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Lsi10G011000 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G011000
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAvrRpt-cleavage domain-containing protein
Genome locationchr10:15261270..15264364
RNA-Seq ExpressionLsi10G011000
SyntenyLsi10G011000
Gene Ontology termsNA
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570425.1 hypothetical protein SDJN03_29340, partial [Cucurbita argyrosperma subsp. sororia]4.6e-3469.92Show/hide
Query:  MDPRTENNRWRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQKHHLHRHRHHH--EHQHQHRHRHHHQPP
        MD RTE NRW+SVPEFGGWD+N P ASNYSVVFS+ARAN+KQQKTDLTEFKR SLGNE+ELMA ADKH    +HH HRHRH H  +H HQ  H HH Q P
Subjt:  MDPRTENNRWRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQKHHLHRHRHHH--EHQHQHRHRHHHQPP

Query:  ADDSVVPQKQKKILTYINCCIRP
         D +VV QK+KKIL+ ++CCI+P
Subjt:  ADDSVVPQKQKKILTYINCCIRP

KAG6605945.1 hypothetical protein SDJN03_03262, partial [Cucurbita argyrosperma subsp. sororia]6.9e-3873.81Show/hide
Query:  MDPRTE-NNRWRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQKHHLHRHR----HHHEHQHQHRHRHHH
        MD R E NNRW+SVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKR SLGNERE+MA ADKH  QQ HH HRH     HH  ++H  +++H  
Subjt:  MDPRTE-NNRWRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQKHHLHRHR----HHHEHQHQHRHRHHH

Query:  QPPADDSVVPQKQKKILTYINCCIRP
        +P   D VVPQK+KKILTYINCCIRP
Subjt:  QPPADDSVVPQKQKKILTYINCCIRP

XP_023512837.1 dendritic arbor reduction protein 1 isoform X1 [Cucurbita pepo subsp. pepo]7.1e-3570.73Show/hide
Query:  MDPRTENNRWRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQKHHLHRHRHHHEHQHQHR--HRHHHQPP
        MD RTE NRW+SVPEFGGWD+N P ASNYSVVFS+ARAN+KQQKTDLTEFKR SLGNE+ELMA ADKH    +HH HRHRH H HQH H+  H HH Q P
Subjt:  MDPRTENNRWRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQKHHLHRHRHHHEHQHQHR--HRHHHQPP

Query:  ADDSVVPQKQKKILTYINCCIRP
         D +VV QK+KKIL+ ++CCI+P
Subjt:  ADDSVVPQKQKKILTYINCCIRP

XP_038901151.1 lateral signaling target protein 2 homolog isoform X1 [Benincasa hispida]1.4e-4682.68Show/hide
Query:  MDPRTENNRWRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQKHHLHRHRHHHE--HQHQHRHRHH----
        M  RTE NRWRSVPEFGGWDHNAPGASNYSVVF+QARA+RKQ+KTDLTEFKRTSLGNERELMA   K H  QKHH HRH HHHE  HQHQH+HRHH    
Subjt:  MDPRTENNRWRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQKHHLHRHRHHHE--HQHQHRHRHH----

Query:  HQPPADDSVVPQKQKKILTYINCCIRP
        HQPPADDSVVPQK+KKILTYINCCIRP
Subjt:  HQPPADDSVVPQKQKKILTYINCCIRP

XP_038901152.1 lateral signaling target protein 2 homolog isoform X2 [Benincasa hispida]9.9e-4581.89Show/hide
Query:  MDPRTENNRWRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQKHHLHRHRHHHE--HQHQHRHRHH----
        M  RTE NRWRSVPEFGGWDHNAPGASNYSVVF+QARA+RKQ+KTDLTEFKRTSLGNERELMA   K H  QKHH HRH HHHE  HQHQH+HRHH    
Subjt:  MDPRTENNRWRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQKHHLHRHRHHHE--HQHQHRHRHH----

Query:  HQPPADDSVVPQKQKKILTYINCCIRP
        HQPPADDSVVP K+KKILTYINCCIRP
Subjt:  HQPPADDSVVPQKQKKILTYINCCIRP

TrEMBL top hitse value%identityAlignment
A0A0A0KK09 AvrRpt-cleavage domain-containing protein5.9e-4374.44Show/hide
Query:  MDPRTENNRWRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQK--HHLHRHRHHHEHQH---------QH
        M  R ENNRWRSVPEFGGWDHNAPGASNYSVVF+QARA+RKQQKTDLTEFK+TSLGNE+ELM   DKHH  QK  HH HRHRHHH H H          H
Subjt:  MDPRTENNRWRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQK--HHLHRHRHHHEHQH---------QH

Query:  RHRHHHQ-PPADDSVVPQKQKKILTYINCCIRP
         H+HHHQ PP DDSV P+K+KKILTYINCCIRP
Subjt:  RHRHHHQ-PPADDSVVPQKQKKILTYINCCIRP

A0A6J1FT95 dendritic arbor reduction protein 1 isoform X11.4e-3369.11Show/hide
Query:  MDPRTENNRWRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQKHHLHRHRHHH--EHQHQHRHRHHHQPP
        MD RTE NRW+SVPEFGGWD+N P ASNYSVVFS+ARAN+KQQKTDLTEFKR SLGNE+ELMA ADKH    +HH HRHRH H  +H HQ  H HH Q P
Subjt:  MDPRTENNRWRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQKHHLHRHRHHH--EHQHQHRHRHHHQPP

Query:  ADDSVVPQKQKKILTYINCCIRP
           +VV QK+KKIL+ ++CCI+P
Subjt:  ADDSVVPQKQKKILTYINCCIRP

A0A6J1FX29 dendritic arbor reduction protein 1 isoform X21.0e-3168.29Show/hide
Query:  MDPRTENNRWRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQKHHLHRHRHHH--EHQHQHRHRHHHQPP
        MD RTE NRW+SVPEFGGWD+N P ASNYSVVFS+ARAN+KQQKTDLTEFKR SLGNE+ELMA ADKH    +HH HRHRH H  +H HQ  H HH Q P
Subjt:  MDPRTENNRWRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQKHHLHRHRHHH--EHQHQHRHRHHHQPP

Query:  ADDSVVPQKQKKILTYINCCIRP
           +VV  K+KKIL+ ++CCI+P
Subjt:  ADDSVVPQKQKKILTYINCCIRP

A0A6J1JCC4 dendritic arbor reduction protein 1 isoform X21.0e-3168.6Show/hide
Query:  MDPRTENNRWRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQKHHLHRHRHHHEHQHQHRHRHHHQPPAD
        MD RTE NRW+SVPEFGGWD+N P ASNYSVVFS+ARAN+KQQKTDLTEFKR SLGNE+ELMA ADKH    +HH HR  H H+H H   H HH Q PAD
Subjt:  MDPRTENNRWRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQKHHLHRHRHHHEHQHQHRHRHHHQPPAD

Query:  DSVVPQKQKKILTYINCCIRP
         +VV  K+KKIL+ ++CCI+P
Subjt:  DSVVPQKQKKILTYINCCIRP

A0A6J1JEB9 dendritic arbor reduction protein 1 isoform X11.4e-3369.42Show/hide
Query:  MDPRTENNRWRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQKHHLHRHRHHHEHQHQHRHRHHHQPPAD
        MD RTE NRW+SVPEFGGWD+N P ASNYSVVFS+ARAN+KQQKTDLTEFKR SLGNE+ELMA ADKH    +HH HR  H H+H H   H HH Q PAD
Subjt:  MDPRTENNRWRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQKHHLHRHRHHHEHQHQHRHRHHHQPPAD

Query:  DSVVPQKQKKILTYINCCIRP
         +VV QK+KKIL+ ++CCI+P
Subjt:  DSVVPQKQKKILTYINCCIRP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G19473.1 RPM1-interacting protein 4 (RIN4) family protein5.3e-2048.36Show/hide
Query:  MDPRTENNRWRSVPEFGGWDHNAPG-ASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQKHHLHRHRHHHEHQHQHRHRHHHQPPA
        MD R EN  W  VP+FGGWD   P  A+NYSVVFS+ARANRKQ K  +   + +SLG+E+ELM +  + +HQQ H                  H H+   
Subjt:  MDPRTENNRWRSVPEFGGWDHNAPG-ASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQKHHLHRHRHHHEHQHQHRHRHHHQPPA

Query:  DDSVVPQKQKKILTYINCCIRP
        DD V+  K+K+ILTYINCCIRP
Subjt:  DDSVVPQKQKKILTYINCCIRP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCTCGGACGGAGAACAACAGGTGGAGATCAGTTCCAGAATTTGGGGGGTGGGATCACAATGCGCCTGGAGCAAGCAATTATTCTGTCGTATTTTCTCAAGCTCG
TGCAAATAGAAAACAGCAAAAGACTGACTTAACTGAGTTCAAAAGAACCAGCCTAGGGAATGAAAGGGAGTTGATGGCAACTGCGGATAAACATCATCACCAACAGAAAC
ATCACCTTCATCGCCATCGCCACCACCATGAACACCAACACCAACATCGCCACCGTCACCACCATCAACCACCAGCAGATGACTCTGTTGTCCCACAGAAGCAAAAGAAG
ATTCTGACCTACATCAATTGTTGTATCAGGCCTTGA
mRNA sequenceShow/hide mRNA sequence
TTTTCCTTCTTCTTCTCTGACCAGCTCCGAAGAGTCCACTGCAAGCAGCTTCGATCGACTTCTTCTCCTGTCTCTCGTTTGGGTTTGTGATGTAAAACGAGATTGAGCAC
CAGAGAACAAGAGAGCTCGAGAACAAGAGAACGAGAGTGCGAGACCGCGAGAAAGAGAGGAATTCAACAAAGAGGAAGAGAGAGCCAAGAGCGAGAACAAAGGCCAACCA
ACATCTTCTTACCTCCCCCTCTCCTCTGGAGACCTTATGGATCCTCGGACGGAGAACAACAGGTGGAGATCAGTTCCAGAATTTGGGGGGTGGGATCACAATGCGCCTGG
AGCAAGCAATTATTCTGTCGTATTTTCTCAAGCTCGTGCAAATAGAAAACAGCAAAAGACTGACTTAACTGAGTTCAAAAGAACCAGCCTAGGGAATGAAAGGGAGTTGA
TGGCAACTGCGGATAAACATCATCACCAACAGAAACATCACCTTCATCGCCATCGCCACCACCATGAACACCAACACCAACATCGCCACCGTCACCACCATCAACCACCA
GCAGATGACTCTGTTGTCCCACAGAAGCAAAAGAAGATTCTGACCTACATCAATTGTTGTATCAGGCCTTGATATGAGACAGAAGCCAATCTACTCCTCTATGTTTTAGT
CATATCATGCTGTTTTTCT
Protein sequenceShow/hide protein sequence
MDPRTENNRWRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQKHHLHRHRHHHEHQHQHRHRHHHQPPADDSVVPQKQKK
ILTYINCCIRP