; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G009540 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G009540
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionExonuclease domain-containing protein
Genome locationchr10:13917186..13920881
RNA-Seq ExpressionLsi10G009540
SyntenyLsi10G009540
Gene Ontology termsGO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0000175 - 3'-5'-exoribonuclease activity (molecular function)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR013520 - Exonuclease, RNase T/DNA polymerase III
IPR022894 - Oligoribonuclease
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004142177.1 oligoribonuclease [Cucumis sativus]6.4e-5982.39Show/hide
Query:  MAMEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACII
        MAM+PLVNAFS+LELD EDD + +LSTSSKDDAT S PS  GK KKEVNISGD+L GER KQGQP+  AE+YKFPLVWIDLEMTGLNVETDRILEIACII
Subjt:  MAMEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACII

Query:  TNGSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK
        TNG+LTKLVEGPDLVI+QSKECL+KMGEWCQSHHAASG  +K
Subjt:  TNGSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK

XP_008449845.1 PREDICTED: oligoribonuclease [Cucumis melo]7.1e-5882.39Show/hide
Query:  MAMEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACII
        MA +PLVNAFSVLELD EDD + +LSTSSKDDAT S  S  GKSKKEVNISGD+  GER KQGQP+  AE+YKFPLVWIDLEMTGLNVETDRILEIACII
Subjt:  MAMEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACII

Query:  TNGSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK
        TNG+LTKLVEGPDLVI+QSKECLEKMGEWCQSHHAASG  +K
Subjt:  TNGSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK

XP_022957669.1 oligoribonuclease [Cucurbita moschata]7.8e-5783.57Show/hide
Query:  MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITN
        MEP VNAFSVLELD EDD V   ST SKD+A ASS SR GKSKKEVNISGD+L G+R KQ QPD AAE+YKFPLVWIDLEMTGLNVETDRILEIACIITN
Subjt:  MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITN

Query:  GSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK
        GSLTKLVEGP LVI+QSKECLEKMGEWCQSHHAASG  +K
Subjt:  GSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK

XP_022996309.1 oligoribonuclease [Cucurbita maxima]1.4e-5884.29Show/hide
Query:  MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITN
        MEP VNAFSVLELD EDD VC  ST SKD+  ASS SR GKSKKEVNISGD+L GER KQ QPD+AAE+YKFPLVWIDLEMTGLNVETDRILEIACIITN
Subjt:  MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITN

Query:  GSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK
        GSLTKLVEGP LVI+QSKECLEKMGEWCQSHHAASG  +K
Subjt:  GSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK

XP_038902868.1 oligoribonuclease isoform X1 [Benincasa hispida]1.1e-6388.03Show/hide
Query:  MAMEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACII
        MAM+PLVNAFSVLELD EDD + +LSTSSKDDATASSPSR GKSKKEVNISGD+L GE+ KQGQPD+AAENYKFPLVWIDLEMTGL+VETDRILEIACII
Subjt:  MAMEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACII

Query:  TNGSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK
        TNGSLTKLVEGPDLVI+QSKECLEKMGEWCQSHHAASG  +K
Subjt:  TNGSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK

TrEMBL top hitse value%identityAlignment
A0A0A0KZ28 Exonuclease domain-containing protein3.1e-5982.39Show/hide
Query:  MAMEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACII
        MAM+PLVNAFS+LELD EDD + +LSTSSKDDAT S PS  GK KKEVNISGD+L GER KQGQP+  AE+YKFPLVWIDLEMTGLNVETDRILEIACII
Subjt:  MAMEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACII

Query:  TNGSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK
        TNG+LTKLVEGPDLVI+QSKECL+KMGEWCQSHHAASG  +K
Subjt:  TNGSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK

A0A1S3BNX4 oligoribonuclease3.4e-5882.39Show/hide
Query:  MAMEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACII
        MA +PLVNAFSVLELD EDD + +LSTSSKDDAT S  S  GKSKKEVNISGD+  GER KQGQP+  AE+YKFPLVWIDLEMTGLNVETDRILEIACII
Subjt:  MAMEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACII

Query:  TNGSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK
        TNG+LTKLVEGPDLVI+QSKECLEKMGEWCQSHHAASG  +K
Subjt:  TNGSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK

A0A6J1DKA2 oligoribonuclease isoform X11.5e-5377.86Show/hide
Query:  MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITN
        M+ LVNAFSVLELD EDD + +LST SK DATASS S+ GKSKKEV+ISGD+  GER KQ   D+AAE+YK PLVWIDLEMTGLNVETDRILEIACI+TN
Subjt:  MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITN

Query:  GSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK
        G+LTKL EGPDLVI+QSKECLEKMGEWCQ+HHAASG  +K
Subjt:  GSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK

A0A6J1H2M6 oligoribonuclease3.8e-5783.57Show/hide
Query:  MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITN
        MEP VNAFSVLELD EDD V   ST SKD+A ASS SR GKSKKEVNISGD+L G+R KQ QPD AAE+YKFPLVWIDLEMTGLNVETDRILEIACIITN
Subjt:  MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITN

Query:  GSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK
        GSLTKLVEGP LVI+QSKECLEKMGEWCQSHHAASG  +K
Subjt:  GSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK

A0A6J1K8C8 oligoribonuclease6.9e-5984.29Show/hide
Query:  MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITN
        MEP VNAFSVLELD EDD VC  ST SKD+  ASS SR GKSKKEVNISGD+L GER KQ QPD+AAE+YKFPLVWIDLEMTGLNVETDRILEIACIITN
Subjt:  MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITN

Query:  GSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK
        GSLTKLVEGP LVI+QSKECLEKMGEWCQSHHAASG  +K
Subjt:  GSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK

SwissProt top hitse value%identityAlignment
A2VE52 Oligoribonuclease, mitochondrial2.4e-1650.7Show/hide
Query:  AAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASG
        A E+    +VW+DLEMTGL++E D+I+E+AC+IT+  L  L EGP+L+I Q  E L+ M +WC+ HH  SG
Subjt:  AAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASG

Q5U1X1 Oligoribonuclease, mitochondrial2.4e-1650.7Show/hide
Query:  AAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASG
        A E+    +VW+DLEMTGL++E D+I+E+AC+IT+  L  L EGP+L+I Q  E L+ M +WC+ HH  SG
Subjt:  AAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASG

Q9D8S4 Oligoribonuclease, mitochondrial2.4e-1650.7Show/hide
Query:  AAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASG
        A E+    +VW+DLEMTGL++E D+I+E+AC+IT+  L  L EGP+L+I Q  E L+ M +WC+ HH  SG
Subjt:  AAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASG

Q9Y3B8 Oligoribonuclease, mitochondrial2.4e-1650.7Show/hide
Query:  AAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASG
        A E+    +VW+DLEMTGL++E D+I+E+AC+IT+  L  L EGP+L+I Q  E L+ M +WC+ HH  SG
Subjt:  AAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASG

Q9ZVE0 Oligoribonuclease2.1e-2851.43Show/hide
Query:  MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITN
        M  L NAFSVL               + +DA  +S S  GK ++ VN  G +  G+             YK PLVWIDLEMTGLNVE DRILEIACIITN
Subjt:  MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITN

Query:  GSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK
        G LT+ VEGPDLV+ Q+K+CL+KM +WCQ+HH ASG  +K
Subjt:  GSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK

Arabidopsis top hitse value%identityAlignment
AT2G26970.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.5e-2951.43Show/hide
Query:  MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITN
        M  L NAFSVL               + +DA  +S S  GK ++ VN  G +  G+             YK PLVWIDLEMTGLNVE DRILEIACIITN
Subjt:  MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITN

Query:  GSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK
        G LT+ VEGPDLV+ Q+K+CL+KM +WCQ+HH ASG  +K
Subjt:  GSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK

AT2G26970.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.2e-2848.57Show/hide
Query:  MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITN
        M  L NAFSVL    ED  + S S++                    +++G +  G+             YK PLVWIDLEMTGLNVE DRILEIACIITN
Subjt:  MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITN

Query:  GSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK
        G LT+ VEGPDLV+ Q+K+CL+KM +WCQ+HH ASG  +K
Subjt:  GSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGKNRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATGGAGCCACTTGTAAACGCATTCTCAGTGTTGGAGCTCGACGTTGAAGATGATTATGTTTGCTCTCTTTCTACTTCCTCCAAAGATGACGCTACTGCTTCTTC
CCCTTCAAGAATAGGAAAAAGCAAGAAGGAAGTTAATATCTCTGGTGATGTTCTGGCGGGAGAAAGACACAAGCAAGGTCAACCAGATATAGCTGCAGAAAATTACAAAT
TTCCTCTTGTTTGGATTGACCTGGAAATGACTGGTTTAAATGTTGAAACAGATAGAATACTGGAGATAGCTTGTATAATTACCAATGGCAGTCTGACCAAATTGGTTGAG
GGTCCTGATTTAGTGATTAACCAATCAAAAGAATGTCTAGAGAAAATGGGAGAATGGTGTCAAAGTCATCATGCTGCCAGTGGTAAGAACCGTAAAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATTTCCCAATTACACAAGTCCACGCAGAAAATTGATACAATTTGATGAGAGAGCCCTCCGTGGGCGAGGGAGGTGAAGTTCGGCCGTTTGAGAGTGATACGATTAATATC
TTTGGCGGCAAGATTTGGGAAGAGGAAGGCGATGGCGATGGAGCCACTTGTAAACGCATTCTCAGTGTTGGAGCTCGACGTTGAAGATGATTATGTTTGCTCTCTTTCTA
CTTCCTCCAAAGATGACGCTACTGCTTCTTCCCCTTCAAGAATAGGAAAAAGCAAGAAGGAAGTTAATATCTCTGGTGATGTTCTGGCGGGAGAAAGACACAAGCAAGGT
CAACCAGATATAGCTGCAGAAAATTACAAATTTCCTCTTGTTTGGATTGACCTGGAAATGACTGGTTTAAATGTTGAAACAGATAGAATACTGGAGATAGCTTGTATAAT
TACCAATGGCAGTCTGACCAAATTGGTTGAGGGTCCTGATTTAGTGATTAACCAATCAAAAGAATGTCTAGAGAAAATGGGAGAATGGTGTCAAAGTCATCATGCTGCCA
GTGGTAAGAACCGTAAAGCTTAA
Protein sequenceShow/hide protein sequence
MAMEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVE
GPDLVINQSKECLEKMGEWCQSHHAASGKNRKA