; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G011090 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G011090
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUDP-N-acetylglucosamine1-carboxyvinyltransferase
Genome locationchr10:15338053..15347680
RNA-Seq ExpressionLsi10G011090
SyntenyLsi10G011090
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005730 - nucleolus (cellular component)
InterPro domainsIPR027973 - Protein of unknown function DUF4602


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570433.1 Proteasome adapter and scaffold protein ECM29, partial [Cucurbita argyrosperma subsp. sororia]4.7e-7458.25Show/hide
Query:  SPIAVTPPPPFFFLLFLSHSRLREPRLLLHSSVNRDKMHSRDKRPKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKK
        +P A    P   F L  + +  R+P LLL   +NRDKMHSRDK  KAGSSR+STDME  M MRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGK QKK
Subjt:  SPIAVTPPPPFFFLLFLSHSRLREPRLLLHSSVNRDKMHSRDKRPKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKK

Query:  QRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMASSSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLLRPASSRNSG------------------
        QRLPLSVARPIMKKQKEREQKMV+EH NV QFGG ASS++SR SLGKRKPE QVLKSSEGFFKHGVLDVKHLLRPA SRNS                   
Subjt:  QRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMASSSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLLRPASSRNSG------------------

Query:  ----------------------------------PSRNSDPFRNSDFGNEMVDAFWKKLKLAAEQK--------------------VNEELSLDAARSFL
                                           + N D  ++ D G+++ DAFWKKLK AAEQK                    VNEELS DAARSFL
Subjt:  ----------------------------------PSRNSDPFRNSDFGNEMVDAFWKKLKLAAEQK--------------------VNEELSLDAARSFL

Query:  DSFSCSSTE
        +SFSCSSTE
Subjt:  DSFSCSSTE

XP_004140183.1 uncharacterized protein LOC101203308 [Cucumis sativus]9.4e-7593.83Show/hide
Query:  MHSRDKRPKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMAS
        MHSRDKR KAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMV+EHS+VRQFGGMAS
Subjt:  MHSRDKRPKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMAS

Query:  SSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLLRPASSRNSGPSRNSDPFRNSDFGNEM
        SSNSR+S GKR+PEEQVLKSSEGFFKHGVLDVKHLLRP+SSRN+G SRNSDPFRN+DFGNEM
Subjt:  SSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLLRPASSRNSGPSRNSDPFRNSDFGNEM

XP_008449630.1 PREDICTED: uncharacterized protein LOC103491457 [Cucumis melo]8.5e-7694.44Show/hide
Query:  MHSRDKRPKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMAS
        MHSRDKR KAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMV+EHS+VRQFGGMAS
Subjt:  MHSRDKRPKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMAS

Query:  SSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLLRPASSRNSGPSRNSDPFRNSDFGNEM
        SSNSR+S GKR+PEEQVLKSSEGFFKHGVLDVKHLLRP+SSRN+GPSRNSDPFRN+DFGNEM
Subjt:  SSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLLRPASSRNSGPSRNSDPFRNSDFGNEM

XP_022944773.1 uncharacterized protein LOC111449125 [Cucurbita moschata]7.8e-6183.33Show/hide
Query:  MHSRDKRPKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMAS
        MHSRDK  KAGSSR+STDME  M MRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMV+EH NV QFGG AS
Subjt:  MHSRDKRPKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMAS

Query:  SSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLLRPASSRNSGPSRNSDPFRNSDFGNEM
        S++SR SLGKRKPE QVLKSSEGFFKHGVLDVKHLLRPA            P RNSDFGNEM
Subjt:  SSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLLRPASSRNSGPSRNSDPFRNSDFGNEM

XP_038900589.1 uncharacterized protein LOC120087770 isoform X1 [Benincasa hispida]1.0e-7391.98Show/hide
Query:  MHSRDKRPKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMAS
        MHSR+KR K GSSR STDMET+MKMRNIKKEIEFLTSSHMSWKD+KEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMV+EHSNVRQFGGMA 
Subjt:  MHSRDKRPKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMAS

Query:  SSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLLRPASSRNSGPSRNSDPFRNSDFGNEM
        SSNSRRSLG+RKPEEQVLKSSEGFFKHGVLDVKHLL PASSRN+GP+RNSDPFRN+DFGNEM
Subjt:  SSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLLRPASSRNSGPSRNSDPFRNSDFGNEM

TrEMBL top hitse value%identityAlignment
A0A0A0KEY3 Uncharacterized protein4.6e-7593.83Show/hide
Query:  MHSRDKRPKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMAS
        MHSRDKR KAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMV+EHS+VRQFGGMAS
Subjt:  MHSRDKRPKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMAS

Query:  SSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLLRPASSRNSGPSRNSDPFRNSDFGNEM
        SSNSR+S GKR+PEEQVLKSSEGFFKHGVLDVKHLLRP+SSRN+G SRNSDPFRN+DFGNEM
Subjt:  SSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLLRPASSRNSGPSRNSDPFRNSDFGNEM

A0A1S3BNE0 uncharacterized protein LOC1034914574.1e-7694.44Show/hide
Query:  MHSRDKRPKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMAS
        MHSRDKR KAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMV+EHS+VRQFGGMAS
Subjt:  MHSRDKRPKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMAS

Query:  SSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLLRPASSRNSGPSRNSDPFRNSDFGNEM
        SSNSR+S GKR+PEEQVLKSSEGFFKHGVLDVKHLLRP+SSRN+GPSRNSDPFRN+DFGNEM
Subjt:  SSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLLRPASSRNSGPSRNSDPFRNSDFGNEM

A0A5A7V3A9 Uncharacterized protein1.3e-5693.65Show/hide
Query:  SSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMASSSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLL
        SSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMV+EHS+V QFGGMASSSNSR+S GKR+PEEQVLKSSEGFFKHGVLDVKHLL
Subjt:  SSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMASSSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLL

Query:  RPASSRNSGPSRNSDPFRNSDFGNEM
        RP+SSRNSGPSRNSDPFRN+DFGNEM
Subjt:  RPASSRNSGPSRNSDPFRNSDFGNEM

A0A6J1FZ06 uncharacterized protein LOC1114491253.8e-6183.33Show/hide
Query:  MHSRDKRPKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMAS
        MHSRDK  KAGSSR+STDME  M MRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMV+EH NV QFGG AS
Subjt:  MHSRDKRPKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMAS

Query:  SSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLLRPASSRNSGPSRNSDPFRNSDFGNEM
        S++SR SLGKRKPE QVLKSSEGFFKHGVLDVKHLLRPA            P RNSDFGNEM
Subjt:  SSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLLRPASSRNSGPSRNSDPFRNSDFGNEM

A0A6J1JBZ2 uncharacterized protein LOC1114836598.4e-6182.72Show/hide
Query:  MHSRDKRPKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMAS
        MHSRDK  KAGSSR+STDME  M MRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPI+KKQKEREQKMV+EH NV QFGGMAS
Subjt:  MHSRDKRPKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMAS

Query:  SSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLLRPASSRNSGPSRNSDPFRNSDFGNEM
        S++SR SLGKRKPE+QVLKSSEGFFKHGVLDVKHLLRPA            P RNSD GNEM
Subjt:  SSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLLRPASSRNSGPSRNSDPFRNSDFGNEM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G44820.1 unknown protein3.2e-2850.33Show/hide
Query:  MHSRDKRPKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMAS
        ++ R    K      ST ++  +  +NI K++    SSHM+WKDKK +E +K+ +LGGK QK  RLPLSVAR  MKKQK+RE+KM+E++  + +FGG  S
Subjt:  MHSRDKRPKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMAS

Query:  SSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLLRPASSRNSGPSRNSD
        SS  + +  KR PEE+VLKS+ G FK GVLDVKHLLR      SGPS +SD
Subjt:  SSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLLRPASSRNSGPSRNSD

AT2G44820.2 unknown protein3.2e-2850.33Show/hide
Query:  MHSRDKRPKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMAS
        ++ R    K      ST ++  +  +NI K++    SSHM+WKDKK +E +K+ +LGGK QK  RLPLSVAR  MKKQK+RE+KM+E++  + +FGG  S
Subjt:  MHSRDKRPKAGSSRDSTDMETQMKMRNIKKEIEFLTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMAS

Query:  SSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLLRPASSRNSGPSRNSD
        SS  + +  KR PEE+VLKS+ G FK GVLDVKHLLR      SGPS +SD
Subjt:  SSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLLRPASSRNSGPSRNSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTAGAGTTCCAGTTGGTAGCATTTTCTGATAACCAAGCAGCAGCCGCACGTCCGATCAGCACTGGCAGCTCTGTTTCTTTTCCTTCTATCTTAGCTTCCTCTGT
ATCGCCGTCGCCGATCGCCGTCACGCCCCCACCGCCATTTTTCTTTCTACTCTTCTTATCTCACTCTCGGCTACGCGAACCCCGTCTACTGCTGCATTCCTCCGTCAATC
GTGACAAGATGCATTCCAGGGATAAAAGGCCAAAAGCGGGATCATCTAGGGACTCGACGGATATGGAAACTCAAATGAAAATGAGAAATATCAAGAAAGAAATTGAATTC
CTCACCTCCTCTCATATGTCATGGAAAGACAAAAAGGAGATCGAGAGTAGAAAAATTGTTTCTCTGGGTGGAAAGCCTCAAAAGAAGCAAAGACTGCCTCTAAGTGTAGC
ACGACCAATCATGAAGAAGCAGAAGGAAAGAGAACAAAAGATGGTAGAAGAGCATTCGAATGTTAGACAATTTGGTGGGATGGCTAGTAGTAGCAACTCTAGAAGATCTT
TGGGGAAGCGCAAGCCGGAGGAGCAGGTTCTTAAGTCGAGTGAAGGCTTTTTTAAACATGGTGTGCTTGATGTCAAGCATCTACTACGTCCAGCCTCTTCTAGGAATAGT
GGCCCTTCTAGGAATAGTGACCCTTTTAGGAATAGTGACTTTGGAAATGAAATGGTCGATGCTTTCTGGAAGAAGCTAAAGTTAGCTGCTGAGCAGAAGGTTAACGAAGA
ACTAAGTTTGGATGCTGCCCGGAGCTTTCTGGACTCATTCAGTTGCAGTTCCACAGAAGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGTAGAGTTCCAGTTGGTAGCATTTTCTGATAACCAAGCAGCAGCCGCACGTCCGATCAGCACTGGCAGCTCTGTTTCTTTTCCTTCTATCTTAGCTTCCTCTGT
ATCGCCGTCGCCGATCGCCGTCACGCCCCCACCGCCATTTTTCTTTCTACTCTTCTTATCTCACTCTCGGCTACGCGAACCCCGTCTACTGCTGCATTCCTCCGTCAATC
GTGACAAGATGCATTCCAGGGATAAAAGGCCAAAAGCGGGATCATCTAGGGACTCGACGGATATGGAAACTCAAATGAAAATGAGAAATATCAAGAAAGAAATTGAATTC
CTCACCTCCTCTCATATGTCATGGAAAGACAAAAAGGAGATCGAGAGTAGAAAAATTGTTTCTCTGGGTGGAAAGCCTCAAAAGAAGCAAAGACTGCCTCTAAGTGTAGC
ACGACCAATCATGAAGAAGCAGAAGGAAAGAGAACAAAAGATGGTAGAAGAGCATTCGAATGTTAGACAATTTGGTGGGATGGCTAGTAGTAGCAACTCTAGAAGATCTT
TGGGGAAGCGCAAGCCGGAGGAGCAGGTTCTTAAGTCGAGTGAAGGCTTTTTTAAACATGGTGTGCTTGATGTCAAGCATCTACTACGTCCAGCCTCTTCTAGGAATAGT
GGCCCTTCTAGGAATAGTGACCCTTTTAGGAATAGTGACTTTGGAAATGAAATGGTCGATGCTTTCTGGAAGAAGCTAAAGTTAGCTGCTGAGCAGAAGGTTAACGAAGA
ACTAAGTTTGGATGCTGCCCGGAGCTTTCTGGACTCATTCAGTTGCAGTTCCACAGAAGAATAGTATGGTTTTCTGCTTCATGCGTCTTGTATTTGATATATAATCTTGC
CTTTATAGACCGCATTTTGCAAGAGTCTGATTCAATTACCAACAAAGATTTGGAAAGGATAAGTTTTGTTTCAAGGGAATTGCTGACACTATCTTTCCGACACATTGGAT
CTTCCACTTAGCCTTAATATTATAAATAGATTTGTATTTCCACATTTATGGCATTTACTTCACTATCTTCGATGTTTTAAAAGGCTAAAGGTGGCCACGAATTTGAGACT
TTTTCTTTTGAAGGGATGAGACGTAAACCTCAAGAGAATCTGAGGCATAAACCTCAGTTTTAACTAAGTACATTATACAATACCTAAATTTGTGTGATTGAACATAATAG
TTATACAAGAATTAGAGAAAGG
Protein sequenceShow/hide protein sequence
MDVEFQLVAFSDNQAAAARPISTGSSVSFPSILASSVSPSPIAVTPPPPFFFLLFLSHSRLREPRLLLHSSVNRDKMHSRDKRPKAGSSRDSTDMETQMKMRNIKKEIEF
LTSSHMSWKDKKEIESRKIVSLGGKPQKKQRLPLSVARPIMKKQKEREQKMVEEHSNVRQFGGMASSSNSRRSLGKRKPEEQVLKSSEGFFKHGVLDVKHLLRPASSRNS
GPSRNSDPFRNSDFGNEMVDAFWKKLKLAAEQKVNEELSLDAARSFLDSFSCSSTEE