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Lsi10G007870 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G007870
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTrafficking protein particle complex subunit 2-like
Genome locationchr10:10693332..10697316
RNA-Seq ExpressionLsi10G007870
SyntenyLsi10G007870
Gene Ontology termsGO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process)
GO:0005737 - cytoplasm (cellular component)
InterPro domainsIPR006722 - Trafficking protein particle complex subunit 2
IPR011012 - Longin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2302278.1 hypothetical protein Bca52824_030929 [Brassica carinata]1.6e-4388.24Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYTILNPLYLPGSRITSSHFDTKVRALARK
        MA TACF+IV+RN+IPIYEAEVGSA KRED+AQLHQFILHA+LD+VQDLAWTTSAMFLK+VDRFNDLVVSVY +LNPLYLPGSRITS+HFDTKVRALARK
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYTILNPLYLPGSRITSSHFDTKVRALARK

Query:  YL
        YL
Subjt:  YL

KAG6604699.1 Trafficking protein particle complex subunit 2, partial [Cucurbita argyrosperma subsp. sororia]1.3e-4274.26Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY----------------------------
        MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY                            
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY----------------------------

Query:  ------TILNPLYLPGSRITSSHFDTKVRALARKYL
              TILNPLYLPGSRITSSHFDTKVRALARKYL
Subjt:  ------TILNPLYLPGSRITSSHFDTKVRALARKYL

XP_004147330.1 transport protein particle 20 kDa subunit [Cucumis sativus]4.6e-4374.81Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY----------------------------
        MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY                            
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY----------------------------

Query:  -----TILNPLYLPGSRITSSHFDTKVRALARKYL
             TILNPLYLPGSR+TSSHFDTKVRALARKYL
Subjt:  -----TILNPLYLPGSRITSSHFDTKVRALARKYL

XP_022947789.1 transport protein particle 20 kDa subunit isoform X2 [Cucurbita moschata]1.0e-4274.81Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY----------------------------
        MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY                            
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY----------------------------

Query:  -----TILNPLYLPGSRITSSHFDTKVRALARKYL
             TILNPLYLPGSRITSSHFDTKVRALARKYL
Subjt:  -----TILNPLYLPGSRITSSHFDTKVRALARKYL

XP_038900562.1 transport protein particle 20 kDa subunit [Benincasa hispida]3.5e-4375.56Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY----------------------------
        MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY                            
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY----------------------------

Query:  -----TILNPLYLPGSRITSSHFDTKVRALARKYL
             TILNPLYLPGSRITSSHFDTKVRALARKYL
Subjt:  -----TILNPLYLPGSRITSSHFDTKVRALARKYL

TrEMBL top hitse value%identityAlignment
A0A1S3CCU2 trafficking protein particle complex subunit 2 isoform X26.5e-4374.81Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY----------------------------
        MA TACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY                            
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY----------------------------

Query:  -----TILNPLYLPGSRITSSHFDTKVRALARKYL
             TILNPLYLPGSRITSSHFDTKVRALARKYL
Subjt:  -----TILNPLYLPGSRITSSHFDTKVRALARKYL

A0A1S4E319 trafficking protein particle complex subunit 2 isoform X18.4e-4374.26Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY----------------------------
        MA TACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY                            
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY----------------------------

Query:  ------TILNPLYLPGSRITSSHFDTKVRALARKYL
              TILNPLYLPGSRITSSHFDTKVRALARKYL
Subjt:  ------TILNPLYLPGSRITSSHFDTKVRALARKYL

A0A445C1A0 Uncharacterized protein1.4e-4290.2Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYTILNPLYLPGSRITSSHFDTKVRALARK
        MATTACFIIVSRN+IPIYEAEVG A KRED+AQLHQFILHA+LDIVQDLAWTTSAM+LK+VDRFNDLVVS  T+LNPLYLPGSRITSSHFDTKVRALARK
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYTILNPLYLPGSRITSSHFDTKVRALARK

Query:  YL
        YL
Subjt:  YL

A0A6J1G7X4 transport protein particle 20 kDa subunit isoform X24.9e-4374.81Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY----------------------------
        MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY                            
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY----------------------------

Query:  -----TILNPLYLPGSRITSSHFDTKVRALARKYL
             TILNPLYLPGSRITSSHFDTKVRALARKYL
Subjt:  -----TILNPLYLPGSRITSSHFDTKVRALARKYL

A0A6J1I1U1 transport protein particle 20 kDa subunit isoform X24.9e-4374.81Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY----------------------------
        MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY                            
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY----------------------------

Query:  -----TILNPLYLPGSRITSSHFDTKVRALARKYL
             TILNPLYLPGSRITSSHFDTKVRALARKYL
Subjt:  -----TILNPLYLPGSRITSSHFDTKVRALARKYL

SwissProt top hitse value%identityAlignment
E2QV03 Trafficking protein particle complex subunit 23.3e-1231.88Show/hide
Query:  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYT------------------------
        M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS +                         
Subjt:  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYT------------------------

Query:  ---------ILNPLYLPGSRITSSHFDTKVRALARKYL
                  +NP Y P S I SS FD KV+ L +K+L
Subjt:  ---------ILNPLYLPGSRITSSHFDTKVRALARKYL

P0DI81 Trafficking protein particle complex subunit 23.3e-1231.88Show/hide
Query:  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYTI-----------------------
        M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS +                         
Subjt:  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYTI-----------------------

Query:  ----------LNPLYLPGSRITSSHFDTKVRALARKYL
                  +NP Y P S I SS FD KV+ L +K+L
Subjt:  ----------LNPLYLPGSRITSSHFDTKVRALARKYL

P0DI82 Trafficking protein particle complex subunit 2B3.3e-1231.88Show/hide
Query:  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYTI-----------------------
        M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS +                         
Subjt:  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYTI-----------------------

Query:  ----------LNPLYLPGSRITSSHFDTKVRALARKYL
                  +NP Y P S I SS FD KV+ L +K+L
Subjt:  ----------LNPLYLPGSRITSSHFDTKVRALARKYL

Q3T0F2 Trafficking protein particle complex subunit 23.3e-1231.88Show/hide
Query:  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYT------------------------
        M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS +                         
Subjt:  MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYT------------------------

Query:  ---------ILNPLYLPGSRITSSHFDTKVRALARKYL
                  +NP Y P S I SS FD KV+ L +K+L
Subjt:  ---------ILNPLYLPGSRITSSHFDTKVRALARKYL

Q9USZ5 Transport protein particle 20 kDa subunit7.9e-1431.85Show/hide
Query:  TACFIIVSRNNIPIYEAEVGSAVKRED---SAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY----------------------------
        TA   I+   + P+YE E+G   ++ D   ++ L+QFI+H+SLDIV  L WT++A ++K +D+F+++ +S Y                            
Subjt:  TACFIIVSRNNIPIYEAEVGSAVKRED---SAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY----------------------------

Query:  -----TILNPLYLPGSRITSSHFDTKVRALARKYL
             T+++P Y P   I S  FD KVR++AR+YL
Subjt:  -----TILNPLYLPGSRITSSHFDTKVRALARKYL

Arabidopsis top hitse value%identityAlignment
AT1G80500.1 SNARE-like superfamily protein2.5e-3188.89Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY
        MA TACFIIV RN+IPIYEAEVGSA KRED+AQLHQFILHA+LD+VQDLAWTTSAMFLK+VDRFNDLVVSVY
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVY

AT1G80500.1 SNARE-like superfamily protein5.5e-1096.55Show/hide
Query:  ILNPLYLPGSRITSSHFDTKVRALARKYL
        +LNPLYLPGSRITSSHFDTKVRALARKYL
Subjt:  ILNPLYLPGSRITSSHFDTKVRALARKYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAACAATATCCCTATTTATGAAGCTGAAGTCGGATCTGCTGTTAAAAGAGAGGATTCCGCTCAGCTGCATCAGTT
TATATTGCATGCGTCCCTTGACATTGTTCAAGACTTGGCATGGACTACTAGTGCCATGTTCTTGAAAGCAGTCGATAGGTTCAATGATTTGGTGGTGTCTGTCTATACTA
TACTCAATCCCCTCTACTTGCCTGGATCCCGCATCACATCTTCACATTTCGACACAAAAGTTCGTGCACTCGCAAGGAAGTATCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAACAATATCCCTATTTATGAAGCTGAAGTCGGATCTGCTGTTAAAAGAGAGGATTCCGCTCAGCTGCATCAGTT
TATATTGCATGCGTCCCTTGACATTGTTCAAGACTTGGCATGGACTACTAGTGCCATGTTCTTGAAAGCAGTCGATAGGTTCAATGATTTGGTGGTGTCTGTCTATACTA
TACTCAATCCCCTCTACTTGCCTGGATCCCGCATCACATCTTCACATTTCGACACAAAAGTTCGTGCACTCGCAAGGAAGTATCTCTAG
Protein sequenceShow/hide protein sequence
MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYTILNPLYLPGSRITSSHFDTKVRALARKYL