; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G008750 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G008750
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCell wall protein
Genome locationchr10:12971112..12971429
RNA-Seq ExpressionLsi10G008750
SyntenyLsi10G008750
Gene Ontology termsNA
InterPro domainsIPR034565 - Putative cell wall protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065341.1 putative cell wall protein [Cucumis melo var. makuwa]1.4e-3170.75Show/hide
Query:  MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPYEKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGGV
        +ILA+TG AV AR+F E                    SVLIPGIGRITLSPY+KG HGGGH+SSYGSNPAP+RQYIPGGDDNFIPNPG+EVPIPANIGGV
Subjt:  MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPYEKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGGV

Query:  KETSYP
        KETSYP
Subjt:  KETSYP

XP_007216421.1 putative cell wall protein [Prunus persica]1.4e-1545.87Show/hide
Query:  MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPY----------EKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFE
        ++LAITG AV  R+   +    DDKKQP+W +G+DG S LIPG+GR+ + P             GR G    S  G  P+    Y+PGGDD F+PNPG+E
Subjt:  MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPY----------EKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFE

Query:  VPIPANIGG
        VPIP N  G
Subjt:  VPIPANIGG

XP_022140620.1 putative cell wall protein [Momordica charantia]2.8e-3577.36Show/hide
Query:  MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPYEKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGGV
        +ILA+ G A  ARN RE+SSI DDKKQPQWLVGYDGVSVLIPGIGRITL PY+KG   G HA SYGSNPA   QYIPGGDDNFIPNPGFEVP PANIG V
Subjt:  MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPYEKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGGV

Query:  KETSYP
        K T +P
Subjt:  KETSYP

XP_022970746.1 putative cell wall protein [Cucurbita maxima]7.1e-3979.25Show/hide
Query:  MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPYEKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGGV
        +ILAI G AV ARN  ERSSI DDKKQP+W+ G+DGVSVLIPGIGR TLSP++KG  G G A SYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPA I GV
Subjt:  MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPYEKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGGV

Query:  KETSYP
        KET YP
Subjt:  KETSYP

XP_034206933.1 putative cell wall protein [Prunus dulcis]6.4e-1646.79Show/hide
Query:  MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPY----------EKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFE
        ++LAITG AV  R+   +    DDKKQP+W +G+DG S LIPGIGR+ + P             GR G    S  G  P+    Y+PGGDD F+PNPG+E
Subjt:  MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPY----------EKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFE

Query:  VPIPANIGG
        VPIP N  G
Subjt:  VPIPANIGG

TrEMBL top hitse value%identityAlignment
A0A0A0KCX5 Uncharacterized protein4.2e-2178.57Show/hide
Query:  VSVLIPGIGRITLSPYEKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGGVKETSYP
        VSVLIPGIGR+TLS        GGH+SSYGSNPAPRRQYIPGGD NFIPNPG+EV I A+IGGVKETSYP
Subjt:  VSVLIPGIGRITLSPYEKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGGVKETSYP

A0A5D3BC54 Putative cell wall protein6.9e-3270.75Show/hide
Query:  MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPYEKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGGV
        +ILA+TG AV AR+F E                    SVLIPGIGRITLSPY+KG HGGGH+SSYGSNPAP+RQYIPGGDDNFIPNPG+EVPIPANIGGV
Subjt:  MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPYEKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGGV

Query:  KETSYP
        KETSYP
Subjt:  KETSYP

A0A6J1CFL0 putative cell wall protein1.3e-3577.36Show/hide
Query:  MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPYEKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGGV
        +ILA+ G A  ARN RE+SSI DDKKQPQWLVGYDGVSVLIPGIGRITL PY+KG   G HA SYGSNPA   QYIPGGDDNFIPNPGFEVP PANIG V
Subjt:  MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPYEKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGGV

Query:  KETSYP
        K T +P
Subjt:  KETSYP

A0A6J1I1F6 putative cell wall protein3.4e-3979.25Show/hide
Query:  MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPYEKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGGV
        +ILAI G AV ARN  ERSSI DDKKQP+W+ G+DGVSVLIPGIGR TLSP++KG  G G A SYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPA I GV
Subjt:  MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPYEKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGGV

Query:  KETSYP
        KET YP
Subjt:  KETSYP

M5XEW2 Uncharacterized protein6.9e-1645.87Show/hide
Query:  MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPY----------EKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFE
        ++LAITG AV  R+   +    DDKKQP+W +G+DG S LIPG+GR+ + P             GR G    S  G  P+    Y+PGGDD F+PNPG+E
Subjt:  MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPY----------EKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFE

Query:  VPIPANIGG
        VPIP N  G
Subjt:  VPIPANIGG

SwissProt top hitse value%identityAlignment
P47925 Putative cell wall protein7.4e-0733.96Show/hide
Query:  MILAITGAVEARNFRERSSIDDDKKQPQWLVGYD-GVSVLIPGIGRITLSPYEKGRH------------GGGHASSYGSNPAPRRQYIPGGDDNFIPNPG
        ++L     V       +S    D K P +LV  +   ++LIPG+GR  L P  K               GGG  S  G   A     +PGGDD  +PNPG
Subjt:  MILAITGAVEARNFRERSSIDDDKKQPQWLVGYD-GVSVLIPGIGRITLSPYEKGRH------------GGGHASSYGSNPAPRRQYIPGGDDNFIPNPG

Query:  FEVPIP
        FE P P
Subjt:  FEVPIP

Arabidopsis top hitse value%identityAlignment
AT2G20870.1 cell wall protein precursor, putative5.3e-0833.96Show/hide
Query:  MILAITGAVEARNFRERSSIDDDKKQPQWLVGYD-GVSVLIPGIGRITLSPYEKGRH------------GGGHASSYGSNPAPRRQYIPGGDDNFIPNPG
        ++L     V       +S    D K P +LV  +   ++LIPG+GR  L P  K               GGG  S  G   A     +PGGDD  +PNPG
Subjt:  MILAITGAVEARNFRERSSIDDDKKQPQWLVGYD-GVSVLIPGIGRITLSPYEKGRH------------GGGHASSYGSNPAPRRQYIPGGDDNFIPNPG

Query:  FEVPIP
        FE P P
Subjt:  FEVPIP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCCTCGCAATAACTGGAGCAGTTGAAGCTCGCAATTTTCGTGAAAGGTCGAGCATTGATGATGATAAGAAACAGCCTCAGTGGCTAGTTGGATATGATGGGGTCAG
TGTGCTCATTCCCGGCATTGGACGCATCACATTGTCGCCATATGAAAAAGGCAGACATGGAGGAGGACATGCGAGTTCATATGGCAGTAACCCAGCTCCAAGACGTCAAT
ATATTCCAGGTGGGGATGACAATTTCATTCCAAATCCTGGATTTGAGGTGCCAATCCCTGCCAATATTGGTGGTGTTAAAGAAACATCCTATCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCCTCGCAATAACTGGAGCAGTTGAAGCTCGCAATTTTCGTGAAAGGTCGAGCATTGATGATGATAAGAAACAGCCTCAGTGGCTAGTTGGATATGATGGGGTCAG
TGTGCTCATTCCCGGCATTGGACGCATCACATTGTCGCCATATGAAAAAGGCAGACATGGAGGAGGACATGCGAGTTCATATGGCAGTAACCCAGCTCCAAGACGTCAAT
ATATTCCAGGTGGGGATGACAATTTCATTCCAAATCCTGGATTTGAGGTGCCAATCCCTGCCAATATTGGTGGTGTTAAAGAAACATCCTATCCTTGA
Protein sequenceShow/hide protein sequence
MILAITGAVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPYEKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGGVKETSYP