; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G011780 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G011780
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description60S acidic ribosomal protein family
Genome locationchr10:16061804..16063059
RNA-Seq ExpressionLsi10G011780
SyntenyLsi10G011780
Gene Ontology termsGO:0002182 - cytoplasmic translational elongation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR027534 - Ribosomal protein L12/P1/P2 family
IPR038716 - Ribosomal protein P1/P2, N-terminal domain
IPR044076 - Ribosomal protein P2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570492.1 60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia]4.8e-4074.81Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG
        MKVVAAYLLAVLGGNTSPGLDDVK ILNS                    VGAEVD++RI  LLS+VKGKDITELIASGREKLASVPSGGG++ ++APA G
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG

Query:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
        A G GAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
Subjt:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD

KAG7010354.1 60S acidic ribosomal protein P2B [Cucurbita argyrosperma subsp. argyrosperma]4.8e-4074.81Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG
        MKVVAAYLLAVLGGNTSPGLDDVK ILNS                    VGAEVD++RI  LLS+VKGKDITELIASGREKLASVPSGGG++ ++APA G
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG

Query:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
        A G GAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
Subjt:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD

XP_008458601.1 PREDICTED: 60S acidic ribosomal protein P2B-like [Cucumis melo]1.4e-3974.81Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG
        MKVVAAYLLAVLGGNTSPG+DDVK+ILNS                    VG E+D+ RI LLLSEVKGKD+TELIASGREKLASVPSGGG+IAVSA A G
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG

Query:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
        A G GAAPA AEQKKEEKVEEKEESDDDMGFSLFD
Subjt:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD

XP_022986046.1 60S acidic ribosomal protein P2B-like [Cucurbita maxima]1.4e-3974.07Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG
        MKVVAAYLLAVLGGNTSPGLDDVK ILNS                    VGAEVD++RI  LLS+VKGKDITELIASGREKLASVPSGGG++ ++APA G
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG

Query:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
        A G GAAPAA EQKKEEKVEEKEESDDDMGFSLFD
Subjt:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD

XP_038901119.1 60S acidic ribosomal protein P2B-like [Benincasa hispida]8.8e-4279.26Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG
        MKVVAAYLLAVLGGN SPGLDDVKSILNS                    VGAEVDD+RIGLLLS+VKGKDITELIASGREKLASVPSGGG+IAVSAPA G
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG

Query:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
        A G GAA AAAEQKKEEKVEEKEESDDDMGFSLFD
Subjt:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD

TrEMBL top hitse value%identityAlignment
A0A0A0KGP6 Uncharacterized protein6.8e-4076.3Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG
        MKVVAAYLLAVLGGNTSPG DDVKSILNS                    VGAE+D+ RI LLL+EVKGKDITELIASGREKLASVPSGGG+IAVSA A G
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG

Query:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
        ATG GAA A AEQKKEEKVEEKEESDDDMGFSLFD
Subjt:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD

A0A1S3C8T5 60S acidic ribosomal protein P2B-like6.8e-4074.81Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG
        MKVVAAYLLAVLGGNTSPG+DDVK+ILNS                    VG E+D+ RI LLLSEVKGKD+TELIASGREKLASVPSGGG+IAVSA A G
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG

Query:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
        A G GAAPA AEQKKEEKVEEKEESDDDMGFSLFD
Subjt:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD

A0A5A7SR49 60S acidic ribosomal protein P2B-like6.8e-4074.81Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG
        MKVVAAYLLAVLGGNTSPG+DDVK+ILNS                    VG E+D+ RI LLLSEVKGKD+TELIASGREKLASVPSGGG+IAVSA A G
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG

Query:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
        A G GAAPA AEQKKEEKVEEKEESDDDMGFSLFD
Subjt:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD

A0A6J1FYH3 60S acidic ribosomal protein P2B-like6.8e-4074.07Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG
        MKVVAAYLLAVLGGNTSPGLDDVK ILNS                    VGAEVD++RI  LLS+VKGKDITELIASGREKLASVPSGGG++ ++APA G
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG

Query:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
          G GAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
Subjt:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD

A0A6J1J9Z4 60S acidic ribosomal protein P2B-like6.8e-4074.07Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG
        MKVVAAYLLAVLGGNTSPGLDDVK ILNS                    VGAEVD++RI  LLS+VKGKDITELIASGREKLASVPSGGG++ ++APA G
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG

Query:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
        A G GAAPAA EQKKEEKVEEKEESDDDMGFSLFD
Subjt:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD

SwissProt top hitse value%identityAlignment
O24415 60S acidic ribosomal protein P2B1.1e-3163.7Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG
        MKV+AAYLLAVLGGNTSP  DDVKSIL S                    VGAE D+ ++  LL+E+K KDITE+IA+GRE+L+SVPSGGG+I + APAA 
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG

Query:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
        A G GAAP A E KKEEKVEEKEESD+DMGFSLFD
Subjt:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD

P41099 60S acidic ribosomal protein P27.5e-2860Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG
        MKV+AA+LLA+LGGNTSP  +D+KSIL S                    VGA+ DD++I LLLS+VKGKDITELIASGRE+LASVPSGGG +AV+A A G
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG

Query:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
          G   A AA E KKEEK E  EESD+++GFSLFD
Subjt:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD

P46252 60S acidic ribosomal protein P2A1.4e-2960.74Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG
        MK VAAYLLAVL GN SP  DD+ +IL S                    VG EVD+ ++ LLLS++ GKDITELIA+GREK ASVP GGG +AV   AA 
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG

Query:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
        A  AG A  AAE KKEEKVEEKEESDDDMGFSLFD
Subjt:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD

P51407 60S acidic ribosomal protein P2-11.2e-2859.56Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPS-GGGSIAVSAPAA
        MKVVAA+LLAVL G  SP   D+K IL S                    VGAE +D++I LLL EVKGKD+ ELIA+GREKLASVPS GGG +AV++  +
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPS-GGGSIAVSAPAA

Query:  GATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
        G  G G AP AAE KKEEK EEKEESDDDMGFSLF+
Subjt:  GATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD

Q9SLF7 60S acidic ribosomal protein P2-22.6e-2858.52Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG
        MKVVAAYLLAVL G  SP   D+K+IL S                    VGAE +D++I LLL EVKGKD+ ELIA+GREKLASVPSGGG     A A  
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG

Query:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
          G G   +AAE KKEEK EEKEESDDDMGFSLF+
Subjt:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD

Arabidopsis top hitse value%identityAlignment
AT2G27710.1 60S acidic ribosomal protein family1.8e-2958.52Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG
        MKVVAAYLLAVL G  SP   D+K+IL S                    VGAE +D++I LLL EVKGKD+ ELIA+GREKLASVPSGGG     A A  
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG

Query:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
          G G   +AAE KKEEK EEKEESDDDMGFSLF+
Subjt:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD

AT2G27710.2 60S acidic ribosomal protein family1.8e-2958.52Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG
        MKVVAAYLLAVL G  SP   D+K+IL S                    VGAE +D++I LLL EVKGKD+ ELIA+GREKLASVPSGGG     A A  
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAG

Query:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
          G G   +AAE KKEEK EEKEESDDDMGFSLF+
Subjt:  ATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD

AT2G27720.1 60S acidic ribosomal protein family8.2e-3059.56Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPS-GGGSIAVSAPAA
        MKVVAA+LLAVL G  SP   D+K IL S                    VGAE +D++I LLL EVKGKD+ ELIA+GREKLASVPS GGG +AV++  +
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPS-GGGSIAVSAPAA

Query:  GATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
        G  G G AP AAE KKEEK EEKEESDDDMGFSLF+
Subjt:  GATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD

AT2G27720.2 60S acidic ribosomal protein family2.2e-3060.29Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPS-GGGSIAVSAPAA
        MKVVAA+LLAVL G  SP   D+K IL S  ++       +G    +C  GAE +D++I LLL EVKGKD+ ELIA+GREKLASVPS GGG +AV++  +
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPS-GGGSIAVSAPAA

Query:  GATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
        G  G G AP AAE KKEEK EEKEESDDDMGFSLF+
Subjt:  GATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD

AT2G27720.3 60S acidic ribosomal protein family1.7e-3059.56Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPS-GGGSIAVSAPAA
        MKVVAA+LLAVL G  SP   D+K IL S  ++          +    +VGAE +D++I LLL EVKGKD+ ELIA+GREKLASVPS GGG +AV++  +
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPS-GGGSIAVSAPAA

Query:  GATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
        G  G G AP AAE KKEEK EEKEESDDDMGFSLF+
Subjt:  GATGAGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTGGTCGCTGCATATTTGTTGGCCGTTCTCGGTGGCAACACCAGCCCCGGACTCGATGATGTGAAGTCTATTCTTAATTCAGTGGATGTTATAAGGTTTGGAAA
ATGGGAACGATTGGGCTTTGTTCGATCTGAATGTTTAGTCGGGGCTGAGGTAGATGACAACAGAATTGGCTTGCTATTATCCGAAGTGAAAGGAAAGGATATCACAGAGT
TGATAGCCTCCGGACGGGAGAAGTTGGCGTCAGTGCCGTCTGGTGGCGGTTCAATCGCCGTTTCCGCCCCGGCCGCTGGTGCCACTGGTGCTGGTGCAGCACCAGCCGCA
GCCGAGCAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGATATGGGTTTCAGCCTCTTTGACTGA
mRNA sequenceShow/hide mRNA sequence
CTGACGGCTCCGATCTTTCTCACTCTTCGTTGCAGCTTCTGTTTCGAACTTCCTCAAAGATGAAGGTGGTCGCTGCATATTTGTTGGCCGTTCTCGGTGGCAACACCAGC
CCCGGACTCGATGATGTGAAGTCTATTCTTAATTCAGTGGATGTTATAAGGTTTGGAAAATGGGAACGATTGGGCTTTGTTCGATCTGAATGTTTAGTCGGGGCTGAGGT
AGATGACAACAGAATTGGCTTGCTATTATCCGAAGTGAAAGGAAAGGATATCACAGAGTTGATAGCCTCCGGACGGGAGAAGTTGGCGTCAGTGCCGTCTGGTGGCGGTT
CAATCGCCGTTTCCGCCCCGGCCGCTGGTGCCACTGGTGCTGGTGCAGCACCAGCCGCAGCCGAGCAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGAT
GATATGGGTTTCAGCCTCTTTGACTGAGCAACTCATTTGGTGTCGTTATCAGTTAGTGTTTTAGTTGACTTTCGTTCAAGATTCCGGGCTTTGGTAGCTTGGTAGGGATT
TTTCTTTTTGACTTATTTAGAACTCAAAAATTTTGATAGATGAAAGTTCAATTTTCAATTTCAATATTTCAGTAATTACTGTCATTTGACTTGGTTTGTGATCTATAATT
CCCACTGTTTCTTACCTCATTGTGCATGATTAGTTCTGGCTTATGCTAATTTCATCACGGTTTGTTTTATTGTTTCACTCTGTTTTATCATGTGTGAATGTGCAGTTTGC
TGAGAATTAGAACGTAGGTTTTCATGCTTTTATGCATCATGAGAGTATCGGCTG
Protein sequenceShow/hide protein sequence
MKVVAAYLLAVLGGNTSPGLDDVKSILNSVDVIRFGKWERLGFVRSECLVGAEVDDNRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAA
AEQKKEEKVEEKEESDDDMGFSLFD