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Lsi10G007970 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G007970
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPMD domain-containing protein
Genome locationchr10:10782412..10783719
RNA-Seq ExpressionLsi10G007970
SyntenyLsi10G007970
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAV91288.1 hypothetical protein CFOL_v3_34685, partial [Cephalotus follicularis]4.4e-4679.84Show/hide
Query:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELCYKAAPATHPSRGLSQRHVPLGTGRPLLLVGNQVMGTCIASNPDSNLEAFSHNPAH
        RDESER+RAESQ IVAAR LCHLQYPVAYLSRL+RILP AR    +KAA    PSRGL QRHVPLGT RPLLLVG +  G C+AS+PDS+LEAFSHNPAH
Subjt:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELCYKAAPATHPSRGLSQRHVPLGTGRPLLLVGNQVMGTCIASNPDSNLEAFSHNPAH

Query:  GSFAPLAFQPSAMTNCANQQFLSY
        GSFAPLAFQPSAMTNCANQ+FLSY
Subjt:  GSFAPLAFQPSAMTNCANQQFLSY

KAF3613408.1 hypothetical protein FXO37_36392 [Capsicum annuum]5.2e-4778.57Show/hide
Query:  VGRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELCYKAAPATHPSRGLSQRHVPLGTGRPLLLVGNQVMGTCIASNPDSNLEAFSHNP
        +GRDE ER+RAESQWIVAARPLCHLQYPVAYLSRLQRILPAARW+L +KAA AT P R  SQRHVPLG+ RPLL VG +  G  IAS+PDS+LEAF HNP
Subjt:  VGRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELCYKAAPATHPSRGLSQRHVPLGTGRPLLLVGNQVMGTCIASNPDSNLEAFSHNP

Query:  AHGSFAPLAFQPSAMTNCANQQFLSY
        +HGSF PLAFQPSAMTNC NQ+FLSY
Subjt:  AHGSFAPLAFQPSAMTNCANQQFLSY

KAG8375836.1 hypothetical protein BUALT_Bualt09G0000500 [Buddleja alternifolia]1.4e-4780Show/hide
Query:  GRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELCYKAAPATHPSRGLSQRHVPLGTGRPLLLVGNQVMGTCIASNPDSNLEAFSHNPA
        G DESER+RAESQ IVAARPLC LQYPVAYLSRLQRILPAARWEL +KAA A  P RGL QRHVPLG   PLL VG +  G  +AS+PDS+LEAFSHNPA
Subjt:  GRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELCYKAAPATHPSRGLSQRHVPLGTGRPLLLVGNQVMGTCIASNPDSNLEAFSHNPA

Query:  HGSFAPLAFQPSAMTNCANQQFLSY
        HGSFAPLAFQPSAMTNCANQ+FLSY
Subjt:  HGSFAPLAFQPSAMTNCANQQFLSY

OPH47798.1 hypothetical protein B4U81_25600, partial [Vibrio campbellii]2.0e-4679.03Show/hide
Query:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELCYKAAPATHPSRGLSQRHVPLGTGRPLLLVGNQVMGTCIASNPDSNLEAFSHNPAH
        R  S RRRAESQ IVAARPLC LQYPVAYLSRLQRILPAARWEL + A  A  P  GL QRHVPLG  RPLLLVG +  G C+AS+PDS+LEAFSHNPAH
Subjt:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELCYKAAPATHPSRGLSQRHVPLGTGRPLLLVGNQVMGTCIASNPDSNLEAFSHNPAH

Query:  GSFAPLAFQPSAMTNCANQQFLSY
        GSFAPLAFQPSAMTNCANQ+FLSY
Subjt:  GSFAPLAFQPSAMTNCANQQFLSY

TXG51762.1 hypothetical protein EZV62_024286 [Acer yangbiense]9.4e-4977.21Show/hide
Query:  NLYTITGMGVGRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELCYKAAPATHPSRGLSQRHVPLGTGRPLLLVGNQVM-GTCIASNPD
        NLY +    +GRDESER RAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWEL +KAA A  P  GL QRHVPLGT R LL VG +   G    S+PD
Subjt:  NLYTITGMGVGRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELCYKAAPATHPSRGLSQRHVPLGTGRPLLLVGNQVM-GTCIASNPD

Query:  SNLEAFSHNPAHGSFAPLAFQPSAMTNCANQQFLSY
        S+LEAFSHNPAHGSFAPLAFQPSAMTNCANQ+FLSY
Subjt:  SNLEAFSHNPAHGSFAPLAFQPSAMTNCANQQFLSY

TrEMBL top hitse value%identityAlignment
A0A1Q3DGA9 Uncharacterized protein (Fragment)2.1e-4679.84Show/hide
Query:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELCYKAAPATHPSRGLSQRHVPLGTGRPLLLVGNQVMGTCIASNPDSNLEAFSHNPAH
        RDESER+RAESQ IVAAR LCHLQYPVAYLSRL+RILP AR    +KAA    PSRGL QRHVPLGT RPLLLVG +  G C+AS+PDS+LEAFSHNPAH
Subjt:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELCYKAAPATHPSRGLSQRHVPLGTGRPLLLVGNQVMGTCIASNPDSNLEAFSHNPAH

Query:  GSFAPLAFQPSAMTNCANQQFLSY
        GSFAPLAFQPSAMTNCANQ+FLSY
Subjt:  GSFAPLAFQPSAMTNCANQQFLSY

A0A2G2UUV0 Uncharacterized protein2.8e-4672.79Show/hide
Query:  GRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELCYKAAPATHPSRGLSQRHVPLGT-----------GRPLLLVGNQVMGTCIASNPD
        GRD+ ER+RAESQWIVAARPLCHLQYPVAYLSRLQRILPAARW+L +KAA AT   R LSQ+HVPLG             RPLL VG +  G C+AS+PD
Subjt:  GRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELCYKAAPATHPSRGLSQRHVPLGT-----------GRPLLLVGNQVMGTCIASNPD

Query:  SNLEAFSHNPAHGSFAPLAFQPSAMTNCANQQFLSY
        S+LEAFSHNPAHGSFAPLAFQPSAMTN  NQ+FLSY
Subjt:  SNLEAFSHNPAHGSFAPLAFQPSAMTNCANQQFLSY

A0A5C7H5R6 Uncharacterized protein4.6e-4977.21Show/hide
Query:  NLYTITGMGVGRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELCYKAAPATHPSRGLSQRHVPLGTGRPLLLVGNQVM-GTCIASNPD
        NLY +    +GRDESER RAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWEL +KAA A  P  GL QRHVPLGT R LL VG +   G    S+PD
Subjt:  NLYTITGMGVGRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELCYKAAPATHPSRGLSQRHVPLGTGRPLLLVGNQVM-GTCIASNPD

Query:  SNLEAFSHNPAHGSFAPLAFQPSAMTNCANQQFLSY
        S+LEAFSHNPAHGSFAPLAFQPSAMTNCANQ+FLSY
Subjt:  SNLEAFSHNPAHGSFAPLAFQPSAMTNCANQQFLSY

A0A6A1V4X9 Uncharacterized protein4.7e-4681.9Show/hide
Query:  GRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELCYKAAPATHPSRGLSQRHVPLGTGRPLLLVGNQVMGTCIASNPDSNLEAFSHNPA
        GRDES+R RAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWEL +KAA A  P RGL QRHVPLG G PLL VGN+  G  +AS+PDS+LEAFSHNP 
Subjt:  GRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELCYKAAPATHPSRGLSQRHVPLGTGRPLLLVGNQVMGTCIASNPDSNLEAFSHNPA

Query:  HGSFAPLAFQPSAMTN
        HGSFAPLAFQPSAMTN
Subjt:  HGSFAPLAFQPSAMTN

A0A6A1VJA4 Uncharacterized protein4.7e-4681.9Show/hide
Query:  GRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELCYKAAPATHPSRGLSQRHVPLGTGRPLLLVGNQVMGTCIASNPDSNLEAFSHNPA
        GRDES+R RAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWEL +KAA A  P RGL QRHVPLG G PLL VGN+  G  +AS+PDS+LEAFSHNP 
Subjt:  GRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELCYKAAPATHPSRGLSQRHVPLGTGRPLLLVGNQVMGTCIASNPDSNLEAFSHNPA

Query:  HGSFAPLAFQPSAMTN
        HGSFAPLAFQPSAMTN
Subjt:  HGSFAPLAFQPSAMTN

SwissProt top hitse value%identityAlignment
P05790 Fibroin heavy chain2.5e-0442.86Show/hide
Query:  GWGAGWACGTRTGAGWAWGARK--GAGWACGTRTGAGWAWGARKGAGWACGTRTGAGWAWGARKGAGWACGTRTGAGWAWGARKGAGWACGTRTGAGWAW
        G GAG+  G   GAG  +GA    GAG+  G   G G A GA  GAG   G   GAG+  GA  GAG   G   GAG  +GA  GAG+  G   GAG  +
Subjt:  GWGAGWACGTRTGAGWAWGARK--GAGWACGTRTGAGWAWGARKGAGWACGTRTGAGWAWGARKGAGWACGTRTGAGWAWGARKGAGWACGTRTGAGWAW

Query:  GARKGAGWACGTRTGAGWAWGARTGELDGHGARRGAGWRLAHGALGGRAHGASA
        GA  GAG   G  +GAG   GA +G   G GA  G+G     GA  G   GA +
Subjt:  GARKGAGWACGTRTGAGWAWGARTGELDGHGARRGAGWRLAHGALGGRAHGASA

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCACGCGCACGGGGGCTGGGGGGCTGGGTGGGCATGTGGCACGCGCACGGGGGCTGGGTGGGCATGGGGCGCTCGCAAGGGGGCTGGGTGGGCATGTGGCACGCG
CACGGGGGCTGGGTGGGCATGGGGCGCTCGCAAGGGGGCTGGGTGGGCATGTGGCACGCGCACGGGGGCTGGGTGGGCATGGGGCGCTCGCAAGGGGGCTGGGTGGGCAT
GTGGCACGCGCACGGGGGCTGGGTGGGCATGGGGCGCTCGCAAGGGGGCTGGGTGGGCATGTGGCACGCGCACGGGGGCTGGGTGGGCATGGGGCGCTCGCAAGGGGGCT
GGGTGGGCATGTGGCACGCGCACGGGGGCTGGGTGGGCATGGGGCGCACGCACGGGGGAGTTGGATGGGCATGGGGCGCGCAGGGGTGCTGGGTGGAGGCTTGCGCATGG
GGCGCTGGGTGGGCGTGCGCACGGAGCCAGTGCCACTAACCTCTATACAATTACAGGGATGGGCGTGGGCAGGGACGAATCGGAGCGACGAAGGGCTGAATCTCAGTGGA
TCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCTGTCGCGTATTTAAGTCGTCTGCAAAGGATTCTACCCGCCGCTCGGTGGGAATTATGTTACAAGGCAGCCCCC
GCGACTCATCCGTCACGTGGGCTTAGCCAACGACACGTGCCTTTGGGGACCGGAAGGCCCCTACTGCTGGTCGGCAATCAAGTGATGGGCACATGCATCGCTTCTAACCC
GGATTCTAACTTAGAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACAGTTCCTCTCGT
ACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGCACGCGCACGGGGGCTGGGGGGCTGGGTGGGCATGTGGCACGCGCACGGGGGCTGGGTGGGCATGGGGCGCTCGCAAGGGGGCTGGGTGGGCATGTGGCACGCG
CACGGGGGCTGGGTGGGCATGGGGCGCTCGCAAGGGGGCTGGGTGGGCATGTGGCACGCGCACGGGGGCTGGGTGGGCATGGGGCGCTCGCAAGGGGGCTGGGTGGGCAT
GTGGCACGCGCACGGGGGCTGGGTGGGCATGGGGCGCTCGCAAGGGGGCTGGGTGGGCATGTGGCACGCGCACGGGGGCTGGGTGGGCATGGGGCGCTCGCAAGGGGGCT
GGGTGGGCATGTGGCACGCGCACGGGGGCTGGGTGGGCATGGGGCGCACGCACGGGGGAGTTGGATGGGCATGGGGCGCGCAGGGGTGCTGGGTGGAGGCTTGCGCATGG
GGCGCTGGGTGGGCGTGCGCACGGAGCCAGTGCCACTAACCTCTATACAATTACAGGGATGGGCGTGGGCAGGGACGAATCGGAGCGACGAAGGGCTGAATCTCAGTGGA
TCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCTGTCGCGTATTTAAGTCGTCTGCAAAGGATTCTACCCGCCGCTCGGTGGGAATTATGTTACAAGGCAGCCCCC
GCGACTCATCCGTCACGTGGGCTTAGCCAACGACACGTGCCTTTGGGGACCGGAAGGCCCCTACTGCTGGTCGGCAATCAAGTGATGGGCACATGCATCGCTTCTAACCC
GGATTCTAACTTAGAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACAGTTCCTCTCGT
ACTAG
Protein sequenceShow/hide protein sequence
MWHAHGGWGAGWACGTRTGAGWAWGARKGAGWACGTRTGAGWAWGARKGAGWACGTRTGAGWAWGARKGAGWACGTRTGAGWAWGARKGAGWACGTRTGAGWAWGARKGA
GWACGTRTGAGWAWGARTGELDGHGARRGAGWRLAHGALGGRAHGASATNLYTITGMGVGRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELCYKAAP
ATHPSRGLSQRHVPLGTGRPLLLVGNQVMGTCIASNPDSNLEAFSHNPAHGSFAPLAFQPSAMTNCANQQFLSY