CuGenDBv2

Gene ID	Lsi10G010640
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	chaperonin-like RbcX protein 2, chloroplastic
Genome location	chr10:14879636..14881021
RNA-Seq Expression	Lsi10G010640
Synteny	Lsi10G010640
Gene Ontology terms	GO:0008152 - metabolic process (biological process) GO:0110102 - chloroplast ribulose bisphosphate carboxylase complex assembly (biological process) GO:0044183 - protein folding chaperone (molecular function)
InterPro domains	IPR003435 - Chaperonin-like RbcX IPR038052 - Chaperonin-like RbcX superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7010270.1 Chaperonin-like RbcX protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

6.6e-68

67.76

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Query:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNEFAGQY
        MVGAL V GAPV+DSPPCPCLCLDS PVTN SLR+ GDLVL R+SKAKSHLAVSQ +DLRSSFVNSG EW+LSA GGHR RRNQRRN RLVVVNEFAGQY
Subjt:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNEFAGQY

Query:  EDSFNDVKM--------------------------------------------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM
        E+SF+DVKM                                                  EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM
Subjt:  EDSFNDVKM--------------------------------------------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM

Query:  RERLMETVIWPSDE
        RERLMETVIWPSD+
Subjt:  RERLMETVIWPSDE

XP_004142113.1 chaperonin-like RbcX protein 2, chloroplastic [Cucumis sativus]

7.6e-64

66.82

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Query:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNEFAGQY
        MVGAL VVGAPVVDS P PCL  DS PVTN SLR+GGDLVLQRKSKAKS+L VS+S+DLRSSFVN G EW+LSAGGG +S+RNQRRNRRLVVVNEFAGQY
Subjt:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNEFAGQY

Query:  EDSFNDVKM--------------------------------------------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM
        EDSF+DVKM                                                  EKQDLAERVMITRLHLYNKWVKKCDHAEIYK ISDENLELM
Subjt:  EDSFNDVKM--------------------------------------------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM

Query:  RERLMETVIWPSDE
        RERLMETVIWPSD+
Subjt:  RERLMETVIWPSDE

XP_022944576.1 chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata]

2.3e-68

67.76

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Query:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNEFAGQY
        MVGAL V GAPV+DSPPCPCLCLDS PVTN SLR+ GDLVL R+SKAKSHLAVS+ +DLRSSFVNSG EW+LSA GGHR RRNQRRNRRLVVVNEFAGQY
Subjt:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNEFAGQY

Query:  EDSFNDVKM--------------------------------------------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM
        E+SF+DVKM                                                  EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM
Subjt:  EDSFNDVKM--------------------------------------------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM

Query:  RERLMETVIWPSDE
        RERLMETVIWPSD+
Subjt:  RERLMETVIWPSDE

XP_023512052.1 chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo]

1.7e-68

67.76

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Query:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNEFAGQY
        MVGAL V GAPV+DSPPCPCLCLDS PVTN SLR+ GDLVL R+SKAKSHLAVS+ +DLRSSFVNSG EW+LSA GGHR RRNQRRNRRLVVVNEFAGQY
Subjt:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNEFAGQY

Query:  EDSFNDVKM--------------------------------------------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM
        E+SF+DVKM                                                  EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM
Subjt:  EDSFNDVKM--------------------------------------------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM

Query:  RERLMETVIWPSDE
        RERLMETVIWPSD+
Subjt:  RERLMETVIWPSDE

XP_038902700.1 chaperonin-like RbcX protein 2, chloroplastic [Benincasa hispida]

1.2e-66

68.69

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Query:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNEFAGQY
        MVGAL VVGAPVVDSPPCP LC DS PVT TSLR+GGDLVLQRKS   SHLAVS+S+DLRSSFVNS GEWRLSA GG+RSRRNQRRNRRLVVVNEFAGQY
Subjt:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNEFAGQY

Query:  EDSFNDVKM--------------------------------------------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM
        EDSF+DVKM                                                  EKQDLAERVMITRLHLYNKWVKKCDHAE+YKEISDENLELM
Subjt:  EDSFNDVKM--------------------------------------------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM

Query:  RERLMETVIWPSDE
        RERLMETVIWPSD+
Subjt:  RERLMETVIWPSDE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KX19 Uncharacterized protein

3.7e-64

66.82

Show/hide

Query:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNEFAGQY
        MVGAL VVGAPVVDS P PCL  DS PVTN SLR+GGDLVLQRKSKAKS+L VS+S+DLRSSFVN G EW+LSAGGG +S+RNQRRNRRLVVVNEFAGQY
Subjt:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNEFAGQY

Query:  EDSFNDVKM--------------------------------------------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM
        EDSF+DVKM                                                  EKQDLAERVMITRLHLYNKWVKKCDHAEIYK ISDENLELM
Subjt:  EDSFNDVKM--------------------------------------------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM

Query:  RERLMETVIWPSDE
        RERLMETVIWPSD+
Subjt:  RERLMETVIWPSDE

A0A1S3BNA7 uncharacterized protein LOC103491510

1.4e-63

65.42

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Query:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNEFAGQY
        MVGAL VVGAPV+DSPP PC   DS PVTN SLR+GGDLVLQRKSK KS+  VS+S+DLRSSFVN G EW+LSAGG  +SRRNQRRNRRLV+VNEFAGQY
Subjt:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNEFAGQY

Query:  EDSFNDVKM--------------------------------------------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM
        EDSF+DVKM                                                  EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM
Subjt:  EDSFNDVKM--------------------------------------------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM

Query:  RERLMETVIWPSDE
        RERLMETVIWPSD+
Subjt:  RERLMETVIWPSDE

A0A5A7TJ10 RcbX domain-containing protein

4.8e-64

65.89

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Query:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNEFAGQY
        MVGAL VVGAPV+DSPP PC   DS PVTN SLR+GGDLVLQRKSK KS+  VS+S+DLRSSFVN G EW+LSAGG  RSRRNQRRNRRLV+VNEFAGQY
Subjt:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNEFAGQY

Query:  EDSFNDVKM--------------------------------------------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM
        EDSF+DVKM                                                  EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM
Subjt:  EDSFNDVKM--------------------------------------------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM

Query:  RERLMETVIWPSDE
        RERLMETVIWPSD+
Subjt:  RERLMETVIWPSDE

A0A5D3BAI6 RcbX domain-containing protein

1.4e-63

65.42

Show/hide

Query:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNEFAGQY
        MVGAL VVGAPV+DSPP PC   DS PVTN SLR+GGDLVLQRKSK KS+  VS+S+DLRSSFVN G EW+LSAGG  +SRRNQRRNRRLV+VNEFAGQY
Subjt:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNEFAGQY

Query:  EDSFNDVKM--------------------------------------------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM
        EDSF+DVKM                                                  EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM
Subjt:  EDSFNDVKM--------------------------------------------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM

Query:  RERLMETVIWPSDE
        RERLMETVIWPSD+
Subjt:  RERLMETVIWPSDE

A0A6J1FUS7 chaperonin-like RbcX protein 2, chloroplastic

1.1e-68

67.76

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Query:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNEFAGQY
        MVGAL V GAPV+DSPPCPCLCLDS PVTN SLR+ GDLVL R+SKAKSHLAVS+ +DLRSSFVNSG EW+LSA GGHR RRNQRRNRRLVVVNEFAGQY
Subjt:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNEFAGQY

Query:  EDSFNDVKM--------------------------------------------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM
        E+SF+DVKM                                                  EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM
Subjt:  EDSFNDVKM--------------------------------------------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELM

Query:  RERLMETVIWPSDE
        RERLMETVIWPSD+
Subjt:  RERLMETVIWPSDE

SwissProt top hits

e value

%identity

Alignment

Q8L9X2 Chaperonin-like RbcX protein 2, chloroplastic

9.7e-30

41.4

Show/hide

Query:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNE-FAGQ
        MV A  VVG+PV+DS   PCLCLD+         T G +      + K  L  +++L+L SSF  S   +RLS      SR   R++++L++VNE  AG 
Subjt:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNE-FAGQ

Query:  YEDSFNDVK--------------------------------------------------MEKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLEL
        Y+D+F DV+                                                   E Q+LAERVMITRLHLY KW+KKCDH +IY+EISDENL L
Subjt:  YEDSFNDVK--------------------------------------------------MEKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLEL

Query:  MRERLMETVIWPSDE
        MRERLMETVIWPSD+
Subjt:  MRERLMETVIWPSDE

Arabidopsis top hits

e value

%identity

Alignment

AT5G19855.1 Chaperonin-like RbcX protein

6.9e-31

41.4

Show/hide

Query:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNE-FAGQ
        MV A  VVG+PV+DS   PCLCLD+         T G +      + K  L  +++L+L SSF  S   +RLS      SR   R++++L++VNE  AG 
Subjt:  MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNE-FAGQ

Query:  YEDSFNDVK--------------------------------------------------MEKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLEL
        Y+D+F DV+                                                   E Q+LAERVMITRLHLY KW+KKCDH +IY+EISDENL L
Subjt:  YEDSFNDVK--------------------------------------------------MEKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLEL

Query:  MRERLMETVIWPSDE
        MRERLMETVIWPSD+
Subjt:  MRERLMETVIWPSDE

Sequences

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CDS sequence

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ATGGTGGGAGCTTTGCTTGTTGTCGGTGCGCCGGTGGTCGACTCGCCGCCGTGTCCGTGTTTGTGTTTGGACTCATTGCCGGTTACCAATACAAGTCTCAGAACTGGTGG
GGATTTGGTTTTGCAAAGGAAATCTAAGGCTAAGAGTCATTTGGCCGTGTCTCAATCGTTGGATTTGAGAAGTTCGTTTGTCAATTCCGGTGGCGAGTGGCGGCTCTCGG
CTGGTGGTGGCCACCGGAGTCGGAGGAACCAACGGAGGAATCGGAGGCTTGTTGTTGTCAATGAATTTGCAGGGCAGTATGAGGACAGTTTTAATGATGTGAAAATGGAG
AAGCAAGATTTGGCTGAGAGAGTGATGATAACAAGGCTTCATCTCTATAACAAATGGGTTAAGAAATGTGATCATGCTGAAATATACAAAGAGATATCTGATGAGAACTT
GGAGTTGATGCGAGAGCGACTAATGGAGACTGTGATATGGCCTTCCGACGAGTAG

mRNA sequence

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Protein sequence

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MVGALLVVGAPVVDSPPCPCLCLDSLPVTNTSLRTGGDLVLQRKSKAKSHLAVSQSLDLRSSFVNSGGEWRLSAGGGHRSRRNQRRNRRLVVVNEFAGQYEDSFNDVKME
KQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELMRERLMETVIWPSDE

Lsi10G010640 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome