; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G007990 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G007990
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr10:10786996..10787927
RNA-Seq ExpressionLsi10G007990
SyntenyLsi10G007990
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF1856229.1 hypothetical protein Lal_00046831 [Lupinus albus]5.4e-5858.37Show/hide
Query:  SPFHIRLGHIAGPHPLPSRQFQALFDSLCKVLFIFPSRYLFAIGLSPIFSLGQNLPLDWGCIPKQPNSLTVPCGATGSERMGLSPSLAPPSRGLVHGPPL
        SPFHIR  HIAGPHPLPSRQFQALFDSL KVLFIFPSRYLFAIGLSP+FSLG+NLP DW   P  P          G    GLSPS APPSRGL  GPPL
Subjt:  SPFHIRLGHIAGPHPLPSRQFQALFDSLCKVLFIFPSRYLFAIGLSPIFSLGQNLPLDWGCIPKQPNSLTVPCGATGSERMGLSPSLAPPSRGLVHGPPL

Query:  RTLLQTTIRTSRTPDSQVGLFPVRSPLLGESLSPQE---------GGVKFATRYRGWINHRSVTTTGAKDSNLSHPRDGRRALGQKAP------GATCVQ
        RTLLQTTIRT R  DS  GLFPVRSPLL ESL P +         GG     R R      S+T     DS+++  R  R A  ++A       G     
Subjt:  RTLLQTTIRTSRTPDSQVGLFPVRSPLLGESLSPQE---------GGVKFATRYRGWINHRSVTTTGAKDSNLSHPRDGRRALGQKAP------GATCVQ

Query:  RLGGSQDPAIHTKYRILLRSSSMREPRYPLPRV
        +     D AIHTKYRI LRSSSM+EPRYPLPRV
Subjt:  RLGGSQDPAIHTKYRILLRSSSMREPRYPLPRV

KAF1856637.1 hypothetical protein Lal_00043456 [Lupinus albus]2.4e-5860.09Show/hide
Query:  SPFHIRLGHIAGPHPLPSRQFQALFDSLCKVLFIFPSRYLFAIGLSPIFSLGQNLPLDWGCIPKQPNSLTVPCGATGSERMGLSPSLAPPSRGLVHGPPL
        SPFHIR  HIAGPHPLPSRQFQALFDSL KVLFIFPSRYLFAIGLSP+FSLG+NLP DWGCIPKQP+S T P GATGS   G       P +GL  GPPL
Subjt:  SPFHIRLGHIAGPHPLPSRQFQALFDSLCKVLFIFPSRYLFAIGLSPIFSLGQNLPLDWGCIPKQPNSLTVPCGATGSERMGLSPSLAPPSRGLVHGPPL

Query:  RTLLQTTIRTSRTPDSQVGLFPVRSPLLGESLSPQEGGVKFATRYRGWINHRSVTTTGAKDSNLSHPRDGRRALGQKAPGATCVQRLGGSQDPAIHTKYR
        RTLLQTTIRT R  DS  GLFP  +   G S S + GG     R R      S+T     DS  + P    RALG  A GATCVQRL GS+D AIHTKYR
Subjt:  RTLLQTTIRTSRTPDSQVGLFPVRSPLLGESLSPQEGGVKFATRYRGWINHRSVTTTGAKDSNLSHPRDGRRALGQKAPGATCVQRLGGSQDPAIHTKYR

Query:  ILLR-----SSSMREPRYPLPRVVVTNN
        I LR     S  +R P   L R+++  N
Subjt:  ILLR-----SSSMREPRYPLPRVVVTNN

KAF1891693.1 hypothetical protein Lal_00031661 [Lupinus albus]4.4e-5257.52Show/hide
Query:  SPFHIRLGHIAGPHPLPSRQFQALFDSLCKVLFIFPSRYLFAIGLSPIFSLGQNLPLDWGCIPKQPNSLTVPCGATGSERMG-LSPSLAPPSRGLVHGPP
        SPFHIR  HIAGPHPLPSRQFQALFDSL KVLFIFPSRYLFAIGLSP+FSLG+NLP DWGCIPKQP+S T P GATGS   G L+ S AP       G  
Subjt:  SPFHIRLGHIAGPHPLPSRQFQALFDSLCKVLFIFPSRYLFAIGLSPIFSLGQNLPLDWGCIPKQPNSLTVPCGATGSERMG-LSPSLAPPSRGLVHGPP

Query:  LRTLLQTTIRTSRTPDSQVGLFPVRSPLLGESLSPQEGGVKFATRYRGWINHRSVTTTGAKDSNLSHP-------RDGRRALGQKAPGATCVQRLGGSQD
         R+  +         D++   F  R      S S + GG     R R      S+T     DS  + P         GRRALG  A GATCVQRL GS+D
Subjt:  LRTLLQTTIRTSRTPDSQVGLFPVRSPLLGESLSPQEGGVKFATRYRGWINHRSVTTTGAKDSNLSHP-------RDGRRALGQKAPGATCVQRLGGSQD

Query:  PAIHTKYRILLRSSSMREPRYPLPRV
         AIHTKYRI LRSSSM+EPRYPLPRV
Subjt:  PAIHTKYRILLRSSSMREPRYPLPRV

KAF1891766.1 hypothetical protein Lal_00031738 [Lupinus albus]4.4e-5257.52Show/hide
Query:  SPFHIRLGHIAGPHPLPSRQFQALFDSLCKVLFIFPSRYLFAIGLSPIFSLGQNLPLDWGCIPKQPNSLTVPCGATGSERMG-LSPSLAPPSRGLVHGPP
        SPFHIR  HIAGPHPLPSRQFQALFDSL KVLFIFPSRYLFAIGLSP+FSLG+NLP DWGCIPKQP+S T P GATGS   G L+ S AP       G  
Subjt:  SPFHIRLGHIAGPHPLPSRQFQALFDSLCKVLFIFPSRYLFAIGLSPIFSLGQNLPLDWGCIPKQPNSLTVPCGATGSERMG-LSPSLAPPSRGLVHGPP

Query:  LRTLLQTTIRTSRTPDSQVGLFPVRSPLLGESLSPQEGGVKFATRYRGWINHRSVTTTGAKDSNLSHP-------RDGRRALGQKAPGATCVQRLGGSQD
         R+  +         D++   F  R      S S + GG     R R      S+T     DS  + P         GRRALG  A GATCVQRL GS+D
Subjt:  LRTLLQTTIRTSRTPDSQVGLFPVRSPLLGESLSPQEGGVKFATRYRGWINHRSVTTTGAKDSNLSHP-------RDGRRALGQKAPGATCVQRLGGSQD

Query:  PAIHTKYRILLRSSSMREPRYPLPRV
         AIHTKYRI LRSSSM+EPRYPLPRV
Subjt:  PAIHTKYRILLRSSSMREPRYPLPRV

OIV96076.1 hypothetical protein TanjilG_27180 [Lupinus angustifolius]1.0e-5665.59Show/hide
Query:  RRTGSSPFHIRLGHIAGPHPLPSRQFQALFDSLCKVLFIFPSRYLFAIGLSPIFSLGQNLPLDWGCIPKQPNSLTVPCGATGSERMGLSPSLAPPSRGLV
        RR+  SPFHIR  HIAGPHPLPSRQFQALFDSLCKVLFIFP RYLF IGLSP+FSLG+NLP +WGCIPKQP+SL+ P GATG    GLSPSLAPPSRGL 
Subjt:  RRTGSSPFHIRLGHIAGPHPLPSRQFQALFDSLCKVLFIFPSRYLFAIGLSPIFSLGQNLPLDWGCIPKQPNSLTVPCGATGSERMGLSPSLAPPSRGLV

Query:  HGPPLRTLLQTTIRTSRTPDSQVGLFPVRSPLLGESLSPQE---------GGVKFATRYRGWINHRSVTTTGAKDSNLSHPRDGRR
         G PLR LLQTTIRT R  DS  GLFPVRSPLLGESL P +         GG     R R      S+T     DS  + PR G R
Subjt:  HGPPLRTLLQTTIRTSRTPDSQVGLFPVRSPLLGESLSPQE---------GGVKFATRYRGWINHRSVTTTGAKDSNLSHPRDGRR

TrEMBL top hitse value%identityAlignment
A0A0R0GH08 Uncharacterized protein7.5e-5858.92Show/hide
Query:  MPQVDRRTGSSPFHIRLGHIAGPH-PLPSRQFQALFDSLCKVLFIFPSRYLFAIGLSPIFSLGQNLPLDWGCIPKQPNSLTVPCGATGSERMGLSPSLAP
        M +VDRRTGS        H   P   LP+    +  DSL KVLFIFPSRYLFAIGLSP+FSLG+NLP DWGCIPKQP+S T P    G    GLSPSLAP
Subjt:  MPQVDRRTGSSPFHIRLGHIAGPH-PLPSRQFQALFDSLCKVLFIFPSRYLFAIGLSPIFSLGQNLPLDWGCIPKQPNSLTVPCGATGSERMGLSPSLAP

Query:  PSRGLVHGPPLRTLLQTTIRTSRTPDSQVGLFPVRSPLLGESLSPQEGGVKFATRYRGWINHRSVTTTGAKDSNLSHPRDGRRALGQKAPGATCVQRLGG
        PSRGL  GPPLRTLLQTTIRT R  D   GLFPVRSPLL ESL      V F       +N                   GRRALG  A GATCVQRL G
Subjt:  PSRGLVHGPPLRTLLQTTIRTSRTPDSQVGLFPVRSPLLGESLSPQEGGVKFATRYRGWINHRSVTTTGAKDSNLSHPRDGRRALGQKAPGATCVQRLGG

Query:  SQDPAIHTKYRILLRSSSMREPRYPLPRVVVTNNCNNQSPS
        S+D AIHTKYRI LRSSSM+EPRYPLPRV+V   C   +P+
Subjt:  SQDPAIHTKYRILLRSSSMREPRYPLPRVVVTNNCNNQSPS

A0A4P1QWM0 Uncharacterized protein4.9e-5765.59Show/hide
Query:  RRTGSSPFHIRLGHIAGPHPLPSRQFQALFDSLCKVLFIFPSRYLFAIGLSPIFSLGQNLPLDWGCIPKQPNSLTVPCGATGSERMGLSPSLAPPSRGLV
        RR+  SPFHIR  HIAGPHPLPSRQFQALFDSLCKVLFIFP RYLF IGLSP+FSLG+NLP +WGCIPKQP+SL+ P GATG    GLSPSLAPPSRGL 
Subjt:  RRTGSSPFHIRLGHIAGPHPLPSRQFQALFDSLCKVLFIFPSRYLFAIGLSPIFSLGQNLPLDWGCIPKQPNSLTVPCGATGSERMGLSPSLAPPSRGLV

Query:  HGPPLRTLLQTTIRTSRTPDSQVGLFPVRSPLLGESLSPQE---------GGVKFATRYRGWINHRSVTTTGAKDSNLSHPRDGRR
         G PLR LLQTTIRT R  DS  GLFPVRSPLLGESL P +         GG     R R      S+T     DS  + PR G R
Subjt:  HGPPLRTLLQTTIRTSRTPDSQVGLFPVRSPLLGESLSPQE---------GGVKFATRYRGWINHRSVTTTGAKDSNLSHPRDGRR

A0A6A5L505 Uncharacterized protein1.2e-5860.09Show/hide
Query:  SPFHIRLGHIAGPHPLPSRQFQALFDSLCKVLFIFPSRYLFAIGLSPIFSLGQNLPLDWGCIPKQPNSLTVPCGATGSERMGLSPSLAPPSRGLVHGPPL
        SPFHIR  HIAGPHPLPSRQFQALFDSL KVLFIFPSRYLFAIGLSP+FSLG+NLP DWGCIPKQP+S T P GATGS   G       P +GL  GPPL
Subjt:  SPFHIRLGHIAGPHPLPSRQFQALFDSLCKVLFIFPSRYLFAIGLSPIFSLGQNLPLDWGCIPKQPNSLTVPCGATGSERMGLSPSLAPPSRGLVHGPPL

Query:  RTLLQTTIRTSRTPDSQVGLFPVRSPLLGESLSPQEGGVKFATRYRGWINHRSVTTTGAKDSNLSHPRDGRRALGQKAPGATCVQRLGGSQDPAIHTKYR
        RTLLQTTIRT R  DS  GLFP  +   G S S + GG     R R      S+T     DS  + P    RALG  A GATCVQRL GS+D AIHTKYR
Subjt:  RTLLQTTIRTSRTPDSQVGLFPVRSPLLGESLSPQEGGVKFATRYRGWINHRSVTTTGAKDSNLSHPRDGRRALGQKAPGATCVQRLGGSQDPAIHTKYR

Query:  ILLR-----SSSMREPRYPLPRVVVTNN
        I LR     S  +R P   L R+++  N
Subjt:  ILLR-----SSSMREPRYPLPRVVVTNN

A0A6A5L648 Uncharacterized protein2.6e-5858.37Show/hide
Query:  SPFHIRLGHIAGPHPLPSRQFQALFDSLCKVLFIFPSRYLFAIGLSPIFSLGQNLPLDWGCIPKQPNSLTVPCGATGSERMGLSPSLAPPSRGLVHGPPL
        SPFHIR  HIAGPHPLPSRQFQALFDSL KVLFIFPSRYLFAIGLSP+FSLG+NLP DW   P  P          G    GLSPS APPSRGL  GPPL
Subjt:  SPFHIRLGHIAGPHPLPSRQFQALFDSLCKVLFIFPSRYLFAIGLSPIFSLGQNLPLDWGCIPKQPNSLTVPCGATGSERMGLSPSLAPPSRGLVHGPPL

Query:  RTLLQTTIRTSRTPDSQVGLFPVRSPLLGESLSPQE---------GGVKFATRYRGWINHRSVTTTGAKDSNLSHPRDGRRALGQKAP------GATCVQ
        RTLLQTTIRT R  DS  GLFPVRSPLL ESL P +         GG     R R      S+T     DS+++  R  R A  ++A       G     
Subjt:  RTLLQTTIRTSRTPDSQVGLFPVRSPLLGESLSPQE---------GGVKFATRYRGWINHRSVTTTGAKDSNLSHPRDGRRALGQKAP------GATCVQ

Query:  RLGGSQDPAIHTKYRILLRSSSMREPRYPLPRV
        +     D AIHTKYRI LRSSSM+EPRYPLPRV
Subjt:  RLGGSQDPAIHTKYRILLRSSSMREPRYPLPRV

A0A6N2KBQ5 Uncharacterized protein4.7e-6058.65Show/hide
Query:  SPFHIRLGHIAGPHPLPSRQFQALFDSLCKVLFIFPSRYLFAIGLSPIFSLGQNLPLDWGCIPKQPNSLTVPCGATGSERMGLSPSLAPPSRGLVHGPPL
        SPFHIR G IAGPHPLPSRQFQALFDSL KVLFIFPSRYLFAIGLSPIFSLG+NLP DWGCIPKQP+S T P GA GS   G       PSRGL  GP L
Subjt:  SPFHIRLGHIAGPHPLPSRQFQALFDSLCKVLFIFPSRYLFAIGLSPIFSLGQNLPLDWGCIPKQPNSLTVPCGATGSERMGLSPSLAPPSRGLVHGPPL

Query:  RTLLQTTIRTSRTPDSQVGLFPVRSPLLGESLSPQEGGVKFATRYRGWINHRS----------VTTTGAKDSNLSHPRDGRR------------------
        RTLLQTTIRT R PDSQ G FPVRSPLLGESL+  +   + + R RG                V  T A+DS L  PR G R                  
Subjt:  RTLLQTTIRTSRTPDSQVGLFPVRSPLLGESLSPQEGGVKFATRYRGWINHRS----------VTTTGAKDSNLSHPRDGRR------------------

Query:  -------ALGQKAPGATCVQRLGGSQDPAIHTKYRIL
                L Q+A GATCVQRL GS+D AIHTKYR +
Subjt:  -------ALGQKAPGATCVQRLGGSQDPAIHTKYRIL

SwissProt top hitse value%identityAlignment
Q8TGM5 Putative uncharacterized protein ART31.4e-0566.67Show/hide
Query:  GATCVQRLGGSQDPAIHTKYRILLRSSSMREPRYPLPRV
        GA CVQR   S++ AIH  YRI LRSSSMREPR PL +V
Subjt:  GATCVQRLGGSQDPAIHTKYRILLRSSSMREPRYPLPRV

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCCAAGTCGATCGGCGGACTGGCTCGTCACCATTCCACATTCGACTGGGGCACATCGCCGGCCCCCATCCGCTTCCCTCCCGACAATTTCAAGCACTATTTGACTC
TCTTTGCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTCGCCCATATTTAGCCTTGGACAAAATTTACCGCTCGATTGGGGCTGCATTCCCA
AACAACCCAACTCGTTGACAGTGCCTTGTGGTGCGACAGGGTCCGAGCGCATGGGGCTTTCACCCTCTCTGGCGCCCCCTTCCAGGGGACTTGTGCACGGTCCGCCGCTG
AGGACGCTTCTCCAGACTACAATTCGGACGTCGAGGACGCCCGATTCTCAAGTTGGGCTCTTCCCGGTTCGCTCGCCGTTACTAGGGGAATCCTTGAGTCCACAAGAAGG
CGGCGTCAAATTTGCGACGCGGTATCGAGGTTGGATCAACCACCGTAGTGTCACGACGACAGGCGCGAAGGACTCGAATTTAAGCCATCCGCGCGACGGCAGACGTGCCC
TTGGCCAGAAGGCTCCGGGCGCAACTTGCGTTCAAAGACTTGGTGGTTCGCAGGATCCTGCAATTCACACCAAGTATCGCATTTTGCTACGTTCTTCATCGATGCGAGAG
CCGAGATATCCGTTGCCAAGAGTCGTTGTGACCAACAATTGCAATAATCAATCCCCATCACGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCCAAGTCGATCGGCGGACTGGCTCGTCACCATTCCACATTCGACTGGGGCACATCGCCGGCCCCCATCCGCTTCCCTCCCGACAATTTCAAGCACTATTTGACTC
TCTTTGCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTCGCCCATATTTAGCCTTGGACAAAATTTACCGCTCGATTGGGGCTGCATTCCCA
AACAACCCAACTCGTTGACAGTGCCTTGTGGTGCGACAGGGTCCGAGCGCATGGGGCTTTCACCCTCTCTGGCGCCCCCTTCCAGGGGACTTGTGCACGGTCCGCCGCTG
AGGACGCTTCTCCAGACTACAATTCGGACGTCGAGGACGCCCGATTCTCAAGTTGGGCTCTTCCCGGTTCGCTCGCCGTTACTAGGGGAATCCTTGAGTCCACAAGAAGG
CGGCGTCAAATTTGCGACGCGGTATCGAGGTTGGATCAACCACCGTAGTGTCACGACGACAGGCGCGAAGGACTCGAATTTAAGCCATCCGCGCGACGGCAGACGTGCCC
TTGGCCAGAAGGCTCCGGGCGCAACTTGCGTTCAAAGACTTGGTGGTTCGCAGGATCCTGCAATTCACACCAAGTATCGCATTTTGCTACGTTCTTCATCGATGCGAGAG
CCGAGATATCCGTTGCCAAGAGTCGTTGTGACCAACAATTGCAATAATCAATCCCCATCACGATGA
Protein sequenceShow/hide protein sequence
MPQVDRRTGSSPFHIRLGHIAGPHPLPSRQFQALFDSLCKVLFIFPSRYLFAIGLSPIFSLGQNLPLDWGCIPKQPNSLTVPCGATGSERMGLSPSLAPPSRGLVHGPPL
RTLLQTTIRTSRTPDSQVGLFPVRSPLLGESLSPQEGGVKFATRYRGWINHRSVTTTGAKDSNLSHPRDGRRALGQKAPGATCVQRLGGSQDPAIHTKYRILLRSSSMRE
PRYPLPRVVVTNNCNNQSPSR