; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G008080 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G008080
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr10:11027061..11030138
RNA-Seq ExpressionLsi10G008080
SyntenyLsi10G008080
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038888551.1 zonadhesin-like isoform X2 [Benincasa hispida]1.9e-2139.53Show/hide
Query:  TFPTSTSTSFPTPTSTFFPTPLLLHSHLYL---LLHHSLPRPVRGDRRKGGRKRKGVDKYTPTDTRPKKTMKHETASAQ------SFKYPLPGVYAPMGR
        T P   S + P P S   P+P  +   +     +LH  L   V  + RK  RKRK VDKYTP     KK  K +    Q      + KYPLPGV     +
Subjt:  TFPTSTSTSFPTPTSTFFPTPLLLHSHLYL---LLHHSLPRPVRGDRRKGGRKRKGVDKYTPTDTRPKKTMKHETASAQ------SFKYPLPGVYAPMGR

Query:  PRVSYNIAHDVPSGVFDGMMSWIANKITDSEFRVNSYKPLFKKFFEELTEPSSWVECDPIKFMFRFIADKFH
          + Y++ H+VP+ +   M++WI +K TD+E R N+ +PL K FF+ELTEPSSWVEC+ +  +F F+ +KF+
Subjt:  PRVSYNIAHDVPSGVFDGMMSWIANKITDSEFRVNSYKPLFKKFFEELTEPSSWVECDPIKFMFRFIADKFH

XP_038891295.1 uncharacterized protein LOC120080742 [Benincasa hispida]1.8e-2451.67Show/hide
Query:  DRRKGGRKRKGVDKYTPTDTRPKKTMKHET-ASAQSFKYPLPGVYAPMGRPRVSYNIAHDVPSGVFDGMMSWIANKITDSEFRVNSYKPLFKKFFEELTE
        + R+  RKRKG+DKYTP     KK++      S +  KYPLPGV   + R  V YN+AHDVP  +F  MM WI N+  D+E R NS+KPL K+FF+EL E
Subjt:  DRRKGGRKRKGVDKYTPTDTRPKKTMKHET-ASAQSFKYPLPGVYAPMGRPRVSYNIAHDVPSGVFDGMMSWIANKITDSEFRVNSYKPLFKKFFEELTE

Query:  PSSWVECDPIKFMFRFIADK
        PSSWVECD I  +F F+  K
Subjt:  PSSWVECDPIKFMFRFIADK

XP_038892557.1 uncharacterized protein LOC120081601 [Benincasa hispida]2.3e-1931.78Show/hide
Query:  MSNMMEEDTSNSLESEEDEHDNDSD----DGGDDQDDRKGQDDREDRENRDDREDRDDRDDGDAQFDSDDRVHGDDGVDCDDRDDVD----DVNTSEPTN
        M  + E  + ++ E    E ++D D    +  D+    +G DD E  E+ D    + +        D  D + GD   + D+ + VD    +  T  P +
Subjt:  MSNMMEEDTSNSLESEEDEHDNDSD----DGGDDQDDRKGQDDREDRENRDDREDRDDRDDGDAQFDSDDRVHGDDGVDCDDRDDVD----DVNTSEPTN

Query:  SRMP---TTEPSGFDATPNVYSYLRSIDSSVSRLEG-------RVLKVDDELGVMKAQLTTITSLLQSLIKVCLSFFLLFVCFKYRSLYDVGFEEVTHT-
           P        G +A  + YSYLRSIDS++SRL+G       RV  +++ +  MK QL+ I SLLQS+ K                      EE+T + 
Subjt:  SRMP---TTEPSGFDATPNVYSYLRSIDSSVSRLEG-------RVLKVDDELGVMKAQLTTITSLLQSLIKVCLSFFLLFVCFKYRSLYDVGFEEVTHT-

Query:  --TPRPRFEVTLS---TPTHGFEEVTHTTPTHGFEEVTQTTLRHEFEVAHPTTTSTSFFTPRNGFAEVTFPT-STSTSFPTPTSTFFPTPLLLHSHLYLL
          +  P   VT S    P    +  T  +PT        TT+          TTS     P       T P  S   + P   +     P    S +   
Subjt:  --TPRPRFEVTLS---TPTHGFEEVTHTTPTHGFEEVTQTTLRHEFEVAHPTTTSTSFFTPRNGFAEVTFPT-STSTSFPTPTSTFFPTPLLLHSHLYLL

Query:  LHHSLPRPVRGDRRKGGRKRKGVDKYTPTDTRPKKTMKHETASAQSFKYPLPGVYAPMGRPRVSYNIAHDVPSGVFDGMMSWIANKITDSEFRVNSYKPL
           +    V  D R+  RKRK VDKYTP     KK +          K+PLPGV   + R  V YN+AH +P  +   MMSWI++  T++E R NS+KPL
Subjt:  LHHSLPRPVRGDRRKGGRKRKGVDKYTPTDTRPKKTMKHETASAQSFKYPLPGVYAPMGRPRVSYNIAHDVPSGVFDGMMSWIANKITDSEFRVNSYKPL

Query:  FKKFFEELTEPSSWVECDPIKFMFRFIADKFHSRPKMCMNKFTVIPTGIV
         K+FFEEL  P+S VECD I  +F F+ DKF++RP MCM+KFT++P G++
Subjt:  FKKFFEELTEPSSWVECDPIKFMFRFIADKFHSRPKMCMNKFTVIPTGIV

XP_038902498.1 uncharacterized protein LOC120089158 [Benincasa hispida]1.3e-2539.57Show/hide
Query:  PTSTSTSFPTPTSTFFPTPLLLHSHL---YLLLHHSLPRPVRGDRRKGGRKRKGVDKYTPTDTRPKKTMKHETASAQ------SFKYPLPGVYAPMGRPR
        P   S + P P S   P P  +  ++   + +LH  L   V  + RK  RKRK VDKYTP     KK  K +    Q      + KY LPGV     +  
Subjt:  PTSTSTSFPTPTSTFFPTPLLLHSHL---YLLLHHSLPRPVRGDRRKGGRKRKGVDKYTPTDTRPKKTMKHETASAQ------SFKYPLPGVYAPMGRPR

Query:  VSYNIAHDVPSGVFDGMMSWIANKITDSEFRVNSYKPLFKKFFEELTEPSSWVECDPIKFMFRFIADKFHSRPKMCMNKFTVIPTGI
        + Y++ H+VP      M++WIA++ T++E + N+  PL K FF+ELTEPSSWVECD +  +F F+ +KF+ +P MCM +FT++P GI
Subjt:  VSYNIAHDVPSGVFDGMMSWIANKITDSEFRVNSYKPLFKKFFEELTEPSSWVECDPIKFMFRFIADKFHSRPKMCMNKFTVIPTGI

XP_038906451.1 uncharacterized protein LOC120092435 [Benincasa hispida]3.8e-1454.93Show/hide
Query:  KYPLPGVYAPMGRPRVSYNIAHDVPSGVFDGMMSWIANKITDSEFRVNSYKPLFKKFFEELTEPSSWVECD
        K+PL GV   + R  V+YN+AH+VP  +F  MM WI+ + TD++ R NS+KPL K+FF+EL  PSSWVECD
Subjt:  KYPLPGVYAPMGRPRVSYNIAHDVPSGVFDGMMSWIANKITDSEFRVNSYKPLFKKFFEELTEPSSWVECD

TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGAGAGCGAGATGAGCGAGATGAGCAATATGATGGAGGAAGATACTAGCAATAGTTTAGAAAGTGAAGAGGATGAGCATGATAATGATTCTGACGATGGTGGAGA
CGATCAGGATGATCGGAAGGGTCAAGATGACCGGGAGGATCGGGAGAACCGGGATGATCGGGAGGACCGAGATGACCGGGATGATGGAGATGCTCAATTTGATAGTGATG
ATCGGGTTCATGGGGATGATGGAGTTGATTGTGATGATCGGGATGATGTGGATGACGTGAACACATCTGAGCCCACGAATTCGAGAATGCCAACGACTGAGCCCAGTGGA
TTCGACGCTACACCTAATGTATACTCCTACCTGCGGAGTATCGACAGTTCTGTGTCGAGGTTGGAGGGTCGTGTATTGAAGGTCGATGATGAACTTGGTGTCATGAAGGC
ACAACTGACGACCATTACGTCATTATTACAGTCGTTGATTAAGGTTTGTCTTTCTTTCTTTCTTTTATTTGTTTGCTTCAAGTACAGATCCCTCTATGATGTCGGGTTTG
AGGAGGTCACCCACACCACTCCGAGACCCAGATTCGAGGTCACCCTCTCCACCCCGACACACGGATTCGAGGAGGTCACCCACACCACCCCGACCCACGGATTCGAGGAG
GTCACCCAAACCACCCTGAGACACGAATTCGAGGTCGCCCATCCCACCACCACCTCGACCTCATTCTTCACCCCGAGAAATGGATTCGCGGAGGTCACCTTCCCCACCTC
CACATCTACTTCCTTCCCCACCCCCACCTCCACCTTCTTCCCCACCCCCCTCCTTCTTCACTCCCACCTTTACCTCCTTCTCCACCACAGTTTACCGAGGCCAGTACGTG
GCGATCGTCGAAAAGGTGGCCGTAAAAGGAAGGGTGTTGACAAGTACACTCCAACGGACACACGACCAAAGAAAACGATGAAACATGAGACAGCATCAGCGCAATCGTTC
AAGTACCCTCTACCGGGAGTTTATGCACCGATGGGTAGACCAAGGGTCAGCTACAATATAGCACACGACGTTCCATCCGGCGTATTCGACGGTATGATGTCATGGATTGC
TAATAAGATTACGGATAGTGAGTTTAGAGTTAATTCATATAAACCATTGTTCAAGAAATTCTTCGAGGAGCTGACTGAACCGAGTTCATGGGTTGAGTGCGATCCGATAA
AATTCATGTTCCGGTTCATTGCCGACAAGTTTCACAGTCGTCCGAAAATGTGCATGAATAAGTTCACCGTCATACCAACGGGGATAGTG
mRNA sequenceShow/hide mRNA sequence
ATGAGCGAGAGCGAGATGAGCGAGATGAGCAATATGATGGAGGAAGATACTAGCAATAGTTTAGAAAGTGAAGAGGATGAGCATGATAATGATTCTGACGATGGTGGAGA
CGATCAGGATGATCGGAAGGGTCAAGATGACCGGGAGGATCGGGAGAACCGGGATGATCGGGAGGACCGAGATGACCGGGATGATGGAGATGCTCAATTTGATAGTGATG
ATCGGGTTCATGGGGATGATGGAGTTGATTGTGATGATCGGGATGATGTGGATGACGTGAACACATCTGAGCCCACGAATTCGAGAATGCCAACGACTGAGCCCAGTGGA
TTCGACGCTACACCTAATGTATACTCCTACCTGCGGAGTATCGACAGTTCTGTGTCGAGGTTGGAGGGTCGTGTATTGAAGGTCGATGATGAACTTGGTGTCATGAAGGC
ACAACTGACGACCATTACGTCATTATTACAGTCGTTGATTAAGGTTTGTCTTTCTTTCTTTCTTTTATTTGTTTGCTTCAAGTACAGATCCCTCTATGATGTCGGGTTTG
AGGAGGTCACCCACACCACTCCGAGACCCAGATTCGAGGTCACCCTCTCCACCCCGACACACGGATTCGAGGAGGTCACCCACACCACCCCGACCCACGGATTCGAGGAG
GTCACCCAAACCACCCTGAGACACGAATTCGAGGTCGCCCATCCCACCACCACCTCGACCTCATTCTTCACCCCGAGAAATGGATTCGCGGAGGTCACCTTCCCCACCTC
CACATCTACTTCCTTCCCCACCCCCACCTCCACCTTCTTCCCCACCCCCCTCCTTCTTCACTCCCACCTTTACCTCCTTCTCCACCACAGTTTACCGAGGCCAGTACGTG
GCGATCGTCGAAAAGGTGGCCGTAAAAGGAAGGGTGTTGACAAGTACACTCCAACGGACACACGACCAAAGAAAACGATGAAACATGAGACAGCATCAGCGCAATCGTTC
AAGTACCCTCTACCGGGAGTTTATGCACCGATGGGTAGACCAAGGGTCAGCTACAATATAGCACACGACGTTCCATCCGGCGTATTCGACGGTATGATGTCATGGATTGC
TAATAAGATTACGGATAGTGAGTTTAGAGTTAATTCATATAAACCATTGTTCAAGAAATTCTTCGAGGAGCTGACTGAACCGAGTTCATGGGTTGAGTGCGATCCGATAA
AATTCATGTTCCGGTTCATTGCCGACAAGTTTCACAGTCGTCCGAAAATGTGCATGAATAAGTTCACCGTCATACCAACGGGGATAGTG
Protein sequenceShow/hide protein sequence
MSESEMSEMSNMMEEDTSNSLESEEDEHDNDSDDGGDDQDDRKGQDDREDRENRDDREDRDDRDDGDAQFDSDDRVHGDDGVDCDDRDDVDDVNTSEPTNSRMPTTEPSG
FDATPNVYSYLRSIDSSVSRLEGRVLKVDDELGVMKAQLTTITSLLQSLIKVCLSFFLLFVCFKYRSLYDVGFEEVTHTTPRPRFEVTLSTPTHGFEEVTHTTPTHGFEE
VTQTTLRHEFEVAHPTTTSTSFFTPRNGFAEVTFPTSTSTSFPTPTSTFFPTPLLLHSHLYLLLHHSLPRPVRGDRRKGGRKRKGVDKYTPTDTRPKKTMKHETASAQSF
KYPLPGVYAPMGRPRVSYNIAHDVPSGVFDGMMSWIANKITDSEFRVNSYKPLFKKFFEELTEPSSWVECDPIKFMFRFIADKFHSRPKMCMNKFTVIPTGIV