; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G008210 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G008210
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionNmrA domain-containing protein
Genome locationchr10:11322226..11324993
RNA-Seq ExpressionLsi10G008210
SyntenyLsi10G008210
Gene Ontology termsGO:0009807 - lignan biosynthetic process (biological process)
GO:0016491 - oxidoreductase activity (molecular function)
InterPro domainsIPR008030 - NmrA-like domain
IPR036291 - NAD(P)-binding domain superfamily
IPR044256 - High chlorophyll fluorescence 244-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010821.1 putative protein ycf39, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-5288.46Show/hide
Query:  MALRLPTQLATPGNL---HRHAFSSRRSFAASDALFSTFPS----FASSSSGRSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRA
        MALRLPTQLA PG     HR AFSSRR+ AA+DALFSTFPS     ASSSSGRSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRA
Subjt:  MALRLPTQLATPGNL---HRHAFSSRRSFAASDALFSTFPS----FASSSSGRSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRA

Query:  LDEGYEVRCLVRPRPAPADFLRDWGAIVVN
        LDEGYEVRCLVRPRPAPADFLRDWGAIVVN
Subjt:  LDEGYEVRCLVRPRPAPADFLRDWGAIVVN

XP_004139948.1 protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 244, chloroplastic [Cucumis sativus]9.4e-5591.87Show/hide
Query:  MALRLPTQLATPGNLHRHAFSSRRSFAASDALFSTFPSFASSSSGRSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEV
        MALRLPTQL TP NLHR AFSSRRSFA SD LFS+FPSF SSSSGRSC LP+VRC AQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEV
Subjt:  MALRLPTQLATPGNLHRHAFSSRRSFAASDALFSTFPSFASSSSGRSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEV

Query:  RCLVRPRPAPADFLRDWGAIVVN
        RCLVRPRPAPADFLRDWGAIVVN
Subjt:  RCLVRPRPAPADFLRDWGAIVVN

XP_008448311.1 PREDICTED: uncharacterized protein ycf39 isoform X1 [Cucumis melo]4.7e-5492.74Show/hide
Query:  MALRLPTQLATPGNLHRHAFSSRRSFAASDALFSTFPSFASSSSG-RSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYE
        MALRLPTQLATP NLHR AFSSRRSFA SD LFS+FPSF SSSS  RSC LPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYE
Subjt:  MALRLPTQLATPGNLHRHAFSSRRSFAASDALFSTFPSFASSSSG-RSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYE

Query:  VRCLVRPRPAPADFLRDWGAIVVN
        VRCLVRPRPAPADFLRDWGAIVVN
Subjt:  VRCLVRPRPAPADFLRDWGAIVVN

XP_008448312.1 PREDICTED: uncharacterized protein ycf39 isoform X2 [Cucumis melo]4.7e-5492.74Show/hide
Query:  MALRLPTQLATPGNLHRHAFSSRRSFAASDALFSTFPSFASSSSG-RSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYE
        MALRLPTQLATP NLHR AFSSRRSFA SD LFS+FPSF SSSS  RSC LPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYE
Subjt:  MALRLPTQLATPGNLHRHAFSSRRSFAASDALFSTFPSFASSSSG-RSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYE

Query:  VRCLVRPRPAPADFLRDWGAIVVN
        VRCLVRPRPAPADFLRDWGAIVVN
Subjt:  VRCLVRPRPAPADFLRDWGAIVVN

XP_038902847.1 protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 244, chloroplastic [Benincasa hispida]1.3e-5693.7Show/hide
Query:  MALRLPTQLATPGNLHRHAFSSRRSFAASDALFSTFPSF----ASSSSGRSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDE
        MALRLPTQLATPG LHR AFSSRR+FAASDALFS+FPSF    ASSSSGRSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDE
Subjt:  MALRLPTQLATPGNLHRHAFSSRRSFAASDALFSTFPSF----ASSSSGRSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDE

Query:  GYEVRCLVRPRPAPADFLRDWGAIVVN
        GYEVRCLVRPRPAPADFLRDWGAIVVN
Subjt:  GYEVRCLVRPRPAPADFLRDWGAIVVN

TrEMBL top hitse value%identityAlignment
A0A0A0KE85 NmrA domain-containing protein4.6e-5591.87Show/hide
Query:  MALRLPTQLATPGNLHRHAFSSRRSFAASDALFSTFPSFASSSSGRSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEV
        MALRLPTQL TP NLHR AFSSRRSFA SD LFS+FPSF SSSSGRSC LP+VRC AQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEV
Subjt:  MALRLPTQLATPGNLHRHAFSSRRSFAASDALFSTFPSFASSSSGRSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEV

Query:  RCLVRPRPAPADFLRDWGAIVVN
        RCLVRPRPAPADFLRDWGAIVVN
Subjt:  RCLVRPRPAPADFLRDWGAIVVN

A0A1S3BJE0 uncharacterized protein ycf39 isoform X12.3e-5492.74Show/hide
Query:  MALRLPTQLATPGNLHRHAFSSRRSFAASDALFSTFPSFASSSSG-RSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYE
        MALRLPTQLATP NLHR AFSSRRSFA SD LFS+FPSF SSSS  RSC LPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYE
Subjt:  MALRLPTQLATPGNLHRHAFSSRRSFAASDALFSTFPSFASSSSG-RSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYE

Query:  VRCLVRPRPAPADFLRDWGAIVVN
        VRCLVRPRPAPADFLRDWGAIVVN
Subjt:  VRCLVRPRPAPADFLRDWGAIVVN

A0A1S3BK11 uncharacterized protein ycf39 isoform X22.3e-5492.74Show/hide
Query:  MALRLPTQLATPGNLHRHAFSSRRSFAASDALFSTFPSFASSSSG-RSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYE
        MALRLPTQLATP NLHR AFSSRRSFA SD LFS+FPSF SSSS  RSC LPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYE
Subjt:  MALRLPTQLATPGNLHRHAFSSRRSFAASDALFSTFPSFASSSSG-RSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYE

Query:  VRCLVRPRPAPADFLRDWGAIVVN
        VRCLVRPRPAPADFLRDWGAIVVN
Subjt:  VRCLVRPRPAPADFLRDWGAIVVN

A0A6J1CI58 uncharacterized protein ycf391.1e-5186.92Show/hide
Query:  MALRLPTQLATPGNLHRH---AFSSRRSFAASDALFSTFPSFA----SSSSGRSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRA
        MALRLPTQLA PG LHR     FSSRR+FAASDAL S+FPS A    SSSSGRSCLLPVV+CTAQ TGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRA
Subjt:  MALRLPTQLATPGNLHRH---AFSSRRSFAASDALFSTFPSFA----SSSSGRSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRA

Query:  LDEGYEVRCLVRPRPAPADFLRDWGAIVVN
        LDEGYEVRCLVRPRPAPADFLRDWGAIVVN
Subjt:  LDEGYEVRCLVRPRPAPADFLRDWGAIVVN

A0A6J1FT87 uncharacterized protein ycf39-like1.2e-5288.46Show/hide
Query:  MALRLPTQLATPGNL---HRHAFSSRRSFAASDALFSTFPS----FASSSSGRSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRA
        MALRLPTQLA PG     HR AFSSRR+ AA+DALFSTFPS     ASSSSGRSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRA
Subjt:  MALRLPTQLATPGNL---HRHAFSSRRSFAASDALFSTFPS----FASSSSGRSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRA

Query:  LDEGYEVRCLVRPRPAPADFLRDWGAIVVN
        LDEGYEVRCLVRPRPAPADFLRDWGAIVVN
Subjt:  LDEGYEVRCLVRPRPAPADFLRDWGAIVVN

SwissProt top hitse value%identityAlignment
O65502 Protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 244, chloroplastic7.3e-3467.18Show/hide
Query:  ALRLPTQLATPGNLHRHAFSS----RRSFAASDALFSTFPSFASSSSG-----RSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRR
        +LRLP QL T GNL  H  SS    R S+  S    +T P F SSSS      RS ++PV  C+A     VNLAPGTPVRPTSILVVGATGTLGRQIVRR
Subjt:  ALRLPTQLATPGNLHRHAFSS----RRSFAASDALFSTFPSFASSSSG-----RSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRR

Query:  ALDEGYEVRCLVRPRPAPADFLRDWGAIVVN
        ALDEGY+VRCLVRPRPAPADFLRDWGA VVN
Subjt:  ALDEGYEVRCLVRPRPAPADFLRDWGAIVVN

O78472 Uncharacterized protein ycf396.6e-1151.28Show/hide
Query:  SILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAIVVNVSPGGGELRVLCTTKFSLTTDSSMRHSTD
        S+LV+GATGTLGRQIVRRALDEGYEV CLVR     A FL++WGA ++       E      TK +   D+S    +D
Subjt:  SILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAIVVNVSPGGGELRVLCTTKFSLTTDSSMRHSTD

P48279 Uncharacterized protein ycf397.8e-1245.83Show/hide
Query:  SILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAIVV--------NVSPGGGELRVLCTTKFSLTTDSSMRHSTDSPQKDLISNA
        SILV+GATGTLGRQIVR ALDEGY+VRCLVR     A FL++WGA ++        ++ P    +RV+  T  S  TD +  +  D   K  + +A
Subjt:  SILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAIVV--------NVSPGGGELRVLCTTKFSLTTDSSMRHSTDSPQKDLISNA

P51238 Uncharacterized protein ycf395.6e-1066.67Show/hide
Query:  SILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAIVV
        ++LV+GATGTLGRQIVRRALDEGY V+C+VR     A FL++WGA +V
Subjt:  SILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAIVV

Q1XDP9 Uncharacterized protein ycf397.3e-1064.58Show/hide
Query:  SILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAIVV
        ++LV+GATGTLGRQIVRRALDEGY V+C+VR     A FL++WGA ++
Subjt:  SILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAIVV

Arabidopsis top hitse value%identityAlignment
AT4G35250.1 NAD(P)-binding Rossmann-fold superfamily protein5.2e-3567.18Show/hide
Query:  ALRLPTQLATPGNLHRHAFSS----RRSFAASDALFSTFPSFASSSSG-----RSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRR
        +LRLP QL T GNL  H  SS    R S+  S    +T P F SSSS      RS ++PV  C+A     VNLAPGTPVRPTSILVVGATGTLGRQIVRR
Subjt:  ALRLPTQLATPGNLHRHAFSS----RRSFAASDALFSTFPSFASSSSG-----RSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRR

Query:  ALDEGYEVRCLVRPRPAPADFLRDWGAIVVN
        ALDEGY+VRCLVRPRPAPADFLRDWGA VVN
Subjt:  ALDEGYEVRCLVRPRPAPADFLRDWGAIVVN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCTCAGGCTGCCCACACAGCTCGCGACACCTGGCAACCTCCACCGCCACGCCTTCTCCTCCCGCCGCTCCTTTGCGGCCTCCGACGCTCTCTTCTCTACGTTTCC
TTCCTTCGCTTCATCTTCCTCCGGGAGATCTTGTTTGCTACCGGTAGTCAGATGTACGGCTCAGCAGACTGGACCTGTGAATCTGGCGCCGGGGACACCGGTTAGGCCGA
CTAGCATTCTGGTGGTTGGTGCCACTGGAACCCTTGGTAGGCAGATCGTGAGGCGCGCGTTGGACGAAGGCTACGAGGTTCGTTGTCTTGTTAGGCCTCGACCGGCTCCT
GCTGATTTTCTTCGCGATTGGGGCGCCATAGTCGTCAATGTGTCGCCGGGTGGCGGTGAACTTCGTGTCCTCTGTACGACGAAGTTTTCCTTGACGACAGACTCGAGCAT
GCGGCATTCGACCGATTCGCCACAAAAGGACCTCATATCCAACGCTCCGCCATTGACAACAATGCATGAAGGTAGGTGGGAGGCGTTGGCGACGACCAGACGAAGTTTCT
GGTGA
mRNA sequenceShow/hide mRNA sequence
AGATAGTACACGTGGAACGTATCATAATCCAATTGTGAGATCGACGTGGCAAGTTTCAGATCCTTTATTCCTGTTTTCTTCATCCTTTCTTCTCTATTGACAAACACTAC
ACACAGACCAAAAAGATTCAACCATGGCGCTCAGGCTGCCCACACAGCTCGCGACACCTGGCAACCTCCACCGCCACGCCTTCTCCTCCCGCCGCTCCTTTGCGGCCTCC
GACGCTCTCTTCTCTACGTTTCCTTCCTTCGCTTCATCTTCCTCCGGGAGATCTTGTTTGCTACCGGTAGTCAGATGTACGGCTCAGCAGACTGGACCTGTGAATCTGGC
GCCGGGGACACCGGTTAGGCCGACTAGCATTCTGGTGGTTGGTGCCACTGGAACCCTTGGTAGGCAGATCGTGAGGCGCGCGTTGGACGAAGGCTACGAGGTTCGTTGTC
TTGTTAGGCCTCGACCGGCTCCTGCTGATTTTCTTCGCGATTGGGGCGCCATAGTCGTCAATGTGTCGCCGGGTGGCGGTGAACTTCGTGTCCTCTGTACGACGAAGTTT
TCCTTGACGACAGACTCGAGCATGCGGCATTCGACCGATTCGCCACAAAAGGACCTCATATCCAACGCTCCGCCATTGACAACAATGCATGAAGGTAGGTGGGAGGCGTT
GGCGACGACCAGACGAAGTTTCTGGTGA
Protein sequenceShow/hide protein sequence
MALRLPTQLATPGNLHRHAFSSRRSFAASDALFSTFPSFASSSSGRSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAP
ADFLRDWGAIVVNVSPGGGELRVLCTTKFSLTTDSSMRHSTDSPQKDLISNAPPLTTMHEGRWEALATTRRSFW