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Lsi10G007670 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G007670
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCCR4-NOT transcription complex subunit 11
Genome locationchr10:10491808..10495143
RNA-Seq ExpressionLsi10G007670
SyntenyLsi10G007670
Gene Ontology termsGO:0031047 - gene silencing by RNA (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0030014 - CCR4-NOT complex (cellular component)
InterPro domainsIPR019312 - CCR4-NOT transcription complex subunit 11


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008460852.1 PREDICTED: CCR4-NOT transcription complex subunit 11 isoform X1 [Cucumis melo]5.8e-4881.6Show/hide
Query:  MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISF
        MFKISNKEVK GSMKMSLTADESRTLYSLLAGGDHRPF+DI+ADFTSKIPRTRHFVACYSL+VLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISF
Subjt:  MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISF

Query:  IVNCGSRFKENTVDEVTLFSLASIE
        IVN  S  +    +   +F L + +
Subjt:  IVNCGSRFKENTVDEVTLFSLASIE
XP_011649439.1 CCR4-NOT transcription complex subunit 11 [Cucumis sativus]2.4e-4680Show/hide
Query:  MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISF
        MFKISNKEVK GSMKMSLTADESRTL SLLAGGDHRPFTDI+ADFTSKIPRTRHFVACYSL+VL EPK LLRATQRLVGFSILHQTYSSQKSSFNPFISF
Subjt:  MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISF

Query:  IVNCGSRFKENTVDEVTLFSLASIE
        IVN  S  +    +   +F L + +
Subjt:  IVNCGSRFKENTVDEVTLFSLASIE
XP_038901185.1 CCR4-NOT transcription complex subunit 11 isoform X1 [Benincasa hispida]1.3e-4781.6Show/hide
Query:  MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISF
        MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHR FTDI+ADFTSKIPRTR FVACYSLV+LLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISF
Subjt:  MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISF

Query:  IVNCGSRFKENTVDEVTLFSLASIE
        IVN  S  +    +   +F L + +
Subjt:  IVNCGSRFKENTVDEVTLFSLASIE
XP_038901186.1 CCR4-NOT transcription complex subunit 11 isoform X2 [Benincasa hispida]1.3e-4781.6Show/hide
Query:  MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISF
        MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHR FTDI+ADFTSKIPRTR FVACYSLV+LLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISF
Subjt:  MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISF

Query:  IVNCGSRFKENTVDEVTLFSLASIE
        IVN  S  +    +   +F L + +
Subjt:  IVNCGSRFKENTVDEVTLFSLASIE
XP_038901187.1 CCR4-NOT transcription complex subunit 11 isoform X3 [Benincasa hispida]1.3e-4781.6Show/hide
Query:  MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISF
        MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHR FTDI+ADFTSKIPRTR FVACYSLV+LLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISF
Subjt:  MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISF

Query:  IVNCGSRFKENTVDEVTLFSLASIE
        IVN  S  +    +   +F L + +
Subjt:  IVNCGSRFKENTVDEVTLFSLASIE
TrEMBL top hitse value%identityAlignment
A0A0A0LK95 CCR4-NOT transcription complex subunit 111.2e-4680Show/hide
Query:  MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISF
        MFKISNKEVK GSMKMSLTADESRTL SLLAGGDHRPFTDI+ADFTSKIPRTRHFVACYSL+VL EPK LLRATQRLVGFSILHQTYSSQKSSFNPFISF
Subjt:  MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISF

Query:  IVNCGSRFKENTVDEVTLFSLASIE
        IVN  S  +    +   +F L + +
Subjt:  IVNCGSRFKENTVDEVTLFSLASIE
A0A1S3CDE6 CCR4-NOT transcription complex subunit 112.8e-4881.6Show/hide
Query:  MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISF
        MFKISNKEVK GSMKMSLTADESRTLYSLLAGGDHRPF+DI+ADFTSKIPRTRHFVACYSL+VLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISF
Subjt:  MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISF

Query:  IVNCGSRFKENTVDEVTLFSLASIE
        IVN  S  +    +   +F L + +
Subjt:  IVNCGSRFKENTVDEVTLFSLASIE
A0A5D3BST3 CCR4-NOT transcription complex subunit 118.8e-4280.36Show/hide
Query:  MKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISFIVNCGSRFKENTV
        MKMSLTADESRTLYSLLAGGDHRPF+DI+ADFTSKIPRTRHFVACYSL+VLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISFIVN  S  +    
Subjt:  MKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISFIVNCGSRFKENTV

Query:  DEVTLFSLASIE
        +   +F L + +
Subjt:  DEVTLFSLASIE
A0A6J1DVV5 CCR4-NOT transcription complex subunit 114.3e-4175.21Show/hide
Query:  MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISF
        MFK S KEVKR SMKMSLT DESRTLYS LAGGD RPF DIIADFT+KIPR RHFVACYSLV+LLEPKKLL +TQRLVGF+ILHQ YSSQKSS NPFISF
Subjt:  MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISF

Query:  IVNCGSRFKENTVDEVTLFSL
        IVN  S  +    +   +F L
Subjt:  IVNCGSRFKENTVDEVTLFSL
A0A6J1L478 CCR4-NOT transcription complex subunit 113.3e-4174.38Show/hide
Query:  MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISF
        MFK++N E K GSMKM+LT DESRTLYSLLAGGD RPF DIIADFTSKIPRTR F+ACYSL +LLEPKKLL ATQRLVGFSILHQTYSSQKSS NPFISF
Subjt:  MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISF

Query:  IVNCGSRFKENTVDEVTLFSL
        IV+  S  +    +   +F L
Subjt:  IVNCGSRFKENTVDEVTLFSL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G18420.1 unknown protein1.3e-1339.56Show/hide
Query:  SMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISFIVN
        S  M +  +ES  + SLL   D RP  D++++F SK    R+   C SL ++L+ +++ + T+RL+ F I++Q YSSQK SFNPF+S +++
Subjt:  SMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISFIVN
AT5G18420.2 unknown protein1.3e-1339.56Show/hide
Query:  SMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISFIVN
        S  M +  +ES  + SLL   D RP  D++++F SK    R+   C SL ++L+ +++ + T+RL+ F I++Q YSSQK SFNPF+S +++
Subjt:  SMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISFIVN
AT5G18420.3 unknown protein7.1e-1239.56Show/hide
Query:  SMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISFIVN
        S  M +  +ES  + SLL   D RP  D++++F SK    R+   C SL ++L+   + + T+RL+ F I++Q YSSQK SFNPF+S +++
Subjt:  SMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISFIVN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCAAAATCTCGAACAAGGAAGTCAAGCGGGGAAGCATGAAGATGAGCCTGACGGCAGATGAATCCCGAACGCTCTACTCTTTGCTAGCAGGAGGAGATCACCGCCC
ATTTACAGATATCATCGCCGATTTTACCTCCAAGATCCCTCGCACTCGTCACTTTGTTGCCTGTTATTCACTCGTTGTTCTGTTAGAGCCCAAGAAGTTGCTCCGTGCCA
CACAACGTTTAGTGGGATTTTCCATTCTTCACCAGACATATTCCTCGCAGAAATCATCTTTTAATCCGTTTATATCTTTTATTGTAAATTGCGGCTCACGCTTTAAGGAA
AATACTGTGGACGAGGTTACTCTTTTTTCTTTGGCCTCCATTGAG
mRNA sequenceShow/hide mRNA sequence
GATTAAAGTCGGACGTCTAGTTGAAAACGAAAAGAAAGCAAGTTTGTATATATAAGTCGAAGATTTACTAATTTTGTGTAGAGAGTTCTTTTTGTTCTACACCTGCCATT
GCATTGATGTTCAAAATCTCGAACAAGGAAGTCAAGCGGGGAAGCATGAAGATGAGCCTGACGGCAGATGAATCCCGAACGCTCTACTCTTTGCTAGCAGGAGGAGATCA
CCGCCCATTTACAGATATCATCGCCGATTTTACCTCCAAGATCCCTCGCACTCGTCACTTTGTTGCCTGTTATTCACTCGTTGTTCTGTTAGAGCCCAAGAAGTTGCTCC
GTGCCACACAACGTTTAGTGGGATTTTCCATTCTTCACCAGACATATTCCTCGCAGAAATCATCTTTTAATCCGTTTATATCTTTTATTGTAAATTGCGGCTCACGCTTT
AAGGAAAATACTGTGGACGAGGTTACTCTTTTTTCTTTGGCCTCCATTGAG
Protein sequenceShow/hide protein sequence
MFKISNKEVKRGSMKMSLTADESRTLYSLLAGGDHRPFTDIIADFTSKIPRTRHFVACYSLVVLLEPKKLLRATQRLVGFSILHQTYSSQKSSFNPFISFIVNCGSRFKE
NTVDEVTLFSLASIE