; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G009150 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G009150
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMediator of RNA polymerase II transcription subunit 21
Genome locationchr10:13626756..13631614
RNA-Seq ExpressionLsi10G009150
SyntenyLsi10G009150
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0050832 - defense response to fungus (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016592 - mediator complex (cellular component)
GO:0043078 - polar nucleus (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR021384 - Mediator complex, subunit Med21
IPR037212 - Mediator complex, subunit Med7/Med21-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149640.1 mediator of RNA polymerase II transcription subunit 21 [Cucumis sativus]1.7e-6094.89Show/hide
Query:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVN IAALAFNTFGTLQRDAPPVRLSPNYPEPPS EPTED+A IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKKA
         VGQELQKQLQAAEKEL+QVQELF+QVADNCLNLKKA
Subjt:  AVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKKA
XP_008449895.1 PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo]2.2e-6094.89Show/hide
Query:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVN IAALAFNTFGTLQRDAPPVRLSPNYPEPPS EPTEDSA IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKKA
         VGQELQKQLQAAE+EL+QVQELF+QVADNCLNLKKA
Subjt:  AVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKKA
XP_022958635.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata]2.2e-6094.89Show/hide
Query:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVN IAALAFNTFGTLQRDAPPVRLSPNYPEPP HEPTEDSAN AEQPKLMSAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKKA
        AVGQELQKQL+AAEKEL QVQELF+QVADNCLNLKKA
Subjt:  AVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKKA
XP_038893979.1 mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida]3.6e-6398.54Show/hide
Query:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKKA
        AVGQELQKQLQAAE+ELIQVQELF+QVADNCLNLKKA
Subjt:  AVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKKA
XP_038902781.1 mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida]3.0e-6297.81Show/hide
Query:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVN+IAALAFNTFGTLQRDAPPVRLSPNYPEPPS EPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKKA
        AVGQELQKQLQAAEKELIQVQELF+QVADNCLNLKKA
Subjt:  AVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKKA
TrEMBL top hitse value%identityAlignment
A0A0A0KZ00 Mediator of RNA polymerase II transcription subunit 218.0e-6194.89Show/hide
Query:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVN IAALAFNTFGTLQRDAPPVRLSPNYPEPPS EPTED+A IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKKA
         VGQELQKQLQAAEKEL+QVQELF+QVADNCLNLKKA
Subjt:  AVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKKA
A0A1S3BN38 Mediator of RNA polymerase II transcription subunit 211.0e-6094.89Show/hide
Query:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVN IAALAFNTFGTLQRDAPPVRLSPNYPEPPS EPTEDSA IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKKA
         VGQELQKQLQAAE+EL+QVQELF+QVADNCLNLKKA
Subjt:  AVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKKA
A0A5A7TEZ9 Mediator of RNA polymerase II transcription subunit 211.0e-6094.89Show/hide
Query:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVN IAALAFNTFGTLQRDAPPVRLSPNYPEPPS EPTEDSA IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKKA
         VGQELQKQLQAAE+EL+QVQELF+QVADNCLNLKKA
Subjt:  AVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKKA
A0A6J1H2M0 Mediator of RNA polymerase II transcription subunit 211.0e-6094.89Show/hide
Query:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVN IAALAFNTFGTLQRDAPPVRLSPNYPEPP HEPTEDSAN AEQPKLMSAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKKA
        AVGQELQKQL+AAEKEL QVQELF+QVADNCLNLKKA
Subjt:  AVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKKA
A0A6J1K432 Mediator of RNA polymerase II transcription subunit 211.0e-6094.89Show/hide
Query:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVN IAALAFNTFGTLQRDAPPVRLSPNYPEPP HEPTEDSAN AEQPKLMSAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKKA
        AVGQELQKQL+AAEKEL QVQELF+QVADNCLNLKKA
Subjt:  AVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKKA
SwissProt top hitse value%identityAlignment
C0LU16 Mediator of RNA polymerase II transcription subunit 211.8e-4978.83Show/hide
Query:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEP-TEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEN
        MDIISQLQEQVN IAA+ FN FGTLQRDAPPV+LSPNYPEPP+    T+D+    EQPK +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQ EN
Subjt:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEP-TEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEN

Query:  DAVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKK
        D VGQELQKQL+AAEKEL QVQELF Q ADNCLN+KK
Subjt:  DAVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKK
Q7ZTI5 Mediator of RNA polymerase II transcription subunit 216.6e-0426.76Show/hide
Query:  DIISQLQEQVNAIAALAFNTFGTLQRDAPP-----VRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQ
        D ++QLQ+ VN++A    N  G LQ+ APP     ++ + N  +P +  PTE+ A      +L +A + + AK  D L+ +LP  +     Q   + +L+
Subjt:  DIISQLQEQVNAIAALAFNTFGTLQRDAPP-----VRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQ

Query:  AENDAVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKKAA
         EN      L++ +   +  L ++Q     +A + L  +  A
Subjt:  AENDAVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKKAA
Arabidopsis top hitse value%identityAlignment
AT4G04780.1 mediator 211.3e-5078.83Show/hide
Query:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEP-TEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEN
        MDIISQLQEQVN IAA+ FN FGTLQRDAPPV+LSPNYPEPP+    T+D+    EQPK +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQ EN
Subjt:  MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEP-TEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEN

Query:  DAVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKK
        D VGQELQKQL+AAEKEL QVQELF Q ADNCLN+KK
Subjt:  DAVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKK
AT4G26370.1 antitermination NusB domain-containing protein2.7e-0885.71Show/hide
Query:  KVVDLAKRFCDGAAPRIINGCLRTFTKD
        + VDLAKRFCDG+APRIINGCLRTF KD
Subjt:  KVVDLAKRFCDGAAPRIINGCLRTFTKD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCCCGTATTATTAATGGATGCCTTAGGACCTTTACAAAGGACATCAAAGAAATTGATTCAACTCA
TGTCGGAAGCAAGAAGTCCGTGCATAACCCTGAACTTTTGAGGTGCCTCAGGACCTTTATCACAACAATAATTTCTTTCCCTTTCGCCCATGCAGGCGTGGATTTCTGTT
ATATCATAGAGTTGAGTAATGAGGTGCCTGATGTCCGGCCAGGCCCTCCCTTGTCTCCGGCAGCAGCGCGACGACCACGGACCCGCGATGAAAATCCTTGGAGATTAACA
GCGGATCGCACTCCCACTCAGTCAGTTTCTGGAAGTGGGATAAGGTTGAAGATGGACATAATTTCCCAATTGCAGGAACAAGTTAACGCAATTGCTGCTTTAGCTTTCAA
CACATTTGGGACATTACAAAGAGACGCTCCTCCAGTTCGTTTATCCCCTAATTACCCTGAACCACCGTCCCACGAACCTACAGAGGACAGTGCAAATATCGCAGAGCAGC
CCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAACAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCA
GAACTACAGGCTGAGAACGATGCTGTAGGTCAAGAACTTCAAAAGCAGCTACAAGCAGCAGAGAAAGAATTAATACAAGTTCAGGAGCTGTTCAACCAAGTGGCAGATAA
TTGCTTGAACTTGAAGAAAGCAGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGTCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCCCGTATTATTAATGGATGCCTTAGGACCTTTACAAAGGACATCAAAGAAATTGATTCAACTCA
TGTCGGAAGCAAGAAGTCCGTGCATAACCCTGAACTTTTGAGGTGCCTCAGGACCTTTATCACAACAATAATTTCTTTCCCTTTCGCCCATGCAGGCGTGGATTTCTGTT
ATATCATAGAGTTGAGTAATGAGGTGCCTGATGTCCGGCCAGGCCCTCCCTTGTCTCCGGCAGCAGCGCGACGACCACGGACCCGCGATGAAAATCCTTGGAGATTAACA
GCGGATCGCACTCCCACTCAGTCAGTTTCTGGAAGTGGGATAAGGTTGAAGATGGACATAATTTCCCAATTGCAGGAACAAGTTAACGCAATTGCTGCTTTAGCTTTCAA
CACATTTGGGACATTACAAAGAGACGCTCCTCCAGTTCGTTTATCCCCTAATTACCCTGAACCACCGTCCCACGAACCTACAGAGGACAGTGCAAATATCGCAGAGCAGC
CCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAACAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCA
GAACTACAGGCTGAGAACGATGCTGTAGGTCAAGAACTTCAAAAGCAGCTACAAGCAGCAGAGAAAGAATTAATACAAGTTCAGGAGCTGTTCAACCAAGTGGCAGATAA
TTGCTTGAACTTGAAGAAAGCAGCTTGAAAGAGTGGGGGAATTTTCCTATACTACCAATTTATGAAAGTTTTCCATATCTCCCCCATTCAATTTCTGCCACATGGCTCTT
TGTTTTTTATATTAAATATATATGTAGAAATATACGTGGCCCTACAGTTTAGGGAAGAAATATATTTCTATCAATGTCTTATTTTAAAAAGAAATAAAAAACTGTTCTCT
TCTATTTATTTATTTATGTGCTTATTACTGTTGGAGAAATTATTTTAAATGATAAAACTATAGAAATATTTTTAAATATAGCAAAATGGTACGTTTTCATATGAGGAAAC
TTTTTATTATTTTGCTATATTTTTAAATAAGGTTGTTATTTTGCCATATATGAAAACATCCCTTATTATT
Protein sequenceShow/hide protein sequence
MKVVDLAKRFCDGAAPRIINGCLRTFTKDIKEIDSTHVGSKKSVHNPELLRCLRTFITTIISFPFAHAGVDFCYIIELSNEVPDVRPGPPLSPAAARRPRTRDENPWRLT
ADRTPTQSVSGSGIRLKMDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIA
ELQAENDAVGQELQKQLQAAEKELIQVQELFNQVADNCLNLKKAA