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Lsi10G008280 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G008280
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionC2H2-like zinc finger protein
Genome locationchr10:11636937..11637452
RNA-Seq ExpressionLsi10G008280
SyntenyLsi10G008280
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN46666.2 hypothetical protein Csa_005720 [Cucumis sativus]5.0e-5066.86Show/hide
Query:  MDSPLFSFNVFPSTSTTNSTSNPRRKRTKFIKTTTSGTGKPTKQAKKAPNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQ
        MD PLFSFN   S++TTNS    RRK TKFIKTTT         A   P+NITPPCSECGKKF SWKALFGHMRCHPERQWRGINPPP FL P +A +L 
Subjt:  MDSPLFSFNVFPSTSTTNSTSNPRRKRTKFIKTTTSGTGKPTKQAKKAPNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQ

Query:  QDHDIAASLIMLANASPDAGRGTVE--------DYKPRPYSGILDLNLPPPPPPMEEIEQESSSSYSSGIVL
         DH+IA SLIML+NA PD GRGT E        ++KPR +SG+LDLNL   PPPMEEIEQESSS YSSGI L
Subjt:  QDHDIAASLIMLANASPDAGRGTVE--------DYKPRPYSGILDLNLPPPPPPMEEIEQESSSSYSSGIVL

XP_004140060.1 zinc finger protein ZAT3 [Cucumis sativus]8.8e-5568.72Show/hide
Query:  MDSPLFSFNVFPSTSTTNSTSNPRRKRTKFIKTTTSGTGKPTKQAKKAPNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQ
        MD PLFSFN   S++TTNS    RRK TKFIKTTT         A   P+NITPPCSECGKKF SWKALFGHMRCHPERQWRGINPPP FL P +A +L 
Subjt:  MDSPLFSFNVFPSTSTTNSTSNPRRKRTKFIKTTTSGTGKPTKQAKKAPNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQ

Query:  QDHDIAASLIMLANASPDAGRGTVE--------DYKPRPYSGILDLNLPPPPPPMEEIEQESSSSYSSGIVLDLRLGLN
         DH+IA SLIML+NA PD GRGT E        ++KPR +SG+LDLNL   PPPMEEIEQESSS YSSGIVLDLRLGLN
Subjt:  QDHDIAASLIMLANASPDAGRGTVE--------DYKPRPYSGILDLNLPPPPPPMEEIEQESSSSYSSGIVLDLRLGLN

XP_022944064.1 zinc finger protein ZAT3-like [Cucurbita moschata]8.2e-3754.15Show/hide
Query:  MDSP---LFSFNVFPSTSTTNST---SNPRRKRTKFIKTTTSGTGKP----TKQAKK----APNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINP
        MDSP   LF F VFP  S ++S+    N RRKRTKFIK T +    P    +K AKK    AP  IT PC+ECGK FWSWKALFGHMRCHPERQWRGINP
Subjt:  MDSP---LFSFNVFPSTSTTNST---SNPRRKRTKFIKTTTSGTGKP----TKQAKK----APNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINP

Query:  PPNFLRPFAATELQQDHDIAASLIMLANA-----SPDAGRGTVEDYKPRPY---------------SGILDLNLPPPPPPMEEIEQESSSSYSSGIVLDL
        PPNF R   +T   +DH+IAA LIMLAN        +A   T  D +                    G LDLNL   PPPME+IE E SSSY SGIVLDL
Subjt:  PPNFLRPFAATELQQDHDIAASLIMLANA-----SPDAGRGTVEDYKPRPY---------------SGILDLNLPPPPPPMEEIEQESSSSYSSGIVLDL

Query:  RLGLN
        RLG N
Subjt:  RLGLN

XP_023512246.1 zinc finger protein ZAT2-like [Cucurbita pepo subsp. pepo]2.6e-3851.82Show/hide
Query:  MDSP---LFSFNVFPSTSTTNST---SNPRRKRTKFIKTTTSGTGKP--------TKQAKK----APNNITPPCSECGKKFWSWKALFGHMRCHPERQWR
        MDSP   LF F VFP  S ++S+    N RRKRTKFI+ TT+    P        +K AKK    AP  IT PC+ECGK FWSWKALFGHMRCHPERQWR
Subjt:  MDSP---LFSFNVFPSTSTTNST---SNPRRKRTKFIKTTTSGTGKP--------TKQAKK----APNNITPPCSECGKKFWSWKALFGHMRCHPERQWR

Query:  GINPPPNFLRPFAATELQQDHDIAASLIMLANASPDA----------------------------GRGT---VEDYKPRPYSGILDLNLPPPPPPMEEIE
        GINPPPNF R   +T   +DH+IAA LIMLAN  P+A                             RG     ED       G LDLNL   PPPME+IE
Subjt:  GINPPPNFLRPFAATELQQDHDIAASLIMLANASPDA----------------------------GRGT---VEDYKPRPYSGILDLNLPPPPPPMEEIE

Query:  QESSSSYSSGIVLDLRLGLN
        + SSSSY SGIVLDLRLG N
Subjt:  QESSSSYSSGIVLDLRLGLN

XP_038880579.1 zinc finger protein ZAT3-like [Benincasa hispida]1.3e-6679.77Show/hide
Query:  SFNVFPSTSTTNSTSNPRRKRTKFIKTTTSGTGKPTKQAKK----APNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQQD
        SF+VFP T T++S+SNPRRKRTKF+KTTTS  GKPTKQ KK    A NNITPPCSECGKKFWSWKALFGHMRCHPERQWRGI PPPN LRP  A EL+QD
Subjt:  SFNVFPSTSTTNSTSNPRRKRTKFIKTTTSGTGKPTKQAKK----APNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQQD

Query:  HDIAASLIMLANASPD-AGRGTVEDYKPR-PYSGILDLNLPPPP--PPMEEIEQESSSSYSSGIVLDLRLGLN
        H+IAA LIMLANA  D +GRGT EDYK R P+SGILDLNLPPPP  PPME IE+ESSSSYSSGIVLDLRLGLN
Subjt:  HDIAASLIMLANASPD-AGRGTVEDYKPR-PYSGILDLNLPPPP--PPMEEIEQESSSSYSSGIVLDLRLGLN

TrEMBL top hitse value%identityAlignment
A0A0A0KAW8 C2H2-type domain-containing protein4.2e-5568.72Show/hide
Query:  MDSPLFSFNVFPSTSTTNSTSNPRRKRTKFIKTTTSGTGKPTKQAKKAPNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQ
        MD PLFSFN   S++TTNS    RRK TKFIKTTT         A   P+NITPPCSECGKKF SWKALFGHMRCHPERQWRGINPPP FL P +A +L 
Subjt:  MDSPLFSFNVFPSTSTTNSTSNPRRKRTKFIKTTTSGTGKPTKQAKKAPNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQ

Query:  QDHDIAASLIMLANASPDAGRGTVE--------DYKPRPYSGILDLNLPPPPPPMEEIEQESSSSYSSGIVLDLRLGLN
         DH+IA SLIML+NA PD GRGT E        ++KPR +SG+LDLNL   PPPMEEIEQESSS YSSGIVLDLRLGLN
Subjt:  QDHDIAASLIMLANASPDAGRGTVE--------DYKPRPYSGILDLNLPPPPPPMEEIEQESSSSYSSGIVLDLRLGLN

A0A6A3A3Z5 Uncharacterized protein2.9e-2755.74Show/hide
Query:  PRRKRTKFIK------TTTSGTGKPTKQAKK---APNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATE------LQQDHDIAA
        PR+KR+K IK       T+S T    K AKK   +   ITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPN  RP   T        + +H++AA
Subjt:  PRRKRTKFIK------TTTSGTGKPTKQAKK---APNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATE------LQQDHDIAA

Query:  SLIMLANASPDAGRGTVEDYKP
        SL+MLAN++P +       YKP
Subjt:  SLIMLANASPDAGRGTVEDYKP

A0A6A3C7Y7 Uncharacterized protein6.4e-2753.38Show/hide
Query:  STSTTNSTSNPRRKRTKFIK------TTTSGTGKPTKQAKKAPNN---ITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATE-----
        S++  N    PR+KR+K IK      +T S T    K AKK   N   ITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPN   P   T      
Subjt:  STSTTNSTSNPRRKRTKFIK------TTTSGTGKPTKQAKKAPNN---ITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATE-----

Query:  -LQQDHDIAASLIMLANASPDAGRGTVEDYKPR
          + DH+IAASL+MLA+ +P +       Y+PR
Subjt:  -LQQDHDIAASLIMLANASPDAGRGTVEDYKPR

A0A6J1FVY9 zinc finger protein ZAT3-like4.0e-3754.15Show/hide
Query:  MDSP---LFSFNVFPSTSTTNST---SNPRRKRTKFIKTTTSGTGKP----TKQAKK----APNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINP
        MDSP   LF F VFP  S ++S+    N RRKRTKFIK T +    P    +K AKK    AP  IT PC+ECGK FWSWKALFGHMRCHPERQWRGINP
Subjt:  MDSP---LFSFNVFPSTSTTNST---SNPRRKRTKFIKTTTSGTGKP----TKQAKK----APNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINP

Query:  PPNFLRPFAATELQQDHDIAASLIMLANA-----SPDAGRGTVEDYKPRPY---------------SGILDLNLPPPPPPMEEIEQESSSSYSSGIVLDL
        PPNF R   +T   +DH+IAA LIMLAN        +A   T  D +                    G LDLNL   PPPME+IE E SSSY SGIVLDL
Subjt:  PPNFLRPFAATELQQDHDIAASLIMLANA-----SPDAGRGTVEDYKPRPY---------------SGILDLNLPPPPPPMEEIEQESSSSYSSGIVLDL

Query:  RLGLN
        RLG N
Subjt:  RLGLN

A0A6J1J6W8 zinc finger protein ZAT3-like6.8e-3750.9Show/hide
Query:  MDSP---LFSFNVFPSTSTTNST---SNPRRKRTKFIKTTT-------SGTGKPTKQAKK----APNNITPPCSECGKKFWSWKALFGHMRCHPERQWRG
        MDSP   LF FNVFP  S ++S+    N RRKRTKFIK T        S +   +K AKK    AP  IT PC+ECGK FWSWKALFGHMRCHPERQWRG
Subjt:  MDSP---LFSFNVFPSTSTTNST---SNPRRKRTKFIKTTT-------SGTGKPTKQAKK----APNNITPPCSECGKKFWSWKALFGHMRCHPERQWRG

Query:  INPPPNFLRPFAATELQQDHDIAASLIMLANASPDA----------------------------------GRGTVEDYKPRPYSGILDLNLPPPPPPMEE
        INPPPNF R   +T   +DH+IAA LIMLAN  P+A                                   R  V++ +     G LDLNL   PPPME+
Subjt:  INPPPNFLRPFAATELQQDHDIAASLIMLANASPDA----------------------------------GRGTVEDYKPRPYSGILDLNLPPPPPPMEE

Query:  IEQESSSSYSSGIVLDLRLGLN
        IE E SSSY SGIVLDLRLG N
Subjt:  IEQESSSSYSSGIVLDLRLGLN

SwissProt top hitse value%identityAlignment
O65499 Zinc finger protein ZAT36.8e-2649.15Show/hide
Query:  NPRRKRTKFIKTTTSGT----GKPTKQAKKAPN--NITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQ--------------Q
        +P++KRTK + +++S +     KP    K  PN   IT PC+ECG+KFWSWKALFGHMRCHPERQWRGINPPPN+  P AA+  Q              +
Subjt:  NPRRKRTKFIKTTTSGT----GKPTKQAKKAPN--NITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQ--------------Q

Query:  DHDIAASLIMLANASPDA
        DH++A+ L+ML+N +P +
Subjt:  DHDIAASLIMLANASPDA

Q9SIJ0 Zinc finger protein ZAT26.6e-2135.9Show/hide
Query:  DSPLFSFNVFPSTSTTNSTSNPRRKRTKFI-----KTTTSGTGKPTKQAKKAPNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAA
        D P  S NV    +  +   NPRRKRTK        +++S   KP  Q     + I  PC+ECGK+F S KALFGHMRCHPERQWRGINPP NF R   +
Subjt:  DSPLFSFNVFPSTSTTNSTSNPRRKRTKFI-----KTTTSGTGKPTKQAKKAPNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAA

Query:  TEL---------QQDHDIAASLIMLANASPDAGRGTVED---------------------YKPRPYSG-ILDLNL---PPPPPPMEEIEQESSSS
                    +++H+IA+ L+M+AN         VE+                        +   G   + N+   PPPPPP E ++Q+   S
Subjt:  TEL---------QQDHDIAASLIMLANASPDAGRGTVED---------------------YKPRPYSG-ILDLNL---PPPPPPMEEIEQESSSS

Arabidopsis top hitse value%identityAlignment
AT2G17180.1 C2H2-like zinc finger protein4.7e-2235.9Show/hide
Query:  DSPLFSFNVFPSTSTTNSTSNPRRKRTKFI-----KTTTSGTGKPTKQAKKAPNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAA
        D P  S NV    +  +   NPRRKRTK        +++S   KP  Q     + I  PC+ECGK+F S KALFGHMRCHPERQWRGINPP NF R   +
Subjt:  DSPLFSFNVFPSTSTTNSTSNPRRKRTKFI-----KTTTSGTGKPTKQAKKAPNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAA

Query:  TEL---------QQDHDIAASLIMLANASPDAGRGTVED---------------------YKPRPYSG-ILDLNL---PPPPPPMEEIEQESSSS
                    +++H+IA+ L+M+AN         VE+                        +   G   + N+   PPPPPP E ++Q+   S
Subjt:  TEL---------QQDHDIAASLIMLANASPDAGRGTVED---------------------YKPRPYSG-ILDLNL---PPPPPPMEEIEQESSSS

AT2G26940.1 C2H2-type zinc finger family protein7.7e-0937.14Show/hide
Query:  CSECGKKFWSWKALFGHMRCHPERQWRGINPPP-------NFLRPFAATELQQDHDIAASLIMLANASPD
        C  CGK+F +  +LFGHMR HP+R W+GI PPP       ++L      E + D D+ +  +M+++   D
Subjt:  CSECGKKFWSWKALFGHMRCHPERQWRGINPPP-------NFLRPFAATELQQDHDIAASLIMLANASPD

AT4G35280.1 C2H2-like zinc finger protein4.8e-2749.15Show/hide
Query:  NPRRKRTKFIKTTTSGT----GKPTKQAKKAPN--NITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQ--------------Q
        +P++KRTK + +++S +     KP    K  PN   IT PC+ECG+KFWSWKALFGHMRCHPERQWRGINPPPN+  P AA+  Q              +
Subjt:  NPRRKRTKFIKTTTSGT----GKPTKQAKKAPN--NITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQ--------------Q

Query:  DHDIAASLIMLANASPDA
        DH++A+ L+ML+N +P +
Subjt:  DHDIAASLIMLANASPDA

AT4G35610.1 zinc finger (C2H2 type) family protein2.3e-0840.96Show/hide
Query:  STSNPRRKRTKFIKTTTSGTG---------KPTKQAKKA--PNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNF
        S S  ++K    I T T   G         KP K+AK+   P    P C  CG+ F SWKA+FGHMR H +R ++G  PPP F
Subjt:  STSNPRRKRTKFIKTTTSGTG---------KPTKQAKKA--PNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNF

AT5G56200.1 C2H2 type zinc finger transcription factor family6.6e-0861.11Show/hide
Query:  CSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFL
        C  C KKF S KAL+GHMR HP+R W+G+ PPP  L
Subjt:  CSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCTCCTCTGTTTTCTTTCAACGTTTTCCCTTCCACTTCTACTACCAATTCAACTTCAAATCCCCGCCGGAAACGGACTAAATTCATCAAAACAACTACTTCTGG
AACCGGCAAGCCGACGAAGCAGGCAAAGAAAGCTCCCAACAATATCACTCCCCCCTGTTCCGAGTGCGGCAAGAAATTCTGGTCATGGAAGGCTCTGTTCGGCCATATGC
GCTGCCACCCTGAGCGTCAATGGCGAGGAATCAATCCGCCCCCAAATTTCCTCCGCCCTTTCGCCGCCACTGAATTACAACAAGATCACGACATCGCTGCATCTTTGATC
ATGCTCGCCAATGCCTCACCGGATGCCGGCCGGGGAACGGTGGAGGACTACAAACCAAGGCCATATTCTGGAATTTTGGATTTGAATTTGCCTCCTCCTCCTCCACCAAT
GGAGGAGATTGAACAAGAATCTTCATCTTCCTATTCATCAGGGATTGTTTTGGATCTCAGATTAGGGCTTAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCTCCTCTGTTTTCTTTCAACGTTTTCCCTTCCACTTCTACTACCAATTCAACTTCAAATCCCCGCCGGAAACGGACTAAATTCATCAAAACAACTACTTCTGG
AACCGGCAAGCCGACGAAGCAGGCAAAGAAAGCTCCCAACAATATCACTCCCCCCTGTTCCGAGTGCGGCAAGAAATTCTGGTCATGGAAGGCTCTGTTCGGCCATATGC
GCTGCCACCCTGAGCGTCAATGGCGAGGAATCAATCCGCCCCCAAATTTCCTCCGCCCTTTCGCCGCCACTGAATTACAACAAGATCACGACATCGCTGCATCTTTGATC
ATGCTCGCCAATGCCTCACCGGATGCCGGCCGGGGAACGGTGGAGGACTACAAACCAAGGCCATATTCTGGAATTTTGGATTTGAATTTGCCTCCTCCTCCTCCACCAAT
GGAGGAGATTGAACAAGAATCTTCATCTTCCTATTCATCAGGGATTGTTTTGGATCTCAGATTAGGGCTTAATTAA
Protein sequenceShow/hide protein sequence
MDSPLFSFNVFPSTSTTNSTSNPRRKRTKFIKTTTSGTGKPTKQAKKAPNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQQDHDIAASLI
MLANASPDAGRGTVEDYKPRPYSGILDLNLPPPPPPMEEIEQESSSSYSSGIVLDLRLGLN