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Lsi10G008470 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G008470
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUPF0548 protein At2g17695
Genome locationchr10:12422952..12423252
RNA-Seq ExpressionLsi10G008470
SyntenyLsi10G008470
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025629.1 UPF0548 protein [Cucumis melo var. makuwa]3.7e-0878.05Show/hide
Query:  NEKTLIHISSKFRGATTNPSSCLQEDKGMSQEGFLLNHARI
        N     + SSKFRGAT NPSSCLQEDKG+SQEGFLLNHARI
Subjt:  NEKTLIHISSKFRGATTNPSSCLQEDKGMSQEGFLLNHARI
KAG6603877.1 UPF0548 protein, partial [Cucurbita argyrosperma subsp. sororia]3.7e-0893.94Show/hide
Query:  SSKFRGATTNPSSCLQEDKGMSQEGFLLNHARI
        SSKFRGAT NPSSCLQEDKG+SQEGFLLNHARI
Subjt:  SSKFRGATTNPSSCLQEDKGMSQEGFLLNHARI
KAG7034054.1 UPF0548 protein, partial [Cucurbita argyrosperma subsp. argyrosperma]3.7e-0893.94Show/hide
Query:  SSKFRGATTNPSSCLQEDKGMSQEGFLLNHARI
        SSKFRGAT NPSSCLQEDKG+SQEGFLLNHARI
Subjt:  SSKFRGATTNPSSCLQEDKGMSQEGFLLNHARI
XP_022950650.1 UPF0548 protein At2g17695 [Cucurbita moschata]3.7e-0893.94Show/hide
Query:  SSKFRGATTNPSSCLQEDKGMSQEGFLLNHARI
        SSKFRGAT NPSSCLQEDKG+SQEGFLLNHARI
Subjt:  SSKFRGATTNPSSCLQEDKGMSQEGFLLNHARI
XP_022979037.1 UPF0548 protein At2g17695 [Cucurbita maxima]3.7e-0893.94Show/hide
Query:  SSKFRGATTNPSSCLQEDKGMSQEGFLLNHARI
        SSKFRGAT NPSSCLQEDKG+SQEGFLLNHARI
Subjt:  SSKFRGATTNPSSCLQEDKGMSQEGFLLNHARI
TrEMBL top hitse value%identityAlignment
A0A0A0KKV8 DUF1990 domain-containing protein1.3e-0688.24Show/hide
Query:  SSKFRGATTNPSSCLQEDK-GMSQEGFLLNHARI
        +SKFRGAT NPSSCLQEDK G+SQEGFLLNHARI
Subjt:  SSKFRGATTNPSSCLQEDK-GMSQEGFLLNHARI
A0A1S3B2T0 UPF0548 protein At2g176952.3e-0893.94Show/hide
Query:  SSKFRGATTNPSSCLQEDKGMSQEGFLLNHARI
        SSKFRGAT NPSSCLQEDKG+SQEGFLLNHARI
Subjt:  SSKFRGATTNPSSCLQEDKGMSQEGFLLNHARI
A0A5A7SJY1 UPF0548 protein1.8e-0878.05Show/hide
Query:  NEKTLIHISSKFRGATTNPSSCLQEDKGMSQEGFLLNHARI
        N     + SSKFRGAT NPSSCLQEDKG+SQEGFLLNHARI
Subjt:  NEKTLIHISSKFRGATTNPSSCLQEDKGMSQEGFLLNHARI
A0A6J1GGC4 UPF0548 protein At2g176951.8e-0893.94Show/hide
Query:  SSKFRGATTNPSSCLQEDKGMSQEGFLLNHARI
        SSKFRGAT NPSSCLQEDKG+SQEGFLLNHARI
Subjt:  SSKFRGATTNPSSCLQEDKGMSQEGFLLNHARI
A0A6J1IMP9 UPF0548 protein At2g176951.8e-0893.94Show/hide
Query:  SSKFRGATTNPSSCLQEDKGMSQEGFLLNHARI
        SSKFRGAT NPSSCLQEDKG+SQEGFLLNHARI
Subjt:  SSKFRGATTNPSSCLQEDKGMSQEGFLLNHARI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCTGTGTTCGAAGGGCATTGCTGTTATGGATTAAGATGGTGTTCTTGTGTTGGTCTCACGCATCTCCTCAAGAGCAGAAGGCTTTCATTGAAAGGCAAGAACAATGAGAA
AACTCTCATACATATAAGCAGCAAGTTTAGAGGAGCTACTACCAATCCCAGTTCTTGTCTACAAGAAGACAAGGGGATGTCACAAGAAGGTTTTCTTCTCAACCATGCTC
GTATTTGGTGGGTTCTG
mRNA sequenceShow/hide mRNA sequence
TCTGTGTTCGAAGGGCATTGCTGTTATGGATTAAGATGGTGTTCTTGTGTTGGTCTCACGCATCTCCTCAAGAGCAGAAGGCTTTCATTGAAAGGCAAGAACAATGAGAA
AACTCTCATACATATAAGCAGCAAGTTTAGAGGAGCTACTACCAATCCCAGTTCTTGTCTACAAGAAGACAAGGGGATGTCACAAGAAGGTTTTCTTCTCAACCATGCTC
GTATTTGGTGGGTTCTG
Protein sequenceShow/hide protein sequence
SVFEGHCCYGLRWCSCVGLTHLLKSRRLSLKGKNNEKTLIHISSKFRGATTNPSSCLQEDKGMSQEGFLLNHARIWWVL