CuGenDBv2

Gene ID	Lsi10G011200
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	nuclear pore complex protein NUP96
Genome location	chr10:15446622..15448760
RNA-Seq Expression	Lsi10G011200
Synteny	Lsi10G011200
Gene Ontology terms	GO:0009733 - response to auxin (biological process) GO:0070932 - histone H3 deacetylation (biological process) GO:0090042 - tubulin deacetylation (biological process) GO:0098869 - cellular oxidant detoxification (biological process) GO:0042548 - regulation of photosynthesis, light reaction (biological process) GO:0002758 - innate immune response-activating signal transduction (biological process) GO:0030186 - melatonin metabolic process (biological process) GO:0048574 - long-day photoperiodism, flowering (biological process) GO:0015031 - protein transport (biological process) GO:0006913 - nucleocytoplasmic transport (biological process) GO:0006749 - glutathione metabolic process (biological process) GO:0006325 - chromatin organization (biological process) GO:0051028 - mRNA transport (biological process) GO:0009570 - chloroplast stroma (cellular component) GO:0031965 - nuclear membrane (cellular component) GO:0005829 - cytosol (cellular component) GO:0005739 - mitochondrion (cellular component) GO:0005643 - nuclear pore (cellular component) GO:0051721 - protein phosphatase 2A binding (molecular function) GO:0032041 - NAD-dependent histone deacetylase activity (H3-K14 specific) (molecular function) GO:0048487 - beta-tubulin binding (molecular function) GO:0043621 - protein self-association (molecular function) GO:0043014 - alpha-tubulin binding (molecular function) GO:0042903 - tubulin deacetylase activity (molecular function) GO:0017056 - structural constituent of nuclear pore (molecular function) GO:0004362 - glutathione-disulfide reductase activity (molecular function)
InterPro domains	IPR037637 - Nuclear pore complex protein NUP98-NUP96 IPR037665 - Nucleoporin peptidase S59-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0061746.1 nuclear pore complex protein NUP96 [Cucumis melo var. makuwa]

9.0e-71

93.15

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Query:  AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDI
        AEHSD+WK ATSME+HKSEIENWEFGAGIYISFYSLRSSLQEN EGS LDSLESRNVACGEF+GRLNESLAVWGDRLPVEARVVYSKMAEEISRLLL DI
Subjt:  AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDI

Query:  GEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSEITS
        GEGSTRDAQLSCFDTIF+APMREDLRSSHLQDAVS+FTCYLSEI+S
Subjt:  GEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSEITS

XP_004140177.3 nuclear pore complex protein NUP96 [Cucumis sativus]

1.4e-71

94.52

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Query:  AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDI
        AEHSDIWK ATSME+HKSEIENWEFGAGIYISFYSLRSSLQEN EGSELDSLESRN ACGEFLGRLNESLAVWGDRLPV+ARVVYSKMAEEISRLLL DI
Subjt:  AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDI

Query:  GEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSEITS
        GEGSTRDAQLSCFDTIF+APMREDLRSSHLQDAVS+FTCYLSEITS
Subjt:  GEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSEITS

XP_008449614.1 PREDICTED: nuclear pore complex protein NUP96 [Cucumis melo]

4.8e-72

94.52

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Query:  AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDI
        AEHSD+WK ATSME+HKSEIENWEFGAGIYISFYSLRSSLQEN EGSELDSLESRNVACGEF+GRLNESLAVWGDRLPVEARVVYSKMAEEISRLLL DI
Subjt:  AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDI

Query:  GEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSEITS
        GEGSTRDAQLSCFDTIF+APMREDLRSSHLQDAVS+FTCYLSEITS
Subjt:  GEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSEITS

XP_022153007.1 nuclear pore complex protein NUP96 [Momordica charantia]

2.9e-69

92.47

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Query:  AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDI
        AEHSD+WKLATSME HKSEIENWE GAGIYISFYSLRS LQENNE SE DSLESRNVACGEFLGRLNESLAVWG+RLPVEARVVYSKMAEEISRLLL  I
Subjt:  AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDI

Query:  GEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSEITS
        GEGSTRDAQ+SCFDTIFTAPMREDLRSSHLQDAVS+FTCYLSEITS
Subjt:  GEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSEITS

XP_038901001.1 nuclear pore complex protein NUP96 [Benincasa hispida]

7.4e-73

97.26

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Query:  AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDI
        AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVAC EFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLL DI
Subjt:  AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDI

Query:  GEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSEITS
        GEGSTRDAQLSCF+TIFTAPMREDLRSSHLQDAVS+FTCYLSEITS
Subjt:  GEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSEITS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KGY4 Peptidase S59 domain-containing protein

6.7e-72

94.52

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Query:  AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDI
        AEHSDIWK ATSME+HKSEIENWEFGAGIYISFYSLRSSLQEN EGSELDSLESRN ACGEFLGRLNESLAVWGDRLPV+ARVVYSKMAEEISRLLL DI
Subjt:  AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDI

Query:  GEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSEITS
        GEGSTRDAQLSCFDTIF+APMREDLRSSHLQDAVS+FTCYLSEITS
Subjt:  GEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSEITS

A0A1S3BNC9 nuclear pore complex protein NUP96

2.3e-72

94.52

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Query:  AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDI
        AEHSD+WK ATSME+HKSEIENWEFGAGIYISFYSLRSSLQEN EGSELDSLESRNVACGEF+GRLNESLAVWGDRLPVEARVVYSKMAEEISRLLL DI
Subjt:  AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDI

Query:  GEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSEITS
        GEGSTRDAQLSCFDTIF+APMREDLRSSHLQDAVS+FTCYLSEITS
Subjt:  GEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSEITS

A0A5A7V5H9 Nuclear pore complex protein NUP96

4.4e-71

93.15

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Query:  AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDI
        AEHSD+WK ATSME+HKSEIENWEFGAGIYISFYSLRSSLQEN EGS LDSLESRNVACGEF+GRLNESLAVWGDRLPVEARVVYSKMAEEISRLLL DI
Subjt:  AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDI

Query:  GEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSEITS
        GEGSTRDAQLSCFDTIF+APMREDLRSSHLQDAVS+FTCYLSEI+S
Subjt:  GEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSEITS

A0A6J1DHS9 nuclear pore complex protein NUP96

1.4e-69

92.47

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Query:  AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDI
        AEHSD+WKLATSME HKSEIENWE GAGIYISFYSLRS LQENNE SE DSLESRNVACGEFLGRLNESLAVWG+RLPVEARVVYSKMAEEISRLLL  I
Subjt:  AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDI

Query:  GEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSEITS
        GEGSTRDAQ+SCFDTIFTAPMREDLRSSHLQDAVS+FTCYLSEITS
Subjt:  GEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSEITS

A0A6J1JXJ5 nuclear pore complex protein NUP96

3.1e-69

91.1

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Query:  AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDI
        AEHSDIWKLATSME HKSEI NWEFGAG+YISFYSLRSSLQE +E SELDSLESRN ACGEFLGRLNESLA+WGD LPVEARVVYSKMAEEIS+LLL DI
Subjt:  AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDI

Query:  GEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSEITS
        GEGSTRDAQLSCFDTIFTAP+REDLRSSHLQDAVS+FTCYLSEITS
Subjt:  GEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSEITS

SwissProt top hits

e value

%identity

Alignment

Q8LLD0 Nuclear pore complex protein NUP96

1.0e-48

63.76

Show/hide

Query:  SYHILAEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGS-ELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISR
        S  + A HS+IW++ATSM+  KSEIENW+ GAGIY+SFY L+SSLQE+ +   EL+ L+S N +C  F+GRLNESLAVWGDRLPVEARV YSKMAEEI  
Subjt:  SYHILAEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGS-ELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISR

Query:  LLLLDIGEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSE
        LLL D+ +  +R+ QL+CF+T F AP+ ED+RS+HLQDAVS+F+ YLSE
Subjt:  LLLLDIGEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSE

Arabidopsis top hits

e value

%identity

Alignment

AT1G80680.1 SUPPRESSOR OF AUXIN RESISTANCE 3

7.2e-50

63.76

Show/hide

Query:  SYHILAEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGS-ELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISR
        S  + A HS+IW++ATSM+  KSEIENW+ GAGIY+SFY L+SSLQE+ +   EL+ L+S N +C  F+GRLNESLAVWGDRLPVEARV YSKMAEEI  
Subjt:  SYHILAEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGS-ELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISR

Query:  LLLLDIGEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSE
        LLL D+ +  +R+ QL+CF+T F AP+ ED+RS+HLQDAVS+F+ YLSE
Subjt:  LLLLDIGEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSE

Sequences

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CDS sequence

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mRNA sequence

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ATGAAGTGTACGCTTTCAACCATCTTACTGAAAACCGTAAGATGGTTTCAGGTTTGTTGGTTTAGAACCAATTGTAGTTCCTATCATATTTTAGCTGAGCACTCGGATAT
ATGGAAGCTTGCTACTTCAATGGAGATCCACAAGTCTGAAATAGAAAATTGGGAATTTGGAGCTGGAATTTATATATCATTCTATTCTCTGAGGAGTTCTTTGCAGGAAA
ACAATGAAGGGAGTGAACTGGACTCACTTGAGAGCAGAAATGTTGCTTGTGGGGAATTTCTTGGTCGACTAAATGAATCATTGGCAGTTTGGGGCGACAGATTACCAGTT
GAGGCAAGAGTTGTTTACTCAAAGATGGCCGAGGAGATAAGTAGATTACTTCTATTAGATATAGGGGAGGGTTCTACTCGTGATGCTCAGTTGAGTTGCTTTGACACTAT
TTTTACCGCCCCAATGCGAGAGGATCTTCGCTCAAGTCACTTGCAGGATGCAGTTTCCATTTTTACTTGTTACCTCTCAGAAATCACATCATAGTCTTCACCTCTGTGAA
CTTAACGCAGCTTCGATTTTTAACCGGAGGATCGTGTTTTTGCATATAGTCAATGCCTCTATCCTTTGCTGTATACATTTGAACAAGTAGAGGCAGGAGTGACGGTTTGC
AGACCCCCCTATGGCCCTTCGAACCGCCTGGAGAAAGGGTTTGTGATTCCTGAGGTTGCAATATTAGCAATTAATCTGAAAGCAAAGTTCAAAGGAACGAAATAAGCTGT
TCTTATAAGCCAAATTGGTATTTGTTAGAACTATACCTTCTCTTGTAGTGGTCAGTACATCTCAATTTTTAAATATTTATGGTAGTTAGTCATGTATTTCCCATGAAAAA
TTTACTGAAGTTCACACAAAATTTTACTGATCATCTCTTGCAGTATAGTGGCTTACACTTACACGTCTGATTATCAGCTGATGTTAGGTTTACACTTACACGTCTGATTA
TCAGCTGATGTTAGGTTTGTTATCATCAAAATATTTCTGATTCAAACCATATCAAATGTTGAATGTGAATTTCAAAATATTTTACTTCGCTACCACTCCTAAATAAAATT
CACTTTACAGCTCC

Protein sequence

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MKCTLSTILLKTVRWFQVCWFRTNCSSYHILAEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACGEFLGRLNESLAVWGDRLPV
EARVVYSKMAEEISRLLLLDIGEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSEITS

Lsi10G011200 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome