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Lsi10G010910 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G010910
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionE3 ubiquitin-protein ligase RNF13 isoform X2
Genome locationchr10:15192110..15198454
RNA-Seq ExpressionLsi10G010910
SyntenyLsi10G010910
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570419.1 hypothetical protein SDJN03_29334, partial [Cucurbita argyrosperma subsp. sororia]4.9e-0576.92Show/hide
Query:  GDNGYSRADRQEARPILRPEFVGPSSSREAIAKHASKDK
        GDNGY RA RQEARP+LRPEF G SSSRE   K ASKDK
Subjt:  GDNGYSRADRQEARPILRPEFVGPSSSREAIAKHASKDK
KAG7010295.1 hypothetical protein SDJN02_27088, partial [Cucurbita argyrosperma subsp. argyrosperma]4.9e-0576.92Show/hide
Query:  GDNGYSRADRQEARPILRPEFVGPSSSREAIAKHASKDK
        GDNGY RA RQEARP+LRPEF G SSSRE   K ASKDK
Subjt:  GDNGYSRADRQEARPILRPEFVGPSSSREAIAKHASKDK
XP_022943783.1 uncharacterized protein LOC111448431 [Cucurbita moschata]2.9e-0576.92Show/hide
Query:  GDNGYSRADRQEARPILRPEFVGPSSSREAIAKHASKDK
        GDNGY RA RQEARP+LRPEF G SSSRE   K ASKDK
Subjt:  GDNGYSRADRQEARPILRPEFVGPSSSREAIAKHASKDK
XP_022987030.1 uncharacterized protein LOC111484597 [Cucurbita maxima]2.9e-0576.92Show/hide
Query:  GDNGYSRADRQEARPILRPEFVGPSSSREAIAKHASKDK
        GDNGY RA RQEARP+LRPEF G SSSRE   K ASKDK
Subjt:  GDNGYSRADRQEARPILRPEFVGPSSSREAIAKHASKDK
XP_023511780.1 uncharacterized protein LOC111776696 [Cucurbita pepo subsp. pepo]4.9e-0576.92Show/hide
Query:  GDNGYSRADRQEARPILRPEFVGPSSSREAIAKHASKDK
        GDNGY RA RQEARP+LRPEF G SSSRE   K ASKDK
Subjt:  GDNGYSRADRQEARPILRPEFVGPSSSREAIAKHASKDK
TrEMBL top hitse value%identityAlignment
A0A0A0KK15 RING-type domain-containing protein3.4e-0469.77Show/hide
Query:  RKARPILRPEFVGPSSSREVIAKHA-SKDKTGRRAKKPLKQEA
        ++ARP+LR EF GPSSSRE + K A SKDKTGRRAK+ LK+EA
Subjt:  RKARPILRPEFVGPSSSREVIAKHA-SKDKTGRRAKKPLKQEA
A0A5A7V3C1 E3 ubiquitin-protein ligase RNF13 isoform X27.7e-0467.44Show/hide
Query:  RKARPILRPEFV-GPSSSREVIAKHASKDKTGRRAKKPLKQEA
        ++ARP+LR EF  GPSSSR+ + K ASKDKTGRRAK+ LK+EA
Subjt:  RKARPILRPEFV-GPSSSREVIAKHASKDKTGRRAKKPLKQEA
A0A5D3B8D7 E3 ubiquitin-protein ligase RNF13 isoform X27.7e-0467.44Show/hide
Query:  RKARPILRPEFV-GPSSSREVIAKHASKDKTGRRAKKPLKQEA
        ++ARP+LR EF  GPSSSR+ + K ASKDKTGRRAK+ LK+EA
Subjt:  RKARPILRPEFV-GPSSSREVIAKHASKDKTGRRAKKPLKQEA
A0A6J1FXD4 uncharacterized protein LOC1114484311.4e-0576.92Show/hide
Query:  GDNGYSRADRQEARPILRPEFVGPSSSREAIAKHASKDK
        GDNGY RA RQEARP+LRPEF G SSSRE   K ASKDK
Subjt:  GDNGYSRADRQEARPILRPEFVGPSSSREAIAKHASKDK
A0A6J1JFP2 uncharacterized protein LOC1114845971.4e-0576.92Show/hide
Query:  GDNGYSRADRQEARPILRPEFVGPSSSREAIAKHASKDK
        GDNGY RA RQEARP+LRPEF G SSSRE   K ASKDK
Subjt:  GDNGYSRADRQEARPILRPEFVGPSSSREAIAKHASKDK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTGGGGAGTGGTGGTGAGAAGAAGAGGAAGAAATGCTGGTTGTTTCCTCCGGCGAGTTGGATGTTGAGAAGAGGGTGGTTGTATCGTCTGCAATGCATCGTTTT
TGAAAACAGACCGCCATTGTTGGGTGAAGAAGGCAAGCTCAAGCTTTTGCAGAGATTTTCATGGCCACAACTACAAGCCTCATTGAGAGAAGAAGAAGAAGAAGAAGAAG
GCTTGAGAATGCAGAAATTAAATGCTTTGAGATTATTAGTTGGACCAACCAAGCTTGATTGTAAGACAAGAATTTTCAGGAAAATTGGCCTAAATTTTTTAACTTTGTCC
GGTTCCAGAAGGCTGCGGCCGAGCAAGGCCAAGCACAATTTTCGGAAAGCCCGACCAATTCTTAGGCCTGAATTTGTTGGACCTAGTTCATCAAGGGAGGTTATAGCGAA
ACATGCTTCCAAAGATAAAACGGGTCGACGAGCTAAAAAGCCCTTGAAACAGGAAGCAGGAAGAATGTACAAGGATGGAATGAATCGAGTTAGGAAGAATTCTTTGAACC
AACTCGAACCAAATTTGGAAGCAAATCACAACGACCCTATTCATGAGGCCCAATCGGGAGTTGGAAAGCTAAAAGAGGCAAAGGTTGATATCGACCACTGCAACTGCAAT
TTTGGGTCGGCTGCTGCTGCTTTATCGGCAGCTTCCCGTTTCAAGGCCCTTTTAGCTCGTCGACCTGTTTTGTCATTGGAAGCGTGTTTCGTTACAGGCTCCCTCGATGA
ACTAGAACTGGTCGGGCTTCTTGTCGACCTGCCCTCACATAACCACTGTCTCCCCACCTTCGATTTCCGATACGGAGACTTGGTGATACACCCAGGTAAGCATCCTCAAA
CTCTTCATCGTCATCCTCATAAGGATAGTACTGATCTTCCTCAGGATCATCATAGGTTTCCTCCCACAGTTGTAACGTCGAGACTCCTTTTGAGGGGGCATCATCAAATC
TCTGAATCGACAATCGAGGGGGTGGGAGACAATGGATACTCGAGGGCAGATCGACAAGAAGCCCGACCAATTCTTAGGCCTGAATTTGTTGGACCTAGTTCATCAAGGGA
GGCTATAGCAAAACATGCTTCCAAAGATAAACGGGTCGACGAGCTAAAAAGCCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTGGGGAGTGGTGGTGAGAAGAAGAGGAAGAAATGCTGGTTGTTTCCTCCGGCGAGTTGGATGTTGAGAAGAGGGTGGTTGTATCGTCTGCAATGCATCGTTTT
TGAAAACAGACCGCCATTGTTGGGTGAAGAAGGCAAGCTCAAGCTTTTGCAGAGATTTTCATGGCCACAACTACAAGCCTCATTGAGAGAAGAAGAAGAAGAAGAAGAAG
GCTTGAGAATGCAGAAATTAAATGCTTTGAGATTATTAGTTGGACCAACCAAGCTTGATTGTAAGACAAGAATTTTCAGGAAAATTGGCCTAAATTTTTTAACTTTGTCC
GGTTCCAGAAGGCTGCGGCCGAGCAAGGCCAAGCACAATTTTCGGAAAGCCCGACCAATTCTTAGGCCTGAATTTGTTGGACCTAGTTCATCAAGGGAGGTTATAGCGAA
ACATGCTTCCAAAGATAAAACGGGTCGACGAGCTAAAAAGCCCTTGAAACAGGAAGCAGGAAGAATGTACAAGGATGGAATGAATCGAGTTAGGAAGAATTCTTTGAACC
AACTCGAACCAAATTTGGAAGCAAATCACAACGACCCTATTCATGAGGCCCAATCGGGAGTTGGAAAGCTAAAAGAGGCAAAGGTTGATATCGACCACTGCAACTGCAAT
TTTGGGTCGGCTGCTGCTGCTTTATCGGCAGCTTCCCGTTTCAAGGCCCTTTTAGCTCGTCGACCTGTTTTGTCATTGGAAGCGTGTTTCGTTACAGGCTCCCTCGATGA
ACTAGAACTGGTCGGGCTTCTTGTCGACCTGCCCTCACATAACCACTGTCTCCCCACCTTCGATTTCCGATACGGAGACTTGGTGATACACCCAGGTAAGCATCCTCAAA
CTCTTCATCGTCATCCTCATAAGGATAGTACTGATCTTCCTCAGGATCATCATAGGTTTCCTCCCACAGTTGTAACGTCGAGACTCCTTTTGAGGGGGCATCATCAAATC
TCTGAATCGACAATCGAGGGGGTGGGAGACAATGGATACTCGAGGGCAGATCGACAAGAAGCCCGACCAATTCTTAGGCCTGAATTTGTTGGACCTAGTTCATCAAGGGA
GGCTATAGCAAAACATGCTTCCAAAGATAAACGGGTCGACGAGCTAAAAAGCCCTTGA
Protein sequenceShow/hide protein sequence
MVVGSGGEKKRKKCWLFPPASWMLRRGWLYRLQCIVFENRPPLLGEEGKLKLLQRFSWPQLQASLREEEEEEEGLRMQKLNALRLLVGPTKLDCKTRIFRKIGLNFLTLS
GSRRLRPSKAKHNFRKARPILRPEFVGPSSSREVIAKHASKDKTGRRAKKPLKQEAGRMYKDGMNRVRKNSLNQLEPNLEANHNDPIHEAQSGVGKLKEAKVDIDHCNCN
FGSAAAALSAASRFKALLARRPVLSLEACFVTGSLDELELVGLLVDLPSHNHCLPTFDFRYGDLVIHPGKHPQTLHRHPHKDSTDLPQDHHRFPPTVVTSRLLLRGHHQI
SESTIEGVGDNGYSRADRQEARPILRPEFVGPSSSREAIAKHASKDKRVDELKSP