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Lsi10G008670 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G008670
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSYP124 protein
Genome locationchr10:12836388..12839639
RNA-Seq ExpressionLsi10G008670
SyntenyLsi10G008670
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047889.1 uncharacterized protein E6C27_scaffold133G001630 [Cucumis melo var. makuwa]4.0e-4293.41Show/hide
Query:  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGKGKKDEL
        MATLAAAAVRQARAL RVSSPQSTA LIH+RGLAGAADHHGPPK+NCWQDPMSPSKWKEEHFV+VSLSGWGLLIFGGYKFFTRGKG KDEL
Subjt:  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGKGKKDEL

KAG6570850.1 QWRF motif-containing protein 3, partial [Cucurbita argyrosperma subsp. sororia]2.1e-4392.71Show/hide
Query:  GRKSESMATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGKGKKDE
        GRKSESMATLAAAA RQARALTRVSSPQS ATLI RRGLAGAADHHGPPK+NCW DPMSPSKWKEEHFVIVSLSGWGLL FGGYKFFT GKGKKDE
Subjt:  GRKSESMATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGKGKKDE

KAG7034933.1 hypothetical protein SDJN02_01726, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-4188.54Show/hide
Query:  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGKGKKDELTLDHL
        MATLAA AVRQARALTRVSSPQST+TLI RRGLAGAADHHGPPK+NCWQDPMSPSKWKEEHFVIVSLSGWGLL +GGYKFFT GKGKKDE+ L  L
Subjt:  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGKGKKDELTLDHL

XP_022140380.1 uncharacterized protein LOC111011068 [Momordica charantia]1.4e-4295.56Show/hide
Query:  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGKGKKDE
        MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPK+NCW+DPMSPSKWKEEHFVIVSLSGWGLL FGGYKFFTRGKGKK+E
Subjt:  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGKGKKDE

XP_038900519.1 uncharacterized protein LOC120087716 [Benincasa hispida]1.4e-4296.67Show/hide
Query:  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGKGKKDE
        MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHG PK+NCWQDPMSPSKWKEEHFVIVSLSGWGLL FGGYKFFTRGKGKKDE
Subjt:  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGKGKKDE

TrEMBL top hitse value%identityAlignment
A0A1S3BJS2 uncharacterized protein LOC1034904671.3e-4192.22Show/hide
Query:  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGKGKKDE
        MATLAAAAVRQARAL RVSSPQSTA LIH+RGLAGAADHHGPPK+NCWQDPMSPSKWKEEHFV+VSLSGWG+LIFGGYKFFTRGKG KDE
Subjt:  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGKGKKDE

A0A5A7U364 Uncharacterized protein1.9e-4293.41Show/hide
Query:  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGKGKKDEL
        MATLAAAAVRQARAL RVSSPQSTA LIH+RGLAGAADHHGPPK+NCWQDPMSPSKWKEEHFV+VSLSGWGLLIFGGYKFFTRGKG KDEL
Subjt:  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGKGKKDEL

A0A6J1CEY6 uncharacterized protein LOC1110110686.6e-4395.56Show/hide
Query:  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGKGKKDE
        MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPK+NCW+DPMSPSKWKEEHFVIVSLSGWGLL FGGYKFFTRGKGKK+E
Subjt:  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGKGKKDE

A0A6J1FYP0 uncharacterized protein LOC1114489071.8e-4092.22Show/hide
Query:  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGKGKKDE
        MATLAAAA RQARALTRVSSPQS ATLI RRGLAGAADHHGPPK+NCW DPMSPSKWKEEHFVIVSLSGWGLL FGGYKFFT GKGKKDE
Subjt:  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGKGKKDE

A0A6J1I3K1 uncharacterized protein LOC1114695978.1e-4192.22Show/hide
Query:  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGKGKKDE
        MATLAA AVRQARALTR SSPQSTATLI RRGLAGAADHHGPPK+NCWQDPMSPSKWKEEHFVIVSLSGWGLL +GGYKFFT GKGKKDE
Subjt:  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGKGKKDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G20820.1 unknown protein8.6e-1950.6Show/hide
Query:  AAAVRQARALTRVSSPQ---STATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGK
        A+  R+A +L ++ S +     A++  RR LAGAADHHG  K++ W+ P +P  WKEEHFV++SLSGWGLL + GYK  T GK
Subjt:  AAAVRQARALTRVSSPQ---STATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGK

AT2G20820.2 unknown protein1.4e-0842.62Show/hide
Query:  AAAVRQARALTRVSSPQ---STATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFV
        A+  R+A +L ++ S +     A++  RR LAGAADHHG  K++ W+ P +P  WKEEH++
Subjt:  AAAVRQARALTRVSSPQ---STATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGGAAGAAAATCTGAATCCATGGCTACCTTAGCGGCTGCTGCAGTTCGTCAAGCCAGAGCCCTAACTCGAGTCTCCTCTCCTCAGTCAACCGCCACCCTTATTCA
CAGGCGCGGTCTCGCTGGCGCTGCCGACCACCATGGACCACCGAAGATTAACTGCTGGCAAGATCCAATGAGCCCATCTAAATGGAAGGAAGAGCATTTCGTGATTGTCT
CTCTATCGGGATGGGGTCTACTCATCTTTGGAGGGTACAAATTCTTTACCAGGGGCAAAGGAAAGAAGGATGAGTTAACGCTTGATCACTTGGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTGGAAGAAAATCTGAATCCATGGCTACCTTAGCGGCTGCTGCAGTTCGTCAAGCCAGAGCCCTAACTCGAGTCTCCTCTCCTCAGTCAACCGCCACCCTTATTCA
CAGGCGCGGTCTCGCTGGCGCTGCCGACCACCATGGACCACCGAAGATTAACTGCTGGCAAGATCCAATGAGCCCATCTAAATGGAAGGAAGAGCATTTCGTGATTGTCT
CTCTATCGGGATGGGGTCTACTCATCTTTGGAGGGTACAAATTCTTTACCAGGGGCAAAGGAAAGAAGGATGAGTTAACGCTTGATCACTTGGTTTGA
Protein sequenceShow/hide protein sequence
MLGRKSESMATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGKGKKDELTLDHLV