; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G010690 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G010690
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionphotosystem II 5 kDa protein, chloroplastic
Genome locationchr10:14919678..14919998
RNA-Seq ExpressionLsi10G010690
SyntenyLsi10G010690
Gene Ontology termsNA
InterPro domainsIPR040296 - Photosystem II 5kDa protein, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570402.1 Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]7.1e-3180.53Show/hide
Query:  MASMAMTASFLPAATAKQPS---AASRRALVVAKASTS----NDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAP
        MASM++TASFLP  TA QPS   AA+RRAL V KASTS    +  SN NLEIKNVKVES QGRRELVAAAVTVAAAT AKAAMADEPPRGS EAKQKYAP
Subjt:  MASMAMTASFLPAATAKQPS---AASRRALVVAKASTS----NDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAP

Query:  ICVTMPTARICRK
        ICVTMPTARICRK
Subjt:  ICVTMPTARICRK

XP_004143237.1 photosystem II 5 kDa protein, chloroplastic [Cucumis sativus]1.3e-3786.79Show/hide
Query:  MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT
        MASMAMTASFLP    KQPS+ +RR L+VAKASTSN  SNVN+E+KNVKVESRQGRRELVAAAVTVAAATLAKAAMADEP RGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

XP_008449703.1 PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo]2.4e-3990.57Show/hide
Query:  MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT
        MASMAMTASFLP    KQPSA  RRAL+VAKASTSN+TSNVNLE+KNVKVESRQGRRELVAAAVTVAAATLAKAAMADEP RGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

XP_022944588.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata]5.5e-3178.18Show/hide
Query:  MASMAMTASFLPAATAKQPSAASRRALVVAKASTS----NDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICV
        MASM++TASFLP    +  +AA+RRAL V KASTS    +  SN NLEIKNVKVES QGRRELVAAAVTVAAAT AKAAMADEPPRGS EAKQKYAPICV
Subjt:  MASMAMTASFLPAATAKQPSAASRRALVVAKASTS----NDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

XP_038901593.1 photosystem II 5 kDa protein, chloroplastic [Benincasa hispida]6.4e-4092.45Show/hide
Query:  MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT
        MASMAMTASFLPA   KQPS A+RRALVVAKASTS+D SNVNLEIKNVKVE+RQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

TrEMBL top hitse value%identityAlignment
A0A0A0KIB2 Uncharacterized protein6.5e-3886.79Show/hide
Query:  MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT
        MASMAMTASFLP    KQPS+ +RR L+VAKASTSN  SNVN+E+KNVKVESRQGRRELVAAAVTVAAATLAKAAMADEP RGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

A0A1S3BML8 photosystem II 5 kDa protein, chloroplastic1.2e-3990.57Show/hide
Query:  MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT
        MASMAMTASFLP    KQPSA  RRAL+VAKASTSN+TSNVNLE+KNVKVESRQGRRELVAAAVTVAAATLAKAAMADEP RGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

A0A5A7TID9 Photosystem II 5 kDa protein1.2e-3990.57Show/hide
Query:  MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT
        MASMAMTASFLP    KQPSA  RRAL+VAKASTSN+TSNVNLE+KNVKVESRQGRRELVAAAVTVAAATLAKAAMADEP RGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

A0A6J1FY72 photosystem II 5 kDa protein, chloroplastic2.6e-3178.18Show/hide
Query:  MASMAMTASFLPAATAKQPSAASRRALVVAKASTS----NDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICV
        MASM++TASFLP    +  +AA+RRAL V KASTS    +  SN NLEIKNVKVES QGRRELVAAAVTVAAAT AKAAMADEPPRGS EAKQKYAPICV
Subjt:  MASMAMTASFLPAATAKQPSAASRRALVVAKASTS----NDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

A0A6J1J874 photosystem II 5 kDa protein, chloroplastic2.6e-3178.18Show/hide
Query:  MASMAMTASFLPAATAKQPSAASRRALVVAKASTS----NDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICV
        MASM++TASFLP    +  +AA+RRAL V KASTS    +  SN NLEIKNVKVES QGRRELVAAAVTVAAAT AKAAMADEPPRGS EAKQKYAPICV
Subjt:  MASMAMTASFLPAATAKQPSAASRRALVVAKASTS----NDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

SwissProt top hitse value%identityAlignment
B3EWI4 Photosystem II 5 kDa protein, chloroplastic1.6e-1249.54Show/hide
Query:  MASMAMTASFLPAAT---AKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMAD-EPPRGSPEAKQKYAPICV
        MAS+ M +SFL  +T   AK PS A+RR +V+ KA    +    N+ I   +     GRREL  A    AA ++AK AMAD EP RG+PEAK+KY+ +CV
Subjt:  MASMAMTASFLPAAT---AKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMAD-EPPRGSPEAKQKYAPICV

Query:  TMPTARICR
        T PTARICR
Subjt:  TMPTARICR

P31336 Photosystem II 5 kDa protein, chloroplastic5.0e-1147.17Show/hide
Query:  MASMAMTASFLPAAT-AKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMP
        MAS+ MT SFL      K     ++R LVVA A+      +V +  +  K E   GRRE++ AA   A  ++A  A A EP RGS EAK+ YAP+CVTMP
Subjt:  MASMAMTASFLPAAT-AKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMP

Query:  TARICR
        TARICR
Subjt:  TARICR

Q39195 Photosystem II 5 kDa protein, chloroplastic2.8e-1453.27Show/hide
Query:  MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMA--DEPPRGSPEAKQKYAPICVTM
        MASM MTA+F P A AK PSA   R L V +ASTS++T   +LE+K  +  S   RR+L+  A   A  +LAK AMA  +EP RG+  AK+KYA +CVTM
Subjt:  MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMA--DEPPRGSPEAKQKYAPICVTM

Query:  PTARICR
        PTA+ICR
Subjt:  PTARICR

Arabidopsis top hitse value%identityAlignment
AT1G51400.1 Photosystem II 5 kD protein1.2e-1553.21Show/hide
Query:  MASMAMTASFLPAAT--AKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVE-SRQGRRELVAAAVTVAAATLAKAAMA-DEPPRGSPEAKQKYAPICV
        MASM MT+SFLP  +      S+ SRR+L V KAS S +T++    ++N K E S + RR+LV  A   A  +LAK AMA DEP RG+  AK+KYAP+CV
Subjt:  MASMAMTASFLPAAT--AKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVE-SRQGRRELVAAAVTVAAATLAKAAMA-DEPPRGSPEAKQKYAPICV

Query:  TMPTARICR
        TMPTA+ICR
Subjt:  TMPTARICR

AT3G21055.1 photosystem II subunit T2.0e-1553.27Show/hide
Query:  MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMA--DEPPRGSPEAKQKYAPICVTM
        MASM MTA+F P A AK PSA   R L V +ASTS++T   +LE+K  +  S   RR+L+  A   A  +LAK AMA  +EP RG+  AK+KYA +CVTM
Subjt:  MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMA--DEPPRGSPEAKQKYAPICVTM

Query:  PTARICR
        PTA+ICR
Subjt:  PTARICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATGGCTATGACAGCCTCCTTCCTCCCCGCCGCCACCGCCAAGCAACCCTCCGCCGCCTCCCGCCGAGCCCTTGTCGTCGCCAAGGCCTCCACCTCTAACGA
CACCTCCAATGTCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGACAAGGGCGGCGGGAGTTGGTGGCGGCCGCTGTCACCGTGGCAGCAGCGACCTTGGCGAAGG
CGGCGATGGCTGATGAGCCGCCACGTGGCTCCCCTGAAGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCTCGTATTTGCCGCAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCATGGCTATGACAGCCTCCTTCCTCCCCGCCGCCACCGCCAAGCAACCCTCCGCCGCCTCCCGCCGAGCCCTTGTCGTCGCCAAGGCCTCCACCTCTAACGA
CACCTCCAATGTCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGACAAGGGCGGCGGGAGTTGGTGGCGGCCGCTGTCACCGTGGCAGCAGCGACCTTGGCGAAGG
CGGCGATGGCTGATGAGCCGCCACGTGGCTCCCCTGAAGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCTCGTATTTGCCGCAAGTGA
Protein sequenceShow/hide protein sequence
MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPTARICRK