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Lsi10G011700 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G011700
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description30S ribosomal protein S11, chloroplastic
Genome locationchr10:15981765..15983280
RNA-Seq ExpressionLsi10G011700
SyntenyLsi10G011700
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR001971 - Ribosomal protein S11
IPR018102 - Ribosomal S11, conserved site
IPR036967 - Ribosomal protein S11 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_202958808.1 30S ribosomal protein S11, partial [Solirubrobacter sp. CPCC 204708]1.3e-4595.92Show/hide
Query:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        + + DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
Subjt:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

YP_004841816.1 ribosomal protein S11 [Cucumis melo subsp. melo]1.3e-4595.92Show/hide
Query:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        + + DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
Subjt:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

YP_009236312.1 ribosomal protein S11 [Gynostemma pentaphyllum]1.3e-4595.92Show/hide
Query:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        + + DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
Subjt:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

YP_009310684.1 ribosomal protein S11 [Torricellia angulata]1.3e-4595.92Show/hide
Query:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        + + DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
Subjt:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

YP_009526335.1 ribosomal protein S11 [Hemsleya lijiangensis]1.3e-4595.92Show/hide
Query:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        + + DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
Subjt:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

TrEMBL top hitse value%identityAlignment
A0A109WWL9 30S ribosomal protein S11, chloroplastic6.4e-4695.92Show/hide
Query:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        + + DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
Subjt:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

A0A1P8LFS2 Ribosomal protein S116.4e-4695.92Show/hide
Query:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        + + DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
Subjt:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

A0A1S4EU37 30S ribosomal protein S11, chloroplastic6.4e-4695.92Show/hide
Query:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        + + DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
Subjt:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

A0A249RZ89 30S ribosomal protein S11, chloroplastic6.4e-4695.92Show/hide
Query:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        + + DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
Subjt:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

A0A410HFC3 30S ribosomal protein S11, chloroplastic6.4e-4695.92Show/hide
Query:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        + + DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
Subjt:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

SwissProt top hitse value%identityAlignment
A0ZZ68 30S ribosomal protein S11, chloroplastic2.3e-4894.9Show/hide
Query:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        + + DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKKRRV
Subjt:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

A4QKD8 30S ribosomal protein S11, chloroplastic1.1e-4793.88Show/hide
Query:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        + + DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEV IKGPGLGRDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKKRRV
Subjt:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

B1A968 30S ribosomal protein S11, chloroplastic5.0e-4893.88Show/hide
Query:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        + + DVRGRVISWSSAGTCGF+GTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKKRRV
Subjt:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

Q2L937 30S ribosomal protein S11, chloroplastic2.3e-4894.9Show/hide
Query:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        + + DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKKRRV
Subjt:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

Q4VZK2 30S ribosomal protein S11, chloroplastic5.0e-4894.9Show/hide
Query:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        + + DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
Subjt:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

Arabidopsis top hitse value%identityAlignment
AT1G31817.1 Ribosomal L18p/L5e family protein3.5e-0429.63Show/hide
Query:  IPLQDVRGRVISWSSAGTC-GFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKG-PGLGRDAALRAIRRSGILLS--------FIRDVTPMPHNGC
        + + D +G V   +++G+    KG R+ T + A   A N  R     G++   V + G    G+        R G   S        +I D T   HNGC
Subjt:  IPLQDVRGRVISWSSAGTC-GFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKG-PGLGRDAALRAIRRSGILLS--------FIRDVTPMPHNGC

Query:  RPPKKRRV
        R P+KRRV
Subjt:  RPPKKRRV

AT2G36160.1 Ribosomal protein S11 family protein3.2e-0532.08Show/hide
Query:  IPLQDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCR
        I + D+ GR       G    K  R   +P+AA  AA +  +   + G+    V +        K PG G  +ALRA+ RSG+ +  I DVTP+P +  R
Subjt:  IPLQDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCR

Query:  PPKKRR
            RR
Subjt:  PPKKRR

AT3G11510.1 Ribosomal protein S11 family protein3.2e-0532.08Show/hide
Query:  IPLQDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCR
        I + D+ GR       G    K  R   +P+AA  AA +  +   + G+    V +        K PG G  +ALRA+ RSG+ +  I DVTP+P +  R
Subjt:  IPLQDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCR

Query:  PPKKRR
            RR
Subjt:  PPKKRR

AT3G52580.1 Ribosomal protein S11 family protein3.2e-0532.08Show/hide
Query:  IPLQDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCR
        I + D+ GR       G    K  R   +P+AA  AA +  +   + G+    V +        K PG G  +ALRA+ RSG+ +  I DVTP+P +  R
Subjt:  IPLQDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCR

Query:  PPKKRR
            RR
Subjt:  PPKKRR

ATCG00750.1 ribosomal protein S111.8e-4892.86Show/hide
Query:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
        + + DVRGRVISWSSAGTCGF+GTRRGTPFAAQTAAGNAIRAVVDQGMQRAEV IKGPGLGRDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKKRRV
Subjt:  IPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATGGTGCCTCCCCATACCTTTGCAAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAGGGTACAAGAAGAGGGACACCATTTGC
CGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAG
CTATTCGTAGAAGCGGTATACTATTAAGTTTCATACGGGATGTAACCCCTATGCCACATAATGGCTGTAGGCCCCCTAAAAAACGACGTGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCATGGTGCCTCCCCATACCTTTGCAAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAGGGTACAAGAAGAGGGACACCATTTGC
CGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAG
CTATTCGTAGAAGCGGTATACTATTAAGTTTCATACGGGATGTAACCCCTATGCCACATAATGGCTGTAGGCCCCCTAAAAAACGACGTGTGTAA
Protein sequenceShow/hide protein sequence
MPWCLPIPLQDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV