; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G007960 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G007960
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibosome-binding factor PSRP1
Genome locationchr10:10763286..10765643
RNA-Seq ExpressionLsi10G007960
SyntenyLsi10G007960
Gene Ontology termsGO:0045900 - negative regulation of translational elongation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0043022 - ribosome binding (molecular function)
GO:0043024 - ribosomal small subunit binding (molecular function)
InterPro domainsIPR003489 - Ribosome hibernation promoting factor/RaiA
IPR032528 - Sigma 54 modulation/S30EA ribosomal protein, C-terminal
IPR034694 - Ribosome hibernation promoting factor, long/plastid
IPR036567 - Ribosome hibernation promotion factor-like
IPR038416 - Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576623.1 Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.5e-13784.71Show/hide
Query:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSF----SLHFSALKVQALSSNTSAFFNSCK-SFRTIETASRNRHGSNSFSIRMSW
        +A LTSSMQ N+LS HSL+P      SSSSSSSSSSSST+S FP+SF    S + + LK  ALSS+ SAFFNSC   FRTI  A R RH + SFSIRMSW
Subjt:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSF----SLHFSALKVQALSSNTSAFFNSCK-SFRTIETASRNRHGSNSFSIRMSW

Query:  DGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKL
        DGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSI+QRKL
Subjt:  DGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKL

Query:  RKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGL
        RKIKEKDSD GRHMKGFDRSK+REPAPIVVEDEEEEV QEDGGE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGL
Subjt:  RKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGL

Query:  IIPKENGRAEKLESVTVEAAREPSLAE
        IIPKE+G AEK+E+VTV  ARE SLAE
Subjt:  IIPKENGRAEKLESVTVEAAREPSLAE

KAG7014676.1 Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]4.1e-13885.02Show/hide
Query:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSL----HFSALKVQALSSNTSAFFNSCK-SFRTIETASRNRHGSNSFSIRMSW
        +A LTSSMQ N+LS HSL+P      SSSSSSSSSSSST+S FP+SFSL    + + LK  ALSS+ SAFFNSC   FRTI  A R RH + SFSIRMSW
Subjt:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSL----HFSALKVQALSSNTSAFFNSCK-SFRTIETASRNRHGSNSFSIRMSW

Query:  DGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKL
        DGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSI+QRKL
Subjt:  DGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKL

Query:  RKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGL
        RKIKEKDSD GRHMKGFDRSK+R+PAPIVVEDEEEEV QEDGGE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGL
Subjt:  RKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGL

Query:  IIPKENGRAEKLESVTVEAAREPSLAE
        IIPKE+G AEK+E+VTVE ARE SLAE
Subjt:  IIPKENGRAEKLESVTVEAAREPSLAE

XP_004147328.1 ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus]4.2e-15190.06Show/hide
Query:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLS
        +ATLTSSMQAN+LSDHSLSPP              SSST+S+FP+SFSLHFSALKV ALSSN SAFFNSCK+F TIETASRNRH SNSFSIRM+WDGPLS
Subjt:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLS

Query:  SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE
        SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV+ASIDLVSSIIQRKLRKIKE
Subjt:  SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE

Query:  KDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE
        KDSDRGRH+KGFDRSKVREPAPIVVEDEEEEV QEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE
Subjt:  KDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE

Query:  NGRAEKLESVTVEAAREPSLAE
        NG AEKLE VT+EA REPSLAE
Subjt:  NGRAEKLESVTVEAAREPSLAE

XP_008460813.1 PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo]3.4e-14889.44Show/hide
Query:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLS
        +ATLTSSMQAN+LSDHSL PP              SSST+S+FP+ FSLHFSALKV ALSSN SAFFNSCK+F TIETASRNRH SNSFSIRM+WDG LS
Subjt:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLS

Query:  SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE
        SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+ASIDLVSSIIQRKLRKIKE
Subjt:  SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE

Query:  KDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE
        KDSDRGRH+KGFDRSKVREPAPIVVEDEEEEV QEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE
Subjt:  KDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE

Query:  NGRAEKLESVTVEAAREPSLAE
        NG AEKLE VTVEAAREPSLAE
Subjt:  NGRAEKLESVTVEAAREPSLAE

XP_038900446.1 ribosome-binding factor PSRP1, chloroplastic [Benincasa hispida]3.5e-14588.58Show/hide
Query:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQAL--SSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGP
        +A LTSSM  ++L DHSL           SSSSSSSSSTISFFP+SFSLHFSALKV AL  SS  SAFFNSCKSFRT ETASRNRH SNSF++RMSWDGP
Subjt:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQAL--SSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGP

Query:  LSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKI
        LSSVKLIVQ KNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKI
Subjt:  LSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKI

Query:  KEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIP
        KEKDSDRGRHMKGFDRSKVREPAPIVVEDE+EEV +ED GEVIDEIVR KYFDMPPLT+EEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIP
Subjt:  KEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIP

Query:  KENGRAEKLESVTVEAAREPSLAE
        KENGRAEKLESVT++AAREPSLAE
Subjt:  KENGRAEKLESVTVEAAREPSLAE

TrEMBL top hitse value%identityAlignment
A0A1S3CCT7 ribosome-binding factor PSRP1, chloroplastic1.6e-14889.44Show/hide
Query:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLS
        +ATLTSSMQAN+LSDHSL PP              SSST+S+FP+ FSLHFSALKV ALSSN SAFFNSCK+F TIETASRNRH SNSFSIRM+WDG LS
Subjt:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLS

Query:  SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE
        SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+ASIDLVSSIIQRKLRKIKE
Subjt:  SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE

Query:  KDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE
        KDSDRGRH+KGFDRSKVREPAPIVVEDEEEEV QEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE
Subjt:  KDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE

Query:  NGRAEKLESVTVEAAREPSLAE
        NG AEKLE VTVEAAREPSLAE
Subjt:  NGRAEKLESVTVEAAREPSLAE

A0A5D3BQR1 Ribosome-binding factor PSRP11.6e-14889.44Show/hide
Query:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLS
        +ATLTSSMQAN+LSDHSL PP              SSST+S+FP+ FSLHFSALKV ALSSN SAFFNSCK+F TIETASRNRH SNSFSIRM+WDG LS
Subjt:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLS

Query:  SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE
        SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+ASIDLVSSIIQRKLRKIKE
Subjt:  SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE

Query:  KDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE
        KDSDRGRH+KGFDRSKVREPAPIVVEDEEEEV QEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE
Subjt:  KDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE

Query:  NGRAEKLESVTVEAAREPSLAE
        NG AEKLE VTVEAAREPSLAE
Subjt:  NGRAEKLESVTVEAAREPSLAE

A0A6J1CJG5 ribosome-binding factor PSRP1, chloroplastic1.3e-13482.93Show/hide
Query:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSL----HFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWD
        +ATLTSSM  N+L                  S+ SSSST S FP+SFSL    + SALK+  LSS+TS FFNSC  F TI+ A RNRH +NSF+IRMSWD
Subjt:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSL----HFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWD

Query:  GPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLR
        GPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR EEDAETVYASIDLVSSIIQRKLR
Subjt:  GPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLR

Query:  KIKEKDSDRGRHMKGFDRSKVREPAPIVVED--EEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYG
        KIKEKDSDRGRHMKGFDR KVREPAPIVVED  EEEEV  ED GEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYG
Subjt:  KIKEKDSDRGRHMKGFDRSKVREPAPIVVED--EEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYG

Query:  LIIPKENGRAEKLESVTVEAAREPSLAE
        LIIPKENGRAEKLE VTVE AREPSLAE
Subjt:  LIIPKENGRAEKLESVTVEAAREPSLAE

A0A6J1E3S3 ribosome-binding factor PSRP1, chloroplastic2.2e-13784.1Show/hide
Query:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSL----HFSALKVQALSSNTSAFFNSCK-SFRTIETASRNRHGSNSFSIRMSW
        +A LTSSMQ N+LS HSL+P          SSSSSSSST+S FP+SFSL    + + LK  ALSS+ SAFFNSC   FRTI  A R RH + SFSIRMSW
Subjt:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSL----HFSALKVQALSSNTSAFFNSCK-SFRTIETASRNRHGSNSFSIRMSW

Query:  DGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKL
        DGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSI+QRKL
Subjt:  DGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKL

Query:  RKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGL
        RKIKEKDSD GRHMKGFDRSK+REPAPIVVEDEEEEV QEDGGE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGL
Subjt:  RKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGL

Query:  IIPKENGRAEKLESVTVEAAREPSLAE
        IIPKE+G AEK+E+VTVE ARE SLAE
Subjt:  IIPKENGRAEKLESVTVEAAREPSLAE

A0A6J1J523 ribosome-binding factor PSRP1, chloroplastic1.7e-13488.33Show/hide
Query:  SSSSSSSSSSSTISFFPSSFSL----HFSALKVQALSSNTSAFFNSCK-SFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVE
        SSSSSSSSSSST+S FP+SFSL    + + LK+ ALSS+ SAFFNSC   FRTI  A R RH + SFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVE
Subjt:  SSSSSSSSSSSTISFFPSSFSL----HFSALKVQALSSNTSAFFNSCK-SFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVE

Query:  EKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAP
        EKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSI+QRKLRKIKEKDSD GRHMKGFDRSK+REPAP
Subjt:  EKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAP

Query:  IVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKLESVTVEAAREPSLAE
        IVVEDEEEEV QEDGGE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG AEK+E+VTVE ARE SLAE
Subjt:  IVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKLESVTVEAAREPSLAE

SwissProt top hitse value%identityAlignment
P19954 Ribosome-binding factor PSRP1, chloroplastic5.3e-8858.6Show/hide
Query:  SLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEA
        +++P L++S S+S + SS+ ++                    LSS  S F NSC     +   S     +    + MSWDGPLSSVKLI+QG+NLE+++ 
Subjt:  SLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEA

Query:  VKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSK
        V+ HVE+KVGK+V KHSHLVREVDVRLS RGG+  KGP++RRCEVTLFTK+HGV+RAEEDAE++Y+SIDLVSSIIQRKLRKIK+K SD GRHMKGF+RSK
Subjt:  VKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSK

Query:  VREPAPIVVEDEE--EEV------VQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKLE
        VR+P P+ +  EE  EEV      V  +  + I+E+VRTKYFDMPPLT+ EA+EQL+N+DHDFY FRNEETG+INILYKRK+GGYGLIIPK+ G+ EKLE
Subjt:  VREPAPIVVEDEE--EEV------VQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKLE

Query:  SVTVEAAREPSLAE
        S+ V+  ++PS AE
Subjt:  SVTVEAAREPSLAE

P47908 Ribosome hibernation promotion factor1.6e-3140.4Show/hide
Query:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK
        +KL++QG N+ +TE++  +VE K+ KA +       +VDV LSV      +     + EVT++     V+RA+E +E +YASIDLVS  I R+LRK KEK
Subjt:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK

Query:  DSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK
        +  +  H+    + K  E  P   +   + ++ +   E+  E+VR KYF MPP+T++EA+EQL+ +DHDFY F N++T  IN++Y R  GGYG+I P+
Subjt:  DSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK

P47995 Ribosome hibernation promotion factor4.7e-2033Show/hide
Query:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK
        ++  + G NL +T+A++ ++E+KVGK ++++   V  V+  + V+           + EVT+       +RAEE  + +YA IDL+++ ++R++RK K +
Subjt:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK

Query:  DSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEN
         + + R      +    EP P   E   E  V  D  + I EI+R+K F + P+  EEA+ Q+  + HDF+ F + ET   +I+Y+RKDG YGLI   EN
Subjt:  DSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEN

P74518 Ribosome hibernation promotion factor6.8e-3542.57Show/hide
Query:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRI---RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKI
        +KL++QG N+ +TEA+  +VEEKV +AV+   +L  +VDV LSV      +  RI    + EVT++     V+RA+E +E +YASIDLV+  I R+LRK 
Subjt:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRI---RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKI

Query:  KEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIP
        KE+  D  +       S++ E  P+     EE ++ +   E+  E++R KYF MPP+ +E+A+EQL+ +DHDFY FRN++T EIN++Y R  GGYG+I P
Subjt:  KEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIP

Query:  KE
         +
Subjt:  KE

Q9RVE7 Ribosome hibernation promotion factor4.7e-2033.51Show/hide
Query:  VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDR
        + G+N+E+TE ++++VEEK+ + + +++  + +  V L+VR  +     R  R EV L     G++RAEE    +YA+ID  S +++R+LRK K      
Subjt:  VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDR

Query:  GRHMKGFDRSK---VREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLI
         R+MK     +   +  PA   V  +      +D  E   EIVR K F++ P++ E+A+ Q++ + HDFY F++ + G+  ++Y+R+DG YGLI
Subjt:  GRHMKGFDRSK---VREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLI

Arabidopsis top hitse value%identityAlignment
AT5G24490.1 30S ribosomal protein, putative4.9e-9773.39Show/hide
Query:  RNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV
        R+ +  +S +++MSWDGPL+SVKLI+QGKNLEL+E +K+HVEEKVGK+VQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV
Subjt:  RNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV

Query:  YASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPA--PIV--VEDEEEEVV--QEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGF
        YA IDLVS+IIQRKLRKIKEKDSD GRHMKGF+R KVREP   P+V  VED  +  V  +E+  ++I EIVRTK F+MPPLTV EA+EQL+ + HDFYGF
Subjt:  YASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPA--PIV--VEDEEEEVV--QEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGF

Query:  RNEETGEINILYKRKDGGYGLIIPKENGRAEKLESVTVEAAREPSLAE
        +NEETGEINI+YKRK+GGYGLIIPK++G+AEK+E +  E   E S AE
Subjt:  RNEETGEINILYKRKDGGYGLIIPKENGRAEKLESVTVEAAREPSLAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGCCACTCTCACCTCTTCCATGCAGGCCAATATCCTTTCCGACCATTCCTTATCTCCTCCTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTC
TTCTTCTACCATTTCTTTCTTTCCCTCTTCCTTCTCTCTTCACTTCTCTGCTCTCAAAGTTCAGGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCT
TTCGAACCATTGAAACTGCATCCCGCAACCGTCATGGCTCAAACTCTTTCAGTATTCGGATGTCCTGGGACGGCCCCCTATCCTCTGTCAAATTAATTGTCCAAGGCAAA
AATTTGGAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTAGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAG
AGGTGGGGAGTTCGGGAAGGGTCCAAGGATTAGAAGATGCGAGGTTACTTTGTTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCTGAGACCGTCTATGCAA
GCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCGCGGCCGACACATGAAAGGATTTGACAGATCGAAAGTAAGAGAA
CCTGCACCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTGTTCAAGAAGATGGTGGAGAAGTTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGAC
AGTTGAAGAAGCAATCGAACAACTTAAAAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGAT
ATGGACTTATTATCCCAAAAGAAAATGGCAGAGCTGAGAAATTAGAATCTGTGACGGTTGAAGCAGCCAGAGAACCATCCTTGGCGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGCCACTCTCACCTCTTCCATGCAGGCCAATATCCTTTCCGACCATTCCTTATCTCCTCCTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTC
TTCTTCTACCATTTCTTTCTTTCCCTCTTCCTTCTCTCTTCACTTCTCTGCTCTCAAAGTTCAGGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCT
TTCGAACCATTGAAACTGCATCCCGCAACCGTCATGGCTCAAACTCTTTCAGTATTCGGATGTCCTGGGACGGCCCCCTATCCTCTGTCAAATTAATTGTCCAAGGCAAA
AATTTGGAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTAGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAG
AGGTGGGGAGTTCGGGAAGGGTCCAAGGATTAGAAGATGCGAGGTTACTTTGTTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCTGAGACCGTCTATGCAA
GCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCGCGGCCGACACATGAAAGGATTTGACAGATCGAAAGTAAGAGAA
CCTGCACCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTGTTCAAGAAGATGGTGGAGAAGTTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGAC
AGTTGAAGAAGCAATCGAACAACTTAAAAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGAT
ATGGACTTATTATCCCAAAAGAAAATGGCAGAGCTGAGAAATTAGAATCTGTGACGGTTGAAGCAGCCAGAGAACCATCCTTGGCGGAATGA
Protein sequenceShow/hide protein sequence
MVATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGK
NLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVRE
PAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKLESVTVEAAREPSLAE