; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G008370 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G008370
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionU11/U12 small nuclear ribonucleoprotein 65 kDa protein
Genome locationchr10:11895603..11916934
RNA-Seq ExpressionLsi10G008370
SyntenyLsi10G008370
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029165.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita argyrosperma subsp. argyrosperma]1.3e-2595.52Show/hide
Query:  SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNAGAAKG
        SLF GIDEAKSALTVKLMQEGRMRGQAFVT PSVELAQHALNLVNGYVFKGKPMIIQFGRN GAAKG
Subjt:  SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNAGAAKG

XP_022152394.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Momordica charantia]4.6e-2692.65Show/hide
Query:  SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNAGAAKGN
        SLF GID+AKSALTVKLMQEGRMRGQAFVTFPS+ELAQHALNLVNGYVFKGKPMIIQFGRN GAAKG+
Subjt:  SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNAGAAKGN

XP_022972081.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita maxima]7.8e-2694.12Show/hide
Query:  SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNAGAAKGN
        SLF GIDEAKSALTVKLMQEGRMRGQAFVT PSVELAQHALNLVNGYVFKGKPMIIQFGRN GAAKG+
Subjt:  SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNAGAAKGN

XP_023540623.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita pepo subsp. pepo]7.8e-2694.12Show/hide
Query:  SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNAGAAKGN
        SLF GIDEAKSALTVKLMQEGRMRGQAFVT PSVELAQHALNLVNGYVFKGKPMIIQFGRN GAAKG+
Subjt:  SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNAGAAKGN

XP_038903908.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Benincasa hispida]6.4e-2898.53Show/hide
Query:  SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNAGAAKGN
        SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRN GAAKGN
Subjt:  SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNAGAAKGN

TrEMBL top hitse value%identityAlignment
A0A1Q3D1I9 RRM_1 domain-containing protein5.1e-2385.29Show/hide
Query:  SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNAGAAKGN
        SLFE ID AKS LTVKLMQEGRMRGQAFVTFPSVELAQHALNL NGYVFK KP+IIQFGRN  +AK N
Subjt:  SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNAGAAKGN

A0A1S3BJY8 U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X28.4e-2692.65Show/hide
Query:  SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNAGAAKGN
        SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPS+ELAQ ALNLVNGYVFKGKPMIIQFGRN GA KG+
Subjt:  SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNAGAAKGN

A0A6J1DFW4 U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X12.2e-2692.65Show/hide
Query:  SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNAGAAKGN
        SLF GID+AKSALTVKLMQEGRMRGQAFVTFPS+ELAQHALNLVNGYVFKGKPMIIQFGRN GAAKG+
Subjt:  SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNAGAAKGN

A0A6J1EXB4 U11/U12 small nuclear ribonucleoprotein 65 kDa protein2.1e-2492.54Show/hide
Query:  SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNAGAAKG
        SLF GIDEAKSALTVKLMQEGRMRGQAFVT PSVELAQ ALNLVNGYVFKGKPMIIQFGR+ GAAKG
Subjt:  SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNAGAAKG

A0A6J1I4Z6 U11/U12 small nuclear ribonucleoprotein 65 kDa protein3.8e-2694.12Show/hide
Query:  SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNAGAAKGN
        SLF GIDEAKSALTVKLMQEGRMRGQAFVT PSVELAQHALNLVNGYVFKGKPMIIQFGRN GAAKG+
Subjt:  SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNAGAAKGN

SwissProt top hitse value%identityAlignment
F1Q8J0 RNA-binding region-containing protein 33.1e-0950Show/hide
Query:  DEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNA
        +E ++   + LM+EGRM+GQAF+  PS   AQ AL   NGYV K KP+++QF R+A
Subjt:  DEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNA

Q3UZ01 RNA-binding region-containing protein 32.0e-0856.25Show/hide
Query:  VKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNA
        ++LM+EGRM+GQAFV  P+ + A  AL   NGYV  GKPM++QF R+A
Subjt:  VKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNA

Q5R6C7 RNA-binding region-containing protein 31.5e-0846.27Show/hide
Query:  SQIRRSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNA
        S+ RR +F+          ++LM+EGRM+GQAFV  P+ + A  AL   NGYV  GKPM++QF R+A
Subjt:  SQIRRSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNA

Q8RWV8 U11/U12 small nuclear ribonucleoprotein 65 kDa protein1.2e-2152.99Show/hide
Query:  PPQNLPPTIHRSTDSPLFCRRSAANPS------------------QIRRSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKG
        PPQ++          P+F   +A NPS                   I  S FE  + AKS+L V+LMQEGRMRGQAF+TFPSVE+A  ALNLVNG+VFKG
Subjt:  PPQNLPPTIHRSTDSPLFCRRSAANPS------------------QIRRSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKG

Query:  KPMIIQFGRNAGAAKGN
        KPMIIQFGR  GAAK N
Subjt:  KPMIIQFGRNAGAAKGN

Q96IZ5 RNA-binding protein 411.1e-0952.46Show/hide
Query:  SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRN
        SLF    E K       M  GRMRGQAF+TFP+ E+A  AL+LVNGY   GK ++I+FG+N
Subjt:  SLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRN

Arabidopsis top hitse value%identityAlignment
AT1G09230.1 RNA-binding (RRM/RBD/RNP motifs) family protein8.6e-2352.99Show/hide
Query:  PPQNLPPTIHRSTDSPLFCRRSAANPS------------------QIRRSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKG
        PPQ++          P+F   +A NPS                   I  S FE  + AKS+L V+LMQEGRMRGQAF+TFPSVE+A  ALNLVNG+VFKG
Subjt:  PPQNLPPTIHRSTDSPLFCRRSAANPS------------------QIRRSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKG

Query:  KPMIIQFGRNAGAAKGN
        KPMIIQFGR  GAAK N
Subjt:  KPMIIQFGRNAGAAKGN

AT1G67770.1 terminal EAR1-like 23.1e-0434.04Show/hide
Query:  NLPPTIHRSTDSPLFCRRSAANPSQIRRSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNAGAAK
        NL PT+  ST                 R +F+   E K        +E     Q FV F  V  A  AL ++NG V  GKPM+IQF R  G  K
Subjt:  NLPPTIHRSTDSPLFCRRSAANPSQIRRSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNAGAAK

AT2G30260.1 U2 small nuclear ribonucleoprotein B2.4e-0432.81Show/hide
Query:  QIRRSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGR
        +++RSL+    +    L V  ++  ++RGQA+VTF  V  A HA+  +  + F  KPM +Q+ +
Subjt:  QIRRSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCTGTTCTCTTGTTGAAAGGTTGGATGAGGGTGGAATGGCCATGATACCATATGTGCTTCCATATTTTACTGCTGCACCAACATTAGCTGTAGAATATGTCCCAGC
AACCAACAGCAGTTCCTCTCGCACTCTTCCAAGCTACTGCCAATTGGCCACTTCCACACTACTTTCCTCCCATTTACAAGCTCTCACTGGCCAATCGTCCTGCAATACCA
AGTCCATGGAGAACCATACACCGAAATATGGAACTAGTCCTAGTGTCACAGGGGTATCCGTTTGGCCCCTTTCCTGTCACTATTGGTCTTCGTCGCCGCCACAGAATCTG
CCGCCGACCATCCATAGATCCACAGATTCGCCGCTGTTTTGCCGCAGATCTGCTGCCAACCCGTCGCAGATTCGAAGATCATTATTTGAAGGTATTGATGAAGCCAAATC
TGCTCTAACTGTGAAGCTAATGCAGGAGGGAAGAATGAGGGGCCAAGCATTTGTAACATTTCCATCGGTTGAGCTTGCACAACATGCTTTAAATCTAGTAAATGGTTACG
TGTTCAAAGGCAAGCCAATGATTATCCAGTTTGGGCGCAATGCAGGAGCTGCCAAAGGGAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGACCTGTTCTCTTGTTGAAAGGTTGGATGAGGGTGGAATGGCCATGATACCATATGTGCTTCCATATTTTACTGCTGCACCAACATTAGCTGTAGAATATGTCCCAGC
AACCAACAGCAGTTCCTCTCGCACTCTTCCAAGCTACTGCCAATTGGCCACTTCCACACTACTTTCCTCCCATTTACAAGCTCTCACTGGCCAATCGTCCTGCAATACCA
AGTCCATGGAGAACCATACACCGAAATATGGAACTAGTCCTAGTGTCACAGGGGTATCCGTTTGGCCCCTTTCCTGTCACTATTGGTCTTCGTCGCCGCCACAGAATCTG
CCGCCGACCATCCATAGATCCACAGATTCGCCGCTGTTTTGCCGCAGATCTGCTGCCAACCCGTCGCAGATTCGAAGATCATTATTTGAAGGTATTGATGAAGCCAAATC
TGCTCTAACTGTGAAGCTAATGCAGGAGGGAAGAATGAGGGGCCAAGCATTTGTAACATTTCCATCGGTTGAGCTTGCACAACATGCTTTAAATCTAGTAAATGGTTACG
TGTTCAAAGGCAAGCCAATGATTATCCAGTTTGGGCGCAATGCAGGAGCTGCCAAAGGGAATTAAACGTGGCAACTAGTCAATAATTGAAGCATGTCCGGAAGGTCATTT
CAATGAATGAGGCTGTATCATTTGGCTTTCAAAAATGGAGGTAGTCGTGAAGGTCAAATTTTTCATCGGCTAATTTGGGTTGTATATATTTGTCCCAGGTAAGGGATATT
AGTTAGGTGATTGTACTAAACTATTTTTGGGTCGAGTTACTTTATATTGTTTATATCATTTATTTTAGGAGTTATGTAAAATGTAGTGTTATTTCTACTGTTGATTAAAT
ATAGTAGTTAGTTTTTATGATTTTAAAAAGAAATATTTCCAAGTCAAAAAGAGCATAGCTCAACTGGCATCAAGTATATCCTATCAATCTCCAAGTTAAAAATCAATTTT
GGTTTCTC
Protein sequenceShow/hide protein sequence
MTCSLVERLDEGGMAMIPYVLPYFTAAPTLAVEYVPATNSSSSRTLPSYCQLATSTLLSSHLQALTGQSSCNTKSMENHTPKYGTSPSVTGVSVWPLSCHYWSSSPPQNL
PPTIHRSTDSPLFCRRSAANPSQIRRSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNAGAAKGN