCACATACGTCTGTTGAAGATTTGGACGAGCTATCAACCCTTCTTCAGGTTCCTTTAGTTGCTGGAACCGTAAATCGTGGAAGTGAAGTG
ATTGCTGCTGGATTGACAGCAAATGACTGGACTGCATTTTGTGGTTCAGACACCACTGCCACCGAGTTATCGGTCATTGAGAGCGTTTTCAAATTGAGGGAGGCT
CAACCAAGTTCCATTGTTGAAGAAATGAGGAAGTCACTAATAGACAGTTACGTGTGA

mRNA sequence

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Protein sequence

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MGLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCAELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLD
RETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREA
QPSSIVEEMRKSLIDSYV

Lsi10G007620 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome