CuGenDBv2

Gene ID	Lsi10G009140
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	NusB domain-containing protein
Genome location	chr10:13623254..13626653
RNA-Seq Expression	Lsi10G009140
Synteny	Lsi10G009140
Gene Ontology terms	GO:0006353 - DNA-templated transcription, termination (biological process)
InterPro domains	IPR011605 - NusB antitermination factor

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040119.1 NusB/RsmB/TIM44 [Cucumis melo var. makuwa]

2.6e-60

57.85

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Query:  LKMPNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFS
        +++PNFHFS HISG+C+FPF ASSIVPHV++SMP LC QASL++STSF EN V EER+SI+VSSIET PK+DKSGKFCSPRAARELAL            
Subjt:  LKMPNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFS

Query:  HKSTVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKAC
          S VYAACLEGSDPVRLFEKRLN+RR                       VTVE +EEADELLRKDE+DSTI  E      K   S    R  R    A 
Subjt:  HKSTVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKAC

Query:  LQQTDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE
        +   D        +  +  K     W  NKP GRILELCILHLAMSEITVIGTRHQIVINE
Subjt:  LQQTDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE

XP_004149639.3 uncharacterized protein LOC101216754 isoform X1 [Cucumis sativus]

5.3e-61

58.08

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Query:  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKS
        PNFHFSYHISG+C+FPF ASSIVPH++DSMP  C QASL++STSFSEN V EER+SI++SSIE  PKVDKSGKFCSPRAARELAL              S
Subjt:  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKS

Query:  TVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDSTIGYEKFGRSSRKGRNPRSPTKACLQQTDLTHV
         VYAACLEGSDPVRLFEKRLNARR                       VTVE +EEADELLRKDE+DSTI  E             +P K    +  L   
Subjt:  TVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDSTIGYEKFGRSSRKGRNPRSPTKACLQQTDLTHV

Query:  CAFYKTY------RNLKSFILWWPL--NKPVGRILELCILHLAMSEITVIGTRHQIVINE
                     R LK   +  P   NKP GRILELCILHLAMSEITVIGTRHQIVINE
Subjt:  CAFYKTY------RNLKSFILWWPL--NKPVGRILELCILHLAMSEITVIGTRHQIVINE

XP_008449897.1 PREDICTED: uncharacterized protein LOC103491638 isoform X1 [Cucumis melo]

9.9e-60

58.53

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Query:  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKS
        PNFHFS HISG+C+FPF ASSIVPHV++SMP LC QASL++STSF EN V EER+SI+VSSIET PK+DKSGKFCSPRAARELAL              S
Subjt:  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKS

Query:  TVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKACLQQ
         VYAACLEGSDPVRLFEKRLN+RR                       VTVE +EEADELLRKDE+DSTI  E      K   S    R  R    A +  
Subjt:  TVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKACLQQ

Query:  TDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE
         D        +  +  K     W  NKP GRILELCILHLAMSEITVIGTRHQIVINE
Subjt:  TDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE

XP_038901769.1 uncharacterized protein LOC120088495 isoform X1 [Benincasa hispida]

2.0e-60

59.3

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Query:  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKS
        PNFHFS HISG+CRFPFRASSIVPHV+DSM HLCPQASL++STSF EN V E+R+SI+VSS+ET PKVDKSGKFCSPRAARELAL              S
Subjt:  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKS

Query:  TVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKACLQQ
         VYAACLEGSDPVRLFEKRLN RR                       VTVE VEEADELLRKDEKDS I  E      K   S    R  R    A +  
Subjt:  TVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKACLQQ

Query:  TDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE
         D        +  +  K     W  +KP  RILELCILHLAMSEITVIGTRHQIVINE
Subjt:  TDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE

XP_038901770.1 uncharacterized protein LOC120088495 isoform X2 [Benincasa hispida]

2.0e-60

59.3

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Query:  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKS
        PNFHFS HISG+CRFPFRASSIVPHV+DSM HLCPQASL++STSF EN V E+R+SI+VSS+ET PKVDKSGKFCSPRAARELAL              S
Subjt:  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKS

Query:  TVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKACLQQ
         VYAACLEGSDPVRLFEKRLN RR                       VTVE VEEADELLRKDEKDS I  E      K   S    R  R    A +  
Subjt:  TVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKACLQQ

Query:  TDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE
         D        +  +  K     W  +KP  RILELCILHLAMSEITVIGTRHQIVINE
Subjt:  TDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWZ5 NusB domain-containing protein

2.5e-61

58.08

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Query:  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKS
        PNFHFSYHISG+C+FPF ASSIVPH++DSMP  C QASL++STSFSEN V EER+SI++SSIE  PKVDKSGKFCSPRAARELAL              S
Subjt:  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKS

Query:  TVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDSTIGYEKFGRSSRKGRNPRSPTKACLQQTDLTHV
         VYAACLEGSDPVRLFEKRLNARR                       VTVE +EEADELLRKDE+DSTI  E             +P K    +  L   
Subjt:  TVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDSTIGYEKFGRSSRKGRNPRSPTKACLQQTDLTHV

Query:  CAFYKTY------RNLKSFILWWPL--NKPVGRILELCILHLAMSEITVIGTRHQIVINE
                     R LK   +  P   NKP GRILELCILHLAMSEITVIGTRHQIVINE
Subjt:  CAFYKTY------RNLKSFILWWPL--NKPVGRILELCILHLAMSEITVIGTRHQIVINE

A0A1S3BNR2 uncharacterized protein LOC103491638 isoform X1

4.8e-60

58.53

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Query:  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKS
        PNFHFS HISG+C+FPF ASSIVPHV++SMP LC QASL++STSF EN V EER+SI+VSSIET PK+DKSGKFCSPRAARELAL              S
Subjt:  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKS

Query:  TVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKACLQQ
         VYAACLEGSDPVRLFEKRLN+RR                       VTVE +EEADELLRKDE+DSTI  E      K   S    R  R    A +  
Subjt:  TVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKACLQQ

Query:  TDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE
         D        +  +  K     W  NKP GRILELCILHLAMSEITVIGTRHQIVINE
Subjt:  TDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE

A0A1S4DXQ5 uncharacterized protein LOC103491638 isoform X2

4.8e-60

58.53

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Query:  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKS
        PNFHFS HISG+C+FPF ASSIVPHV++SMP LC QASL++STSF EN V EER+SI+VSSIET PK+DKSGKFCSPRAARELAL              S
Subjt:  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKS

Query:  TVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKACLQQ
         VYAACLEGSDPVRLFEKRLN+RR                       VTVE +EEADELLRKDE+DSTI  E      K   S    R  R    A +  
Subjt:  TVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKACLQQ

Query:  TDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE
         D        +  +  K     W  NKP GRILELCILHLAMSEITVIGTRHQIVINE
Subjt:  TDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE

A0A5A7TFT7 NusB/RsmB/TIM44

1.3e-60

57.85

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Query:  LKMPNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFS
        +++PNFHFS HISG+C+FPF ASSIVPHV++SMP LC QASL++STSF EN V EER+SI+VSSIET PK+DKSGKFCSPRAARELAL            
Subjt:  LKMPNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFS

Query:  HKSTVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKAC
          S VYAACLEGSDPVRLFEKRLN+RR                       VTVE +EEADELLRKDE+DSTI  E      K   S    R  R    A 
Subjt:  HKSTVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKAC

Query:  LQQTDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE
        +   D        +  +  K     W  NKP GRILELCILHLAMSEITVIGTRHQIVINE
Subjt:  LQQTDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE

A0A5D3DDJ4 NusB/RsmB/TIM44

4.8e-60

58.53

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Query:  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKS
        PNFHFS HISG+C+FPF ASSIVPHV++SMP LC QASL++STSF EN V EER+SI+VSSIET PK+DKSGKFCSPRAARELAL              S
Subjt:  PNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSHKS

Query:  TVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKACLQQ
         VYAACLEGSDPVRLFEKRLN+RR                       VTVE +EEADELLRKDE+DSTI  E      K   S    R  R    A +  
Subjt:  TVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEKDSTIGYE------KFGRSSRKGRNPRSPTKACLQQ

Query:  TDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE
         D        +  +  K     W  NKP GRILELCILHLAMSEITVIGTRHQIVINE
Subjt:  TDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G26370.1 antitermination NusB domain-containing protein

1.2e-23

43.01

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Query:  PKVDKSGKFCSPRAARELALLVINSNSTRLFSHKSTVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEK
        PK+DKSG+  SPRAARELAL+++              YAACLEGSDP+RLFEKR+NARR                       V  E  EE DEL+R DEK
Subjt:  PKVDKSGKFCSPRAARELALLVINSNSTRLFSHKSTVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEK

Query:  DSTIGYE------KFGRSSRKGRNPRSPTKACLQQTDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE
        +S I  E      K   S    R  +    A + + D +HV    K      S   W   + P GRILE  ILHLAMSE+ V+ TRH IVINE
Subjt:  DSTIGYE------KFGRSSRKGRNPRSPTKACLQQTDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCILHLAMSEITVIGTRHQIVINE

AT4G26370.2 antitermination NusB domain-containing protein

4.2e-16

47.62

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Query:  PKVDKSGKFCSPRAARELALLVINSNSTRLFSHKSTVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEK
        PK+DKSG+  SPRAARELAL+++              YAACLEGSDP+RLFEKR+NARR                       V  E  EE DEL+R DEK
Subjt:  PKVDKSGKFCSPRAARELALLVINSNSTRLFSHKSTVYAACLEGSDPVRLFEKRLNARR-----------------------VTVEIVEEADELLRKDEK

Query:  DSTIG
        +S IG
Subjt:  DSTIG

Sequences

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CDS sequence

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ATGGGCTTCATGATTTCTAGATATCTCCTGAAAATGCCTAATTTTCATTTCTCCTACCACATTTCTGGAGTATGTCGGTTCCCATTTCGTGCTAGTTCAATCGTCCCCCA
CGTAGAAGATTCCATGCCACACCTCTGCCCTCAAGCCTCGCTTCAGTCTTCTACTTCTTTTTCTGAAAATAGTGTGGTTGAAGAGAGGAATTCTATTGCAGTTTCTTCCA
TTGAAACAACACCAAAGGTCGACAAGAGCGGCAAATTTTGTAGCCCCAGAGCTGCTAGAGAGCTCGCTTTACTTGTAATCAATTCTAATTCTACTAGATTATTCAGTCAC
AAGTCAACTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCCGTTCGGCTCTTCGAGAAGCGGTTGAATGCCCGACGGGTTACTGTGGAAATAGTTGAAGAAGCAGATGA
GCTTTTACGTAAAGATGAAAAAGATTCTACAATTGGATACGAAAAATTTGGACGATCAAGTCGAAAAGGCAGAAATCCTCGCAGCCCCACCAAAGCTTGTCTACAGCAAA
CTGATCTTACGCATGTGTGTGCTTTTTACAAGACTTATAGAAATTTGAAAAGCTTTATACTATGGTGGCCACTGAACAAGCCAGTAGGACGGATTCTAGAGCTTTGTATT
CTCCACCTGGCCATGTCTGAAATAACGGTTATTGGAACAAGACATCAAATTGTCATTAATGAGGTAAATGTGTCTTGA

mRNA sequence

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Protein sequence

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MGFMISRYLLKMPNFHFSYHISGVCRFPFRASSIVPHVEDSMPHLCPQASLQSSTSFSENSVVEERNSIAVSSIETTPKVDKSGKFCSPRAARELALLVINSNSTRLFSH
KSTVYAACLEGSDPVRLFEKRLNARRVTVEIVEEADELLRKDEKDSTIGYEKFGRSSRKGRNPRSPTKACLQQTDLTHVCAFYKTYRNLKSFILWWPLNKPVGRILELCI
LHLAMSEITVIGTRHQIVINEVNVS

Lsi10G009140 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome