; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G007740 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G007740
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionzinc finger CCCH domain-containing protein 13-like isoform X2
Genome locationchr10:10585652..10588401
RNA-Seq ExpressionLsi10G007740
SyntenyLsi10G007740
Gene Ontology termsGO:0016575 - histone deacetylation (biological process)
GO:0016853 - isomerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063090.1 peptidyl-prolyl cis-trans isomerase G isoform X2 [Cucumis melo var. makuwa]1.9e-7796.64Show/hide
Query:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHEAEAEKSQNHFV
        MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHE EAEKSQNHFV
Subjt:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHEAEAEKSQNHFV

Query:  HCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE
        HCPNGER DNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVE L++
Subjt:  HCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE

XP_008460840.1 PREDICTED: uncharacterized protein LOC103499596 isoform X1 [Cucumis melo]1.9e-7796.64Show/hide
Query:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHEAEAEKSQNHFV
        MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHE EAEKSQNHFV
Subjt:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHEAEAEKSQNHFV

Query:  HCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE
        HCPNGER DNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVE L++
Subjt:  HCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE

XP_008460844.1 PREDICTED: peptidyl-prolyl cis-trans isomerase G isoform X2 [Cucumis melo]1.9e-7796.64Show/hide
Query:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHEAEAEKSQNHFV
        MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHE EAEKSQNHFV
Subjt:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHEAEAEKSQNHFV

Query:  HCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE
        HCPNGER DNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVE L++
Subjt:  HCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE

XP_011649442.1 zinc finger CCCH domain-containing protein 13 [Cucumis sativus]2.7e-7695.3Show/hide
Query:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHEAEAEKSQNHFV
        MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHE EAEKSQNHF+
Subjt:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHEAEAEKSQNHFV

Query:  HCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE
        +CPNGER DNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVE L++
Subjt:  HCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE

XP_038900584.1 zinc finger CCCH domain-containing protein 13 [Benincasa hispida]5.4e-7795.97Show/hide
Query:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHEAEAEKSQNHFV
        MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHEAEA+KSQNHFV
Subjt:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHEAEAEKSQNHFV

Query:  HCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE
        HCPNGER DNDNTLIDVFRW RCKKPLPQKVMRSIGIPLPSEHVE L++
Subjt:  HCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE

TrEMBL top hitse value%identityAlignment
A0A0A0LJZ2 Uncharacterized protein1.3e-7695.3Show/hide
Query:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHEAEAEKSQNHFV
        MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHE EAEKSQNHF+
Subjt:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHEAEAEKSQNHFV

Query:  HCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE
        +CPNGER DNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVE L++
Subjt:  HCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE

A0A1S3CCW4 peptidyl-prolyl cis-trans isomerase G isoform X29.0e-7896.64Show/hide
Query:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHEAEAEKSQNHFV
        MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHE EAEKSQNHFV
Subjt:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHEAEAEKSQNHFV

Query:  HCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE
        HCPNGER DNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVE L++
Subjt:  HCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE

A0A1S3CDT5 uncharacterized protein LOC103499596 isoform X19.0e-7896.64Show/hide
Query:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHEAEAEKSQNHFV
        MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHE EAEKSQNHFV
Subjt:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHEAEAEKSQNHFV

Query:  HCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE
        HCPNGER DNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVE L++
Subjt:  HCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE

A0A5A7V768 Peptidyl-prolyl cis-trans isomerase G isoform X29.0e-7896.64Show/hide
Query:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHEAEAEKSQNHFV
        MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHE EAEKSQNHFV
Subjt:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHEAEAEKSQNHFV

Query:  HCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE
        HCPNGER DNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVE L++
Subjt:  HCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE

A0A6J1G6W1 uncharacterized protein LOC1114514154.9e-7693.96Show/hide
Query:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHEAEAEKSQNHFV
        MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETH+CRYELCFSGEKMVKTI +SQGHEA+AEKSQNHFV
Subjt:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHEAEAEKSQNHFV

Query:  HCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE
        HCPNGER DNDNTLIDVFRWSRCK PLPQKVMRSIGIPLPSEHVE L++
Subjt:  HCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G08450.1 CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink).3.3e-6477.07Show/hide
Query:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQ---GHEA-----EA
        MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPL+TSARLKKGEVLYLETHSCRYELCF+GEK +K I +SQ    HEA       
Subjt:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQ---GHEA-----EA

Query:  EKSQNHFVHCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE
         KSQNH     NG++ D+DN+LIDVFRWSRCKKPLPQK+MRSIG PLP++H+E L+E
Subjt:  EKSQNHFVHCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE

AT5G08450.2 CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).3.3e-6477.07Show/hide
Query:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQ---GHEA-----EA
        MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPL+TSARLKKGEVLYLETHSCRYELCF+GEK +K I +SQ    HEA       
Subjt:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQ---GHEA-----EA

Query:  EKSQNHFVHCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE
         KSQNH     NG++ D+DN+LIDVFRWSRCKKPLPQK+MRSIG PLP++H+E L+E
Subjt:  EKSQNHFVHCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE

AT5G08450.3 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink).3.3e-6477.07Show/hide
Query:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQ---GHEA-----EA
        MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPL+TSARLKKGEVLYLETHSCRYELCF+GEK +K I +SQ    HEA       
Subjt:  MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQ---GHEA-----EA

Query:  EKSQNHFVHCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE
         KSQNH     NG++ D+DN+LIDVFRWSRCKKPLPQK+MRSIG PLP++H+E L+E
Subjt:  EKSQNHFVHCPNGERIDNDNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACAAGGGCTGCAGCCTCTAATGCATTGCGTCAACAGAGGTTTGTAAGAGAAGTTACAATTCAGTACAACCTTTGCAATGAACCATGGATTAAATACAGCATAAG
TATTGTTGCGGACAAAGGTCTAAAGAAGCCCCTCTACACATCTGCGCGGTTGAAGAAGGGAGAAGTTTTGTATCTAGAAACACATTCGTGCAGGTATGAACTCTGCTTTT
CCGGGGAGAAGATGGTGAAAACCATTGCATCATCTCAAGGGCATGAAGCTGAAGCCGAGAAATCTCAGAATCACTTTGTTCACTGCCCAAATGGTGAAAGAATTGATAAC
GATAATACTTTGATTGATGTGTTTCGGTGGTCTCGCTGTAAGAAGCCACTGCCTCAGAAGGTTATGCGTTCTATTGGGATTCCACTGCCTTCTGAACACGTAGAGGCGCT
TCAAGAGATGGAAGTAGACTTTTCTTTCAGTGATGATTTCATTTATCATATTACGATCATTACTGGTTACATATTTAGATCATTTCATAGAAGAGATAAGATAAATTGGA
CAACATGGCTTTGCAAATCTCCATCTTTGTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTACAAGGGCTGCAGCCTCTAATGCATTGCGTCAACAGAGGTTTGTAAGAGAAGTTACAATTCAGTACAACCTTTGCAATGAACCATGGATTAAATACAGCATAAG
TATTGTTGCGGACAAAGGTCTAAAGAAGCCCCTCTACACATCTGCGCGGTTGAAGAAGGGAGAAGTTTTGTATCTAGAAACACATTCGTGCAGGTATGAACTCTGCTTTT
CCGGGGAGAAGATGGTGAAAACCATTGCATCATCTCAAGGGCATGAAGCTGAAGCCGAGAAATCTCAGAATCACTTTGTTCACTGCCCAAATGGTGAAAGAATTGATAAC
GATAATACTTTGATTGATGTGTTTCGGTGGTCTCGCTGTAAGAAGCCACTGCCTCAGAAGGTTATGCGTTCTATTGGGATTCCACTGCCTTCTGAACACGTAGAGGCGCT
TCAAGAGATGGAAGTAGACTTTTCTTTCAGTGATGATTTCATTTATCATATTACGATCATTACTGGTTACATATTTAGATCATTTCATAGAAGAGATAAGATAAATTGGA
CAACATGGCTTTGCAAATCTCCATCTTTGTTGTAA
Protein sequenceShow/hide protein sequence
MTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFSGEKMVKTIASSQGHEAEAEKSQNHFVHCPNGERIDN
DNTLIDVFRWSRCKKPLPQKVMRSIGIPLPSEHVEALQEMEVDFSFSDDFIYHITIITGYIFRSFHRRDKINWTTWLCKSPSLL