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Lsi10G007910 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G007910
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCyclin family protein
Genome locationchr10:10721270..10733261
RNA-Seq ExpressionLsi10G007910
SyntenyLsi10G007910
Gene Ontology termsGO:0007049 - cell cycle (biological process)
GO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0050790 - regulation of catalytic activity (biological process)
GO:0051301 - cell division (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016592 - mediator complex (cellular component)
GO:0016538 - cyclin-dependent protein serine/threonine kinase regulator activity (molecular function)
InterPro domainsIPR006671 - Cyclin, N-terminal
IPR013763 - Cyclin-like
IPR036915 - Cyclin-like superfamily
IPR043198 - Cyclin/Cyclin-like subunit Ssn8


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147331.1 cyclin-C1-1 isoform X1 [Cucumis sativus]7.4e-3498.73Show/hide
Query:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
        +KSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
Subjt:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ

XP_031736853.1 cyclin-C1-1 isoform X2 [Cucumis sativus]7.4e-3498.73Show/hide
Query:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
        +KSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
Subjt:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ

XP_031736854.1 cyclin-C1-1 isoform X3 [Cucumis sativus]7.4e-3498.73Show/hide
Query:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
        +KSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
Subjt:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ

XP_038901502.1 cyclin-C1-1-like isoform X1 [Benincasa hispida]7.4e-3498.73Show/hide
Query:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
        +KSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
Subjt:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ

XP_038901504.1 cyclin-C1-1-like isoform X2 [Benincasa hispida]7.4e-3498.73Show/hide
Query:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
        +KSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
Subjt:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ

TrEMBL top hitse value%identityAlignment
A0A0A0LKA5 Uncharacterized protein3.6e-3498.73Show/hide
Query:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
        +KSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
Subjt:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ

A0A6J1DU31 cyclin-C1-1-like isoform X36.7e-3393.67Show/hide
Query:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
        +KSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKK+ SDEKY+YEIKHILEMEMKILEALDYYLV+FHPYRALSQ
Subjt:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ

A0A6J1DV87 cyclin-C1-1-like isoform X26.7e-3393.67Show/hide
Query:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
        +KSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKK+ SDEKY+YEIKHILEMEMKILEALDYYLV+FHPYRALSQ
Subjt:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ

A0A6J1DZ20 cyclin-C1-1-like isoform X16.7e-3393.67Show/hide
Query:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
        +KSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKK+ SDEKY+YEIKHILEMEMKILEALDYYLV+FHPYRALSQ
Subjt:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ

A0A6J1I4M9 cyclin-C1-1-like isoform X17.5e-3292.41Show/hide
Query:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
        +KSMTEYDPRLVTP CL+LASKAEESTVQARLLVFY+KKIQSD+K+KYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
Subjt:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ

SwissProt top hitse value%identityAlignment
P39947 Cyclin-C2.1e-0740Show/hide
Query:  SMTEYDPRLVTPTCLYLASKAEE-------STVQARLLVFYIK-KIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
        S+   DP L+ PTC++LASK EE       S + A   V   +    S +++ Y + HILE E  +LE +D  L+V+HPYR L Q
Subjt:  SMTEYDPRLVTPTCLYLASKAEE-------STVQARLLVFYIK-KIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ

P93411 Cyclin-C1-11.5e-2983.75Show/hide
Query:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKI-QSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
        +KSMTEYDPRLV PTCLYLASK EESTVQARLLVFYIKK+  SDEKY++EIK ILEMEMK+LEALDYYLVV+HPYR L Q
Subjt:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKI-QSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ

Q86KE7 Cyclin-C4.5e-1043.59Show/hide
Query:  MKKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRAL
        +K S  + +PRLV  TCLYL+SK EE   QA+     +K+I  D  + Y +  ILE E  +LE LD+ L+++HPY++L
Subjt:  MKKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRAL

Q9FJK6 Cyclin-C1-11.7e-2573.75Show/hide
Query:  MKKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
        ++KSM E++PRLV  TCLYLASKAEES VQAR LVFYIK++  DE  KYE+K IL MEMK+LEALDYYLVVFHPYR+LS+
Subjt:  MKKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ

Q9FJK7 Cyclin-C1-22.4e-2773.42Show/hide
Query:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
        +KS+TEY+PRLV PTCLYLA KAEES V A+LLVFY+KK+ +DEK++YEIK ILEMEMK+LEAL++YLVVFHPYR+L +
Subjt:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ

Arabidopsis top hitse value%identityAlignment
AT5G27620.1 cyclin H;13.8e-0434.67Show/hide
Query:  SMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRAL
        S+ ++ P+ +  TC+Y A K EE+ V A  +    K I  D +       IL+ EM +L++L++ L+V+ PYRA+
Subjt:  SMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRAL

AT5G48630.1 Cyclin family protein1.7e-2873.42Show/hide
Query:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
        +KS+TEY+PRLV PTCLYLA KAEES V A+LLVFY+KK+ +DEK++YEIK ILEMEMK+LEAL++YLVVFHPYR+L +
Subjt:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ

AT5G48630.2 Cyclin family protein1.7e-2873.42Show/hide
Query:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
        +KS+TEY+PRLV PTCLYLA KAEES V A+LLVFY+KK+ +DEK++YEIK ILEMEMK+LEAL++YLVVFHPYR+L +
Subjt:  KKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ

AT5G48640.1 Cyclin family protein1.2e-2673.75Show/hide
Query:  MKKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ
        ++KSM E++PRLV  TCLYLASKAEES VQAR LVFYIK++  DE  KYE+K IL MEMK+LEALDYYLVVFHPYR+LS+
Subjt:  MKKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAAGAGTATGACAGAATACGATCCGCGATTAGTGACTCCAACCTGCCTATATTTGGCTTCAAAAGCAGAAGAAAGCACAGTGCAAGCTAGACTTCTAGTGTTTTA
CATTAAAAAAATACAATCTGATGAAAAGTACAAGTATGAGATCAAACACATACTGGAAATGGAAATGAAAATTTTAGAAGCCCTTGACTATTATTTGGTGGTATTCCACC
CTTATCGTGCATTGTCTCAGTCCAAGATGCTTCGAATTGTATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAAAGAGTATGACAGAATACGATCCGCGATTAGTGACTCCAACCTGCCTATATTTGGCTTCAAAAGCAGAAGAAAGCACAGTGCAAGCTAGACTTCTAGTGTTTTA
CATTAAAAAAATACAATCTGATGAAAAGTACAAGTATGAGATCAAACACATACTGGAAATGGAAATGAAAATTTTAGAAGCCCTTGACTATTATTTGGTGGTATTCCACC
CTTATCGTGCATTGTCTCAGTCCAAGATGCTTCGAATTGTATAGGGGACTTGTGAACGACACCTACAAGATGGATCTAATTCTTGTACATCCACCCTATTTGATAGCTTT
GGCTTGCATATATATTGCTAGTGTACAAAGAGAGAAAGAGACAACTGCATGGTTTGAAGAACTTCATGTTGATATGAACGTGGTCAAGAATATCTCAATTGAGATACTGG
ACTTCTATGAAAACCACAGAATGATAACTGAGGAGAGAATAATTTCAGCTCTCGGCAAGCTACCAATGAAGTCGTCAATGTGAAGCAGATTCTAGTTCCTTAAAGATAAT
TTGTTATATCTATCTTGGCAAGCTAGGTTCTAATTTGTGAATACACTACTGTTCTTTCAGGAAATTTGTCCCAACTCTTTGCTTTACCAAGCTATGGCTCATAAGTCATA
GCCTATGAATAAAATATGGATGTCAATATGGAGACCGAGATATCGATTATACGGATATATCGATAAAATATTAATATCGACAAATATTTTTGTAAATAAAAAAGTTTATT
AAAATTAGTAATTGAGCTATTTTATTACC
Protein sequenceShow/hide protein sequence
MKKSMTEYDPRLVTPTCLYLASKAEESTVQARLLVFYIKKIQSDEKYKYEIKHILEMEMKILEALDYYLVVFHPYRALSQSKMLRIV