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Lsi10G010900 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G010900
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-type domain-containing protein
Genome locationchr10:15190659..15193478
RNA-Seq ExpressionLsi10G010900
SyntenyLsi10G010900
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ96112.1 E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo var. makuwa]1.6e-5888.49Show/hide
Query:  IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEFV-GPSSSREPVT
        IHDYMFEESVCLLLRA WYK LI EEREETYD+PE+DQYY YEDDDEE EDAYLG SPSLRIGNRRWG +GYVRAGRQEARPVLR EF  GPSSSR+PVT
Subjt:  IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEFV-GPSSSREPVT

Query:  KHASNDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK
        K AS DKTGRRAKRALKREAADKAAAAKHQEHLARFGRK
Subjt:  KHASNDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK

XP_004140197.1 uncharacterized protein LOC101206609 isoform X1 [Cucumis sativus]3.9e-6090.65Show/hide
Query:  IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEFVGPSSSREPVTK
        IHDYMFEESVCLLLRA WYK  IIEEREETYDDPE+DQYYPYEDDDEE EDAYLG SPSLRIGNRRWG +GYVRAGRQEARPVLR EF GPSSSREPVTK
Subjt:  IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEFVGPSSSREPVTK

Query:  HASN-DKTGRRAKRALKREAADKAAAAKHQEHLARFGRK
         AS+ DKTGRRAKRALKREAADKAAAAKHQEHLARFGRK
Subjt:  HASN-DKTGRRAKRALKREAADKAAAAKHQEHLARFGRK

XP_011657615.1 E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis sativus]3.9e-6090.65Show/hide
Query:  IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEFVGPSSSREPVTK
        IHDYMFEESVCLLLRA WYK  IIEEREETYDDPE+DQYYPYEDDDEE EDAYLG SPSLRIGNRRWG +GYVRAGRQEARPVLR EF GPSSSREPVTK
Subjt:  IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEFVGPSSSREPVTK

Query:  HASN-DKTGRRAKRALKREAADKAAAAKHQEHLARFGRK
         AS+ DKTGRRAKRALKREAADKAAAAKHQEHLARFGRK
Subjt:  HASN-DKTGRRAKRALKREAADKAAAAKHQEHLARFGRK

XP_022943783.1 uncharacterized protein LOC111448431 [Cucurbita moschata]6.9e-5786.76Show/hide
Query:  IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEFVGPSSSREPVTK
        IHDYMFEESVCLLLRA WY+ LI+++REETYDDPEE  YYPYED DEE E+AYLG SPSLRIGNRRWGD+GYVRAGRQEARPVLRPEF G SSSREP TK
Subjt:  IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEFVGPSSSREPVTK

Query:  HASNDKTGRRAKRALKREAADKAAAAKHQEHLARFG
         AS DKTGRRAKRALKREAADKAAAAKHQEHLARFG
Subjt:  HASNDKTGRRAKRALKREAADKAAAAKHQEHLARFG

XP_023511780.1 uncharacterized protein LOC111776696 [Cucurbita pepo subsp. pepo]1.2e-5686.76Show/hide
Query:  IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEFVGPSSSREPVTK
        IHDYMFEESVCLLLRA WY+ LI+++REETYDDPEE  YYPYED DEE E+AYLG SPSLRIGNRRWGD+GYVRAGRQEARPVLRPEF G SSSREP TK
Subjt:  IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEFVGPSSSREPVTK

Query:  HASNDKTGRRAKRALKREAADKAAAAKHQEHLARFG
         AS DKTGRRAKRALKREAADKAAAAKHQEHLARFG
Subjt:  HASNDKTGRRAKRALKREAADKAAAAKHQEHLARFG

TrEMBL top hitse value%identityAlignment
A0A0A0KK15 RING-type domain-containing protein1.9e-6090.65Show/hide
Query:  IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEFVGPSSSREPVTK
        IHDYMFEESVCLLLRA WYK  IIEEREETYDDPE+DQYYPYEDDDEE EDAYLG SPSLRIGNRRWG +GYVRAGRQEARPVLR EF GPSSSREPVTK
Subjt:  IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEFVGPSSSREPVTK

Query:  HASN-DKTGRRAKRALKREAADKAAAAKHQEHLARFGRK
         AS+ DKTGRRAKRALKREAADKAAAAKHQEHLARFGRK
Subjt:  HASN-DKTGRRAKRALKREAADKAAAAKHQEHLARFGRK

A0A1S4DXR5 uncharacterized protein LOC1034914766.3e-5688.06Show/hide
Query:  IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEFV-GPSSSREPVT
        IHDYMFEESVCLLLRA WYK LI EEREETYD+PE+DQYY YEDDDEE EDAYLG SPSLRIGNRRWG +GYVRAGRQEARPVLR EF  GPSSSR+PVT
Subjt:  IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEFV-GPSSSREPVT

Query:  KHASNDKTGRRAKRALKREAADKAAAAKHQEHLA
        K AS DKTGRRAKRALKREAADKAAAAKHQEHLA
Subjt:  KHASNDKTGRRAKRALKREAADKAAAAKHQEHLA

A0A5D3B8D7 E3 ubiquitin-protein ligase RNF13 isoform X27.9e-5988.49Show/hide
Query:  IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEFV-GPSSSREPVT
        IHDYMFEESVCLLLRA WYK LI EEREETYD+PE+DQYY YEDDDEE EDAYLG SPSLRIGNRRWG +GYVRAGRQEARPVLR EF  GPSSSR+PVT
Subjt:  IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEFV-GPSSSREPVT

Query:  KHASNDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK
        K AS DKTGRRAKRALKREAADKAAAAKHQEHLARFGRK
Subjt:  KHASNDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK

A0A6J1FXD4 uncharacterized protein LOC1114484313.3e-5786.76Show/hide
Query:  IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEFVGPSSSREPVTK
        IHDYMFEESVCLLLRA WY+ LI+++REETYDDPEE  YYPYED DEE E+AYLG SPSLRIGNRRWGD+GYVRAGRQEARPVLRPEF G SSSREP TK
Subjt:  IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEFVGPSSSREPVTK

Query:  HASNDKTGRRAKRALKREAADKAAAAKHQEHLARFG
         AS DKTGRRAKRALKREAADKAAAAKHQEHLARFG
Subjt:  HASNDKTGRRAKRALKREAADKAAAAKHQEHLARFG

A0A6J1JFP2 uncharacterized protein LOC1114845977.4e-5786.76Show/hide
Query:  IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEFVGPSSSREPVTK
        IHDYMFEESVCLLLRA WY+ LI+++REETYDDPEE  YYPYED DEE E+AYLG SPSLRIGNRRWGD+GYVRAGRQEARPVLRPEF G SSSREP TK
Subjt:  IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEFVGPSSSREPVTK

Query:  HASNDKTGRRAKRALKREAADKAAAAKHQEHLARFG
         AS DKTGRRAKRALKREAADKAAAAKHQEHLARFG
Subjt:  HASNDKTGRRAKRALKREAADKAAAAKHQEHLARFG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G12310.1 RING/U-box superfamily protein3.5e-2749.69Show/hide
Query:  ALD--IHDYMFEESVCLLLRALWYKSLIIEEREE-----TYDDPEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEFVG
        ALD  + D+MFEESVCLLLRA W++ L   ER        YD     +Y   ++DD++ ++ Y+  S SLR+GNRRWGD+G+VRAGRQEARPV      G
Subjt:  ALD--IHDYMFEESVCLLLRALWYKSLIIEEREE-----TYDDPEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEFVG

Query:  PSSSREPVTKHASNDK-------TGRRAKRALKREAADKA----AAAKHQEHLARFGRK
         +S  EP +  +   K       TGRRAKRA+KREAA+KA    AAAKH+  L R GRK
Subjt:  PSSSREPVTKHASNDK-------TGRRAKRALKREAADKA----AAAKHQEHLARFGRK

AT5G19430.1 RING/U-box superfamily protein1.4e-2852.47Show/hide
Query:  SCRSALD--IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQY---YPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEF
        S   ALD  I D++FEESVCLLLRA W+  L + E + +Y     D +   Y YED+D++ ++ YL  S SLRIGNRRWG +G+VR+GRQEARPV R   
Subjt:  SCRSALD--IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQY---YPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEF

Query:  VGP-------SSSREPVTKHA-SNDKTGRRAKRALKREAADKA----AAAKHQEHLARFGRK
         G        SSS EP  K   + + TGRRAKRA+KREAA+KA    AAAKH+ HL R GRK
Subjt:  VGP-------SSSREPVTKHA-SNDKTGRRAKRALKREAADKA----AAAKHQEHLARFGRK

AT5G19430.2 RING/U-box superfamily protein1.4e-2852.47Show/hide
Query:  SCRSALD--IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQY---YPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEF
        S   ALD  I D++FEESVCLLLRA W+  L + E + +Y     D +   Y YED+D++ ++ YL  S SLRIGNRRWG +G+VR+GRQEARPV R   
Subjt:  SCRSALD--IHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQY---YPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVLRPEF

Query:  VGP-------SSSREPVTKHA-SNDKTGRRAKRALKREAADKA----AAAKHQEHLARFGRK
         G        SSS EP  K   + + TGRRAKRA+KREAA+KA    AAAKH+ HL R GRK
Subjt:  VGP-------SSSREPVTKHA-SNDKTGRRAKRALKREAADKA----AAAKHQEHLARFGRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCCCTTGATGAACTAGGTCCAACAAATTCAGGCCTAAGAATTGGTCGGGCTTCTTGTCGATCTGCCCTCGACATCCACGACTATATGTTTGAGGAGAGCGTATG
CCTGCTTCTGAGAGCTTTGTGGTATAAATCACTGATCATTGAAGAACGGGAGGAAACCTATGATGATCCTGAGGAAGATCAGTACTATCCTTATGAGGATGACGATGAAG
AGTTTGAGGATGCTTACCTGGGTGTATCACCAAGTCTCCGTATCGGAAATCGAAGGTGGGGAGACAGTGGTTATGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTCTT
AGGCCAGAGTTCGTTGGACCTAGTTCATCGAGGGAGCCTGTAACGAAACACGCTTCCAATGACAAAACAGGTCGACGAGCTAAAAGGGCCTTGAAACGGGAAGCTGCCGA
TAAAGCAGCAGCAGCTAAGCATCAAGAACATCTAGCTAGGTTTGGCCGGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCCCTTGATGAACTAGGTCCAACAAATTCAGGCCTAAGAATTGGTCGGGCTTCTTGTCGATCTGCCCTCGACATCCACGACTATATGTTTGAGGAGAGCGTATG
CCTGCTTCTGAGAGCTTTGTGGTATAAATCACTGATCATTGAAGAACGGGAGGAAACCTATGATGATCCTGAGGAAGATCAGTACTATCCTTATGAGGATGACGATGAAG
AGTTTGAGGATGCTTACCTGGGTGTATCACCAAGTCTCCGTATCGGAAATCGAAGGTGGGGAGACAGTGGTTATGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTCTT
AGGCCAGAGTTCGTTGGACCTAGTTCATCGAGGGAGCCTGTAACGAAACACGCTTCCAATGACAAAACAGGTCGACGAGCTAAAAGGGCCTTGAAACGGGAAGCTGCCGA
TAAAGCAGCAGCAGCTAAGCATCAAGAACATCTAGCTAGGTTTGGCCGGAAGTGA
Protein sequenceShow/hide protein sequence
MASLDELGPTNSGLRIGRASCRSALDIHDYMFEESVCLLLRALWYKSLIIEEREETYDDPEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDSGYVRAGRQEARPVL
RPEFVGPSSSREPVTKHASNDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK