; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G009020 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G009020
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontranscription factor bHLH162-like
Genome locationchr10:13474047..13474632
RNA-Seq ExpressionLsi10G009020
SyntenyLsi10G009020
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:2000112 - regulation of cellular macromolecule biosynthetic process (biological process)
GO:0090575 - RNA polymerase II transcription factor complex (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR015660 - Achaete-scute transcription factor-related
IPR036638 - Helix-loop-helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062040.1 transcription factor bHLH36-like isoform X1 [Cucumis melo var. makuwa]1.5e-4273.05Show/hide
Query:  MKSLYSKLNSLLPTHHSN-ELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSP-----SMSQNRTAPELKIKEMGSAVEVVLTTG
        MKSLYSKLNSLLP+HHSN +LP +V+DQI+ AI YIKSLE+KLK DEEKKER+LRRSK+ SSS+++S      S+SQNR  PELKIKEMGSAVEVVL TG
Subjt:  MKSLYSKLNSLLPTHHSN-ELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSP-----SMSQNRTAPELKIKEMGSAVEVVLTTG

Query:  LEDRSIFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV
        LEDRS+FYE + I  EERAEIINVSYS+L++TI+YSLHAE+
Subjt:  LEDRSIFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV

XP_022944108.1 transcription factor bHLH162-like [Cucurbita moschata]1.1e-4377.21Show/hide
Query:  MKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTTGL-EDRS
        MKSLYSKLNSLLPTHHSNELPLSV DQI+EAIKYIKSLE+KLK DEEKKERF RRS   SSSS  +P+ S+NR  PEL+IKEMGSAVEVVL+TGL EDR 
Subjt:  MKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTTGL-EDRS

Query:  IFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV
        IFYEI+ IF EERAEI+NVSYSV+ N+++YSL+AE+
Subjt:  IFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV

XP_023512282.1 transcription factor bHLH162-like [Cucurbita pepo subsp. pepo]5.6e-4577.04Show/hide
Query:  MKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTTGLEDRSI
        MK LYSKLNSLLPTHHSNELPLSVSDQI+EAIKYIKSLE+KLK DEEKKERF RRS   SSSS  +P+ ++NR  PEL+IKEMGS VEVVL+TGLEDR I
Subjt:  MKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTTGLEDRSI

Query:  FYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV
        FYEI+ IF EERAEI+NVSYSV+ N+++YSLHAE+
Subjt:  FYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV

XP_038902350.1 transcription factor bHLH162-like [Benincasa hispida]3.9e-4678.47Show/hide
Query:  MEKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMP-SSSSSTSPSMSQNRTAPELKIKEMGSAVEVVL
        +EKNRRNKMKSLYS LNSLLPT HSN LPL+VS+QI+E IK IKSLE+KLK DEEKKER LR+SKM  SS S T+ S +QNR  PELKIKEMGSAVEVVL
Subjt:  MEKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMP-SSSSSTSPSMSQNRTAPELKIKEMGSAVEVVL

Query:  TTGLEDRSIFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV
        TTGLEDRSIFYEI+ IF EER EIINVSYS LE+TI+YSLHAE+
Subjt:  TTGLEDRSIFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV

XP_038902351.1 transcription factor bHLH162-like [Benincasa hispida]2.6e-5079.86Show/hide
Query:  MEKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSS-TSPSMSQNRTAPELKIKEMGSAVEVVL
        MEKNRRNKMKSLY+ LNSLLP  HSNELPL+V DQID+AIKYIKSLE+ LK DEEKKER LR+SK+ SSSSS T+ SMS NR  PELKIKEMGSAVEVVL
Subjt:  MEKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSS-TSPSMSQNRTAPELKIKEMGSAVEVVL

Query:  TTGLEDRSIFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV
        TTGLEDRSIFYEI+ IF EER EIIN+SYS+LENTI+YSLH E+
Subjt:  TTGLEDRSIFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV

TrEMBL top hitse value%identityAlignment
A0A1S4DX24 transcription factor bHLH36-like isoform X17.4e-4373.05Show/hide
Query:  MKSLYSKLNSLLPTHHSN-ELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSP-----SMSQNRTAPELKIKEMGSAVEVVLTTG
        MKSLYSKLNSLLP+HHSN +LP +V+DQI+ AI YIKSLE+KLK DEEKKER+LRRSK+ SSS+++S      S+SQNR  PELKIKEMGSAVEVVL TG
Subjt:  MKSLYSKLNSLLPTHHSN-ELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSP-----SMSQNRTAPELKIKEMGSAVEVVLTTG

Query:  LEDRSIFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV
        LEDRS+FYE + I  EERAEIINVSYS+L++TI+YSLHAE+
Subjt:  LEDRSIFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV

A0A5A7V416 Transcription factor bHLH36-like isoform X17.4e-4373.05Show/hide
Query:  MKSLYSKLNSLLPTHHSN-ELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSP-----SMSQNRTAPELKIKEMGSAVEVVLTTG
        MKSLYSKLNSLLP+HHSN +LP +V+DQI+ AI YIKSLE+KLK DEEKKER+LRRSK+ SSS+++S      S+SQNR  PELKIKEMGSAVEVVL TG
Subjt:  MKSLYSKLNSLLPTHHSN-ELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSP-----SMSQNRTAPELKIKEMGSAVEVVLTTG

Query:  LEDRSIFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV
        LEDRS+FYE + I  EERAEIINVSYS+L++TI+YSLHAE+
Subjt:  LEDRSIFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV

A0A5D3BZ69 Transcription factor bHLH36-like isoform X17.4e-4373.05Show/hide
Query:  MKSLYSKLNSLLPTHHSN-ELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSP-----SMSQNRTAPELKIKEMGSAVEVVLTTG
        MKSLYSKLNSLLP+HHSN +LP +V+DQI+ AI YIKSLE+KLK DEEKKER+LRRSK+ SSS+++S      S+SQNR  PELKIKEMGSAVEVVL TG
Subjt:  MKSLYSKLNSLLPTHHSN-ELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSP-----SMSQNRTAPELKIKEMGSAVEVVLTTG

Query:  LEDRSIFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV
        LEDRS+FYE + I  EERAEIINVSYS+L++TI+YSLHAE+
Subjt:  LEDRSIFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV

A0A6J1FXP8 transcription factor bHLH162-like5.1e-4477.21Show/hide
Query:  MKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTTGL-EDRS
        MKSLYSKLNSLLPTHHSNELPLSV DQI+EAIKYIKSLE+KLK DEEKKERF RRS   SSSS  +P+ S+NR  PEL+IKEMGSAVEVVL+TGL EDR 
Subjt:  MKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTTGL-EDRS

Query:  IFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV
        IFYEI+ IF EERAEI+NVSYSV+ N+++YSL+AE+
Subjt:  IFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV

A0A6J1JF05 transcription factor bHLH162-like1.3e-4274.26Show/hide
Query:  MKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTTGL-EDRS
        MKSLYSKLNSLLPTHHSNE+PLSVSDQI+EAIKYIKSLE+KLK +EEKKERF R+S   SSS  T+P+ S+NR  PEL+IKE+GSAVEVVL+ GL EDR 
Subjt:  MKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTTGL-EDRS

Query:  IFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV
        IFYEI+ IF +ERAEI+NVSYSV+ N+++YSLHAE+
Subjt:  IFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV

SwissProt top hitse value%identityAlignment
F4JIJ7 Transcription factor bHLH1622.5e-1940.67Show/hide
Query:  MEKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFL------RRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSA
        +EKNRR +MKSLYS+L SLLP HHS+  PL++ DQ+DEA  YIK L++ ++   E+K   +      + + + SSS S+S  +S  R  P+++I+E GS 
Subjt:  MEKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFL------RRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSA

Query:  VEVVLTTGLEDRSIFYEIVGIFQEE-RAEIINVSYSVLENTIVYSLHAEV
          + L T LE + +F EI+ +  EE  AEI +  YS++++ + ++LH +V
Subjt:  VEVVLTTGLEDRSIFYEIVGIFQEE-RAEIINVSYSVLENTIVYSLHAEV

Q9FLI1 Transcription factor bHLH364.5e-0529.05Show/hide
Query:  EKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFL---RRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVV
        E+ RR +M SLY+ L SLLP H       S SDQ++EA+ YIK L+ K+K    +++  +   R S + SS+      +        + +++    VE++
Subjt:  EKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFL---RRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVV

Query:  LTT---GLEDRSIFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV
        L++   G + R  F  ++ +  E    ++N   S++++ +VY++ AEV
Subjt:  LTT---GLEDRSIFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV

Q9XIJ1 Transcription factor bHLH1685.0e-0428.28Show/hide
Query:  EKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTT
        EK RR +MK L+    S+L +H S    L V   ID+A+ Y+  L+ K+    E K R L       S  S+          P+L I+ + S +E+ L  
Subjt:  EKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTT

Query:  GLEDRSI-FYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEVYI
         L  + +  +++V +F+EE A++++ +   L +   Y++ A+  I
Subjt:  GLEDRSI-FYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEVYI

Arabidopsis top hitse value%identityAlignment
AT1G10585.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein3.9e-0428.28Show/hide
Query:  EKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTT
        EK+RR +MK L+    S+L +H S    L V   ID+A  Y+  L+  +   +EKK   L+                 +   P+L I+   S +E+ L  
Subjt:  EKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTT

Query:  GLE-DRSIFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEVYI
         L   R + +E+V IF+EE A++++ +   L +   Y++ A+  I
Subjt:  GLE-DRSIFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEVYI

AT1G10586.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein3.6e-0528.28Show/hide
Query:  EKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTT
        EK RR +MK L+    S+L +H S    L V   ID+A+ Y+  L+ K+    E K R L       S  S+          P+L I+ + S +E+ L  
Subjt:  EKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTT

Query:  GLEDRSI-FYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEVYI
         L  + +  +++V +F+EE A++++ +   L +   Y++ A+  I
Subjt:  GLEDRSI-FYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEVYI

AT4G20970.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.8e-2040.67Show/hide
Query:  MEKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFL------RRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSA
        +EKNRR +MKSLYS+L SLLP HHS+  PL++ DQ+DEA  YIK L++ ++   E+K   +      + + + SSS S+S  +S  R  P+++I+E GS 
Subjt:  MEKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFL------RRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSA

Query:  VEVVLTTGLEDRSIFYEIVGIFQEE-RAEIINVSYSVLENTIVYSLHAEV
          + L T LE + +F EI+ +  EE  AEI +  YS++++ + ++LH +V
Subjt:  VEVVLTTGLEDRSIFYEIVGIFQEE-RAEIINVSYSVLENTIVYSLHAEV

AT5G51780.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein3.2e-0629.05Show/hide
Query:  EKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFL---RRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVV
        E+ RR +M SLY+ L SLLP H       S SDQ++EA+ YIK L+ K+K    +++  +   R S + SS+      +        + +++    VE++
Subjt:  EKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFL---RRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVV

Query:  LTT---GLEDRSIFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV
        L++   G + R  F  ++ +  E    ++N   S++++ +VY++ AEV
Subjt:  LTT---GLEDRSIFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAAAATCGCAGAAACAAGATGAAATCACTTTACTCAAAATTGAATTCCCTCCTCCCAACCCATCACTCAAATGAGTTGCCACTATCAGTGTCAGATCAGATAGA
TGAAGCAATAAAGTACATTAAATCACTGGAGATGAAGTTGAAGAACGATGAGGAGAAGAAGGAGAGATTTCTGAGGAGATCGAAAATGCCGTCGTCGTCGTCGTCCACCT
CACCATCGATGAGCCAGAATAGGACTGCTCCTGAATTGAAAATCAAAGAGATGGGTTCGGCCGTGGAAGTTGTTTTAACGACTGGGTTGGAGGATCGGTCGATATTTTAT
GAGATTGTTGGTATTTTTCAGGAGGAGCGAGCTGAGATCATCAATGTCAGTTACTCCGTTCTCGAAAACACCATCGTATATTCGCTCCATGCTGAGGTATATATTCGATG
TCCATATATAAGAAATGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAAAATCGCAGAAACAAGATGAAATCACTTTACTCAAAATTGAATTCCCTCCTCCCAACCCATCACTCAAATGAGTTGCCACTATCAGTGTCAGATCAGATAGA
TGAAGCAATAAAGTACATTAAATCACTGGAGATGAAGTTGAAGAACGATGAGGAGAAGAAGGAGAGATTTCTGAGGAGATCGAAAATGCCGTCGTCGTCGTCGTCCACCT
CACCATCGATGAGCCAGAATAGGACTGCTCCTGAATTGAAAATCAAAGAGATGGGTTCGGCCGTGGAAGTTGTTTTAACGACTGGGTTGGAGGATCGGTCGATATTTTAT
GAGATTGTTGGTATTTTTCAGGAGGAGCGAGCTGAGATCATCAATGTCAGTTACTCCGTTCTCGAAAACACCATCGTATATTCGCTCCATGCTGAGGTATATATTCGATG
TCCATATATAAGAAATGTGTGA
Protein sequenceShow/hide protein sequence
MEKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTTGLEDRSIFY
EIVGIFQEERAEIINVSYSVLENTIVYSLHAEVYIRCPYIRNV