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Lsi10G010100 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G010100
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGATA-type domain-containing protein
Genome locationchr10:14364155..14365796
RNA-Seq ExpressionLsi10G010100
SyntenyLsi10G010100
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0008270 - zinc ion binding (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041360.1 GATA transcription factor 29-like [Cucumis melo var. makuwa]1.5e-8579.72Show/hide
Query:  QLWRQMKSHEYDHHRRFHSESQVDLTLRLGFPNANNAGERPDIDH---NNPFFN-------HHQVMVNNHGLASSGGRNSEIMSEPNYNPHQIVWSKELK
        Q+WRQMKSHEYDHHRRF SESQVDLTLRLGFPN  +AGERPDIDH   NNPFF+        HQ+  NN GLA    RN+E+MSEPNYNPHQIVWSK+LK
Subjt:  QLWRQMKSHEYDHHRRFHSESQVDLTLRLGFPNANNAGERPDIDH---NNPFFN-------HHQVMVNNHGLASSGGRNSEIMSEPNYNPHQIVWSKELK

Query:  TYVLKSNNFGQLHPSSYS-STHQAKPIGT-TPNNS-PNLPLPK--HNNDLYTLLNPASRITDDHEAEASSGGRRRGSRRRRVSTNNDVERRCTNYNCNTN
        TYVLKSNN+GQLHPSSYS +THQAKPI T TPNNS PNLPLPK  HNNDLYTLLNPASRI+DDHEAEASSGGRR+GSRRRR S  NDVERRCTNYNCNTN
Subjt:  TYVLKSNNFGQLHPSSYS-STHQAKPIGT-TPNNS-PNLPLPK--HNNDLYTLLNPASRITDDHEAEASSGGRRRGSRRRRVSTNNDVERRCTNYNCNTN

Query:  FTPMWRKGPLGPKVRIN
        FTPMWRKGPLGPK   N
Subjt:  FTPMWRKGPLGPKVRIN

KAG7010246.1 GATA transcription factor 29, partial [Cucurbita argyrosperma subsp. argyrosperma]4.4e-7769.62Show/hide
Query:  LWR---QMKSHEYDHHRRFHSESQVDLTLRLGFPNAN-------------------NAGERPDIDHNNPFF-------NH-----HQVMV-NNHGLASSG
        +WR   QMK+ EYD H RFHSESQVDLTLRLGFPN N                   NAGERPDIDH+ PFF       NH     HQVMV NNHGLASSG
Subjt:  LWR---QMKSHEYDHHRRFHSESQVDLTLRLGFPNAN-------------------NAGERPDIDHNNPFF-------NH-----HQVMV-NNHGLASSG

Query:  GRNSEIMSEPNYNPHQIVWSKELKTYVLKSNNFGQLHPSSYSSTHQAKPIGTTPNNSPNLPLPKHNNDLYTLLNPASRITDDHEAEASS-GGRRRGSRRR
         RN E+MSE NYNPHQIVWSKELKTYVLKSNNFGQLHPS Y +T+ AK IG+T N+ PNLPL  +NND YTLLNPA R TDDHEAEASS GGRRRG +RR
Subjt:  GRNSEIMSEPNYNPHQIVWSKELKTYVLKSNNFGQLHPSSYSSTHQAKPIGTTPNNSPNLPLPKHNNDLYTLLNPASRITDDHEAEASS-GGRRRGSRRR

Query:  RVSTNNDVERRCTNYNCNTNFTPMWRKGPLGPKVRIN
        RVS  N+VERRCTNYNCNTNFTPMWRKGPLGPK   N
Subjt:  RVSTNNDVERRCTNYNCNTNFTPMWRKGPLGPKVRIN

XP_022943672.1 GATA zinc finger domain-containing protein 8-like [Cucurbita moschata]3.4e-7769.04Show/hide
Query:  LWR---QMKSHEYDHHRRFHSESQVDLTLRLGFPNAN---------------------NAGERPDIDHNNPFF-------NH-----HQVMV-NNHGLAS
        +WR   QMK+ EYD H RFHSESQVDLTLRLGFPN N                     NAGERPDIDH+ PFF       NH     HQVMV NNHGLAS
Subjt:  LWR---QMKSHEYDHHRRFHSESQVDLTLRLGFPNAN---------------------NAGERPDIDHNNPFF-------NH-----HQVMV-NNHGLAS

Query:  SGGRNSEIMSEPNYNPHQIVWSKELKTYVLKSNNFGQLHPSSYSSTHQAKPIGTTPNNSPNLPLPKHNNDLYTLLNPASRITDDHEAEASS-GGRRRGSR
        SGGR+ E+MSE NYNPHQIVWSKELKTYVLKSNNFGQLHPS Y +T+ AK IG+T N  PNLPL  +NND YTLLNPA R TDDHEAEASS GGRRRG +
Subjt:  SGGRNSEIMSEPNYNPHQIVWSKELKTYVLKSNNFGQLHPSSYSSTHQAKPIGTTPNNSPNLPLPKHNNDLYTLLNPASRITDDHEAEASS-GGRRRGSR

Query:  RRRVSTNNDVERRCTNYNCNTNFTPMWRKGPLGPKVRIN
        RRRVS  N+VERRCTNYNCNTNFTPMWRKGPLGPK   N
Subjt:  RRRVSTNNDVERRCTNYNCNTNFTPMWRKGPLGPKVRIN

XP_022985849.1 GATA zinc finger domain-containing protein 8-like [Cucurbita maxima]1.8e-7868.49Show/hide
Query:  LWR---QMKSHEYDHHRRFHSESQVDLTLRLGFPNAN---------------------NAGERPDIDHNNPFF-------NH-----HQVMV-NNHGLAS
        +WR   QMK+HEYDHH RFHSESQVDLTLRLGFPN N                     NAGERPDIDH+ P F       NH     HQVMV NNHGLAS
Subjt:  LWR---QMKSHEYDHHRRFHSESQVDLTLRLGFPNAN---------------------NAGERPDIDHNNPFF-------NH-----HQVMV-NNHGLAS

Query:  SGGRNSEIMSEPNYNPHQIVWSKELKTYVLKSNNFGQLHPSSYSSTHQAKPIGTTPNNSPNLPLPKHNNDLYTLLNPASRITDDHEAEASSGGRRRGSRR
        SGGRN E+MSE NYNPHQIVWSKELKTYVLKSNNFGQLHPS Y +T+ AK +G+T N++ NLPL  +NND YTLLNPA R  DDHEAEASSG RRRG +R
Subjt:  SGGRNSEIMSEPNYNPHQIVWSKELKTYVLKSNNFGQLHPSSYSSTHQAKPIGTTPNNSPNLPLPKHNNDLYTLLNPASRITDDHEAEASSGGRRRGSRR

Query:  RRVSTNNDVERRCTNYNCNTNFTPMWRKGPLGPKVRIN
        RRVS  N+VERRCTNYNCNTNFTPMWRKGPLGPK   N
Subjt:  RRVSTNNDVERRCTNYNCNTNFTPMWRKGPLGPKVRIN

XP_038902274.1 putative GATA transcription factor 22 [Benincasa hispida]3.4e-9383.33Show/hide
Query:  QLWRQMKSHEYDHHRR-FHSESQVDLTLRLGFPNANNAGERPDID-HNNPFF-------NH-----HQVMVNNHGLASSGGRNSEIMSEPNYNPHQIVWS
        Q+WRQMKSHEYDHHRR  HSE+QVDLTLRLGFP+  +A ERPDID HNNPFF       NH     HQVMV+NHG ASSGGRN E+MSE NYNPHQIVWS
Subjt:  QLWRQMKSHEYDHHRR-FHSESQVDLTLRLGFPNANNAGERPDID-HNNPFF-------NH-----HQVMVNNHGLASSGGRNSEIMSEPNYNPHQIVWS

Query:  KELKTYVLKSNNFGQLHPSSYSSTHQAKPIGTTPNNSPNLPLPKHNNDLYTLLNPASRITDDHEAEASSGGRRRGSRRRRVSTNNDVERRCTNYNCNTNF
        KELKTYVLKSN+FGQLHPSSYS+THQAKPI TTPNNSPNLPLPK+NNDLYTLLNPASRITDDHEAEASSGGRRRGSRRRRVS NND ERRCTNYNCNTNF
Subjt:  KELKTYVLKSNNFGQLHPSSYSSTHQAKPIGTTPNNSPNLPLPKHNNDLYTLLNPASRITDDHEAEASSGGRRRGSRRRRVSTNNDVERRCTNYNCNTNF

Query:  TPMWRKGPLGPKVRIN
        TPMWRKGPLGPK   N
Subjt:  TPMWRKGPLGPKVRIN

TrEMBL top hitse value%identityAlignment
A0A0A0L0J0 GATA-type domain-containing protein2.0e-5980.77Show/hide
Query:  HQVMVNNHGLASSGGRNSEIMSEPNY-NPHQIVWSKELKTYVLKS-NNFG-QLHPSSYSSTHQAKPIGT-TPNNSPNLPLPK--HNNDLYTLLNPASRIT
        +QVM NN GL     RN+E+MSEPNY NPHQIVWSK+LKTYVLKS NNFG QLHPSSY +THQAKPI T TPNN+PNLPLPK  HNNDLYTLLNPASR+ 
Subjt:  HQVMVNNHGLASSGGRNSEIMSEPNY-NPHQIVWSKELKTYVLKS-NNFG-QLHPSSYSSTHQAKPIGT-TPNNSPNLPLPK--HNNDLYTLLNPASRIT

Query:  DDHEAEASSGGRRRGSRRRRVSTNNDVERRCTNYNCNTNFTPMWRKGPLGPKVRIN
        DDHEAEASS GRR+GSRRRRVS  NDVERRCTNYNCNTNFTPMWRKGPLGPK   N
Subjt:  DDHEAEASSGGRRRGSRRRRVSTNNDVERRCTNYNCNTNFTPMWRKGPLGPKVRIN

A0A5A7TDI3 GATA transcription factor 29-like7.3e-8679.72Show/hide
Query:  QLWRQMKSHEYDHHRRFHSESQVDLTLRLGFPNANNAGERPDIDH---NNPFFN-------HHQVMVNNHGLASSGGRNSEIMSEPNYNPHQIVWSKELK
        Q+WRQMKSHEYDHHRRF SESQVDLTLRLGFPN  +AGERPDIDH   NNPFF+        HQ+  NN GLA    RN+E+MSEPNYNPHQIVWSK+LK
Subjt:  QLWRQMKSHEYDHHRRFHSESQVDLTLRLGFPNANNAGERPDIDH---NNPFFN-------HHQVMVNNHGLASSGGRNSEIMSEPNYNPHQIVWSKELK

Query:  TYVLKSNNFGQLHPSSYS-STHQAKPIGT-TPNNS-PNLPLPK--HNNDLYTLLNPASRITDDHEAEASSGGRRRGSRRRRVSTNNDVERRCTNYNCNTN
        TYVLKSNN+GQLHPSSYS +THQAKPI T TPNNS PNLPLPK  HNNDLYTLLNPASRI+DDHEAEASSGGRR+GSRRRR S  NDVERRCTNYNCNTN
Subjt:  TYVLKSNNFGQLHPSSYS-STHQAKPIGT-TPNNS-PNLPLPK--HNNDLYTLLNPASRITDDHEAEASSGGRRRGSRRRRVSTNNDVERRCTNYNCNTN

Query:  FTPMWRKGPLGPKVRIN
        FTPMWRKGPLGPK   N
Subjt:  FTPMWRKGPLGPKVRIN

A0A6J1DIM0 GATA transcription factor 293.2e-4957.28Show/hide
Query:  SQLWRQMKSHEYDHHRRFHSESQVDLTLRLGFPNANNAGERPDIDHNNPFFN--------HHQVMV--NNHGLASSGGRNSEIMSEPNYNPHQIVWSKEL
        SQLWR          R   SESQVDLTLRLGFPN N        DHN P F+         HQV    NN GL S GG     MSE NYNP+QI+WSKEL
Subjt:  SQLWRQMKSHEYDHHRRFHSESQVDLTLRLGFPNANNAGERPDIDHNNPFFN--------HHQVMV--NNHGLASSGGRNSEIMSEPNYNPHQIVWSKEL

Query:  KTYVLKSNNFGQLHPSSYSSTHQAKPIGTTPNNSPNLPLPKHNNDLYTLLNPASRITDDHEAEASSGGRRRGSRRRRVSTNNDVERRCTNYNCNTNFTPM
        KTYVLKSNN   L        +     G+T NN  N+PL  ++NDLYTLLNPASR TDDHE E SSG RR+ SR RRVS +++ E+RCTNYNCNTNFTPM
Subjt:  KTYVLKSNNFGQLHPSSYSSTHQAKPIGTTPNNSPNLPLPKHNNDLYTLLNPASRITDDHEAEASSGGRRRGSRRRRVSTNNDVERRCTNYNCNTNFTPM

Query:  WRKGPLGPKVRIN
        WRKGPLGPK   N
Subjt:  WRKGPLGPKVRIN

A0A6J1FTP0 GATA zinc finger domain-containing protein 8-like1.6e-7769.04Show/hide
Query:  LWR---QMKSHEYDHHRRFHSESQVDLTLRLGFPNAN---------------------NAGERPDIDHNNPFF-------NH-----HQVMV-NNHGLAS
        +WR   QMK+ EYD H RFHSESQVDLTLRLGFPN N                     NAGERPDIDH+ PFF       NH     HQVMV NNHGLAS
Subjt:  LWR---QMKSHEYDHHRRFHSESQVDLTLRLGFPNAN---------------------NAGERPDIDHNNPFF-------NH-----HQVMV-NNHGLAS

Query:  SGGRNSEIMSEPNYNPHQIVWSKELKTYVLKSNNFGQLHPSSYSSTHQAKPIGTTPNNSPNLPLPKHNNDLYTLLNPASRITDDHEAEASS-GGRRRGSR
        SGGR+ E+MSE NYNPHQIVWSKELKTYVLKSNNFGQLHPS Y +T+ AK IG+T N  PNLPL  +NND YTLLNPA R TDDHEAEASS GGRRRG +
Subjt:  SGGRNSEIMSEPNYNPHQIVWSKELKTYVLKSNNFGQLHPSSYSSTHQAKPIGTTPNNSPNLPLPKHNNDLYTLLNPASRITDDHEAEASS-GGRRRGSR

Query:  RRRVSTNNDVERRCTNYNCNTNFTPMWRKGPLGPKVRIN
        RRRVS  N+VERRCTNYNCNTNFTPMWRKGPLGPK   N
Subjt:  RRRVSTNNDVERRCTNYNCNTNFTPMWRKGPLGPKVRIN

A0A6J1JEF0 GATA zinc finger domain-containing protein 8-like8.7e-7968.49Show/hide
Query:  LWR---QMKSHEYDHHRRFHSESQVDLTLRLGFPNAN---------------------NAGERPDIDHNNPFF-------NH-----HQVMV-NNHGLAS
        +WR   QMK+HEYDHH RFHSESQVDLTLRLGFPN N                     NAGERPDIDH+ P F       NH     HQVMV NNHGLAS
Subjt:  LWR---QMKSHEYDHHRRFHSESQVDLTLRLGFPNAN---------------------NAGERPDIDHNNPFF-------NH-----HQVMV-NNHGLAS

Query:  SGGRNSEIMSEPNYNPHQIVWSKELKTYVLKSNNFGQLHPSSYSSTHQAKPIGTTPNNSPNLPLPKHNNDLYTLLNPASRITDDHEAEASSGGRRRGSRR
        SGGRN E+MSE NYNPHQIVWSKELKTYVLKSNNFGQLHPS Y +T+ AK +G+T N++ NLPL  +NND YTLLNPA R  DDHEAEASSG RRRG +R
Subjt:  SGGRNSEIMSEPNYNPHQIVWSKELKTYVLKSNNFGQLHPSSYSSTHQAKPIGTTPNNSPNLPLPKHNNDLYTLLNPASRITDDHEAEASSGGRRRGSRR

Query:  RRVSTNNDVERRCTNYNCNTNFTPMWRKGPLGPKVRIN
        RRVS  N+VERRCTNYNCNTNFTPMWRKGPLGPK   N
Subjt:  RRVSTNNDVERRCTNYNCNTNFTPMWRKGPLGPKVRIN

SwissProt top hitse value%identityAlignment
Q9LT45 GATA transcription factor 291.0e-0426.02Show/hide
Query:  ESQVDLTLRLGFPNA------NNAGERPDIDHNNPFFNHHQVMVNNHGLASSGGRNSEIMSEPNYNPHQIVWSKELKTYVLKSNNFGQLHPSSYSSTHQA
        E ++DLTL+LG PN+        +      D      +  +V+ +  GL    G +  I +EP  N   + ++  +  YV     F Q   +  +     
Subjt:  ESQVDLTLRLGFPNA------NNAGERPDIDHNNPFFNHHQVMVNNHGLASSGGRNSEIMSEPNYNPHQIVWSKELKTYVLKSNNFGQLHPSSYSSTHQA

Query:  KPIGTTPNNSPNLPLPKHNNDLYTLLN-PASRITDDHEAEASSGGRRRGSRRRRVSTNN------DVERRCTNYNCNTNFTPMWRKGPLGPKVRIN
         P+  +P  +P  P     +D Y L++ PA R   ++    ++  +   + +R            +  ++CTN NCN   TPMWR+GPLGPK   N
Subjt:  KPIGTTPNNSPNLPLPKHNNDLYTLLN-PASRITDDHEAEASSGGRRRGSRRRRVSTNN------DVERRCTNYNCNTNFTPMWRKGPLGPKVRIN

Arabidopsis top hitse value%identityAlignment
AT3G20750.1 GATA transcription factor 297.4e-0626.02Show/hide
Query:  ESQVDLTLRLGFPNA------NNAGERPDIDHNNPFFNHHQVMVNNHGLASSGGRNSEIMSEPNYNPHQIVWSKELKTYVLKSNNFGQLHPSSYSSTHQA
        E ++DLTL+LG PN+        +      D      +  +V+ +  GL    G +  I +EP  N   + ++  +  YV     F Q   +  +     
Subjt:  ESQVDLTLRLGFPNA------NNAGERPDIDHNNPFFNHHQVMVNNHGLASSGGRNSEIMSEPNYNPHQIVWSKELKTYVLKSNNFGQLHPSSYSSTHQA

Query:  KPIGTTPNNSPNLPLPKHNNDLYTLLN-PASRITDDHEAEASSGGRRRGSRRRRVSTNN------DVERRCTNYNCNTNFTPMWRKGPLGPKVRIN
         P+  +P  +P  P     +D Y L++ PA R   ++    ++  +   + +R            +  ++CTN NCN   TPMWR+GPLGPK   N
Subjt:  KPIGTTPNNSPNLPLPKHNNDLYTLLN-PASRITDDHEAEASSGGRRRGSRRRRVSTNN------DVERRCTNYNCNTNFTPMWRKGPLGPKVRIN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCTCGATCTCAGTTATGGCGTCAAATGAAAAGCCATGAATATGATCATCATCGTCGGTTTCATTCAGAAAGTCAGGTGGATCTGACTCTCCGACTTGGATTCCC
CAATGCCAATAATGCCGGTGAACGTCCTGATATTGATCATAATAATCCATTCTTCAACCATCATCAGGTGATGGTGAACAATCATGGGTTGGCGTCCTCCGGAGGCAGAA
ATAGTGAGATTATGAGTGAACCAAATTACAACCCTCACCAAATTGTATGGTCAAAAGAACTGAAAACCTATGTTCTTAAGTCAAATAATTTTGGGCAGCTTCATCCAAGT
TCATACAGTAGTACTCATCAAGCCAAGCCCATTGGCACCACCCCAAATAACTCCCCCAATCTTCCTCTTCCAAAGCATAATAATGACCTATACACACTCCTCAACCCTGC
TTCTAGAATAACAGACGATCACGAAGCCGAGGCTTCCTCCGGTGGCCGACGGAGAGGTTCGAGACGGCGCCGAGTTTCGACCAACAACGACGTCGAGAGGAGGTGCACCA
ATTACAATTGCAACACCAATTTTACGCCCATGTGGCGTAAAGGCCCTCTTGGTCCCAAGGTACGAATTAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCTCGATCTCAGTTATGGCGTCAAATGAAAAGCCATGAATATGATCATCATCGTCGGTTTCATTCAGAAAGTCAGGTGGATCTGACTCTCCGACTTGGATTCCC
CAATGCCAATAATGCCGGTGAACGTCCTGATATTGATCATAATAATCCATTCTTCAACCATCATCAGGTGATGGTGAACAATCATGGGTTGGCGTCCTCCGGAGGCAGAA
ATAGTGAGATTATGAGTGAACCAAATTACAACCCTCACCAAATTGTATGGTCAAAAGAACTGAAAACCTATGTTCTTAAGTCAAATAATTTTGGGCAGCTTCATCCAAGT
TCATACAGTAGTACTCATCAAGCCAAGCCCATTGGCACCACCCCAAATAACTCCCCCAATCTTCCTCTTCCAAAGCATAATAATGACCTATACACACTCCTCAACCCTGC
TTCTAGAATAACAGACGATCACGAAGCCGAGGCTTCCTCCGGTGGCCGACGGAGAGGTTCGAGACGGCGCCGAGTTTCGACCAACAACGACGTCGAGAGGAGGTGCACCA
ATTACAATTGCAACACCAATTTTACGCCCATGTGGCGTAAAGGCCCTCTTGGTCCCAAGGTACGAATTAATTAA
Protein sequenceShow/hide protein sequence
MDSRSQLWRQMKSHEYDHHRRFHSESQVDLTLRLGFPNANNAGERPDIDHNNPFFNHHQVMVNNHGLASSGGRNSEIMSEPNYNPHQIVWSKELKTYVLKSNNFGQLHPS
SYSSTHQAKPIGTTPNNSPNLPLPKHNNDLYTLLNPASRITDDHEAEASSGGRRRGSRRRRVSTNNDVERRCTNYNCNTNFTPMWRKGPLGPKVRIN