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Lsi10G012240 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G012240
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionE3 ubiquitin-protein ligase RZFP34-like
Genome locationchr10:16523886..16525560
RNA-Seq ExpressionLsi10G012240
SyntenyLsi10G012240
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0005634 - nucleus (cellular component)
GO:0008270 - zinc ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR008913 - Zinc finger, CHY-type
IPR037274 - Zinc finger, CHY-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570821.1 E3 ubiquitin-protein ligase RZFP34, partial [Cucurbita argyrosperma subsp. sororia]6.7e-4284.31Show/hide
Query:  MDTHIQASLSFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL
        M+ HIQASLS  SS ES+ISAS+N DAADRESGNFGC HYRRRCKIRAPCCDE+FDCRHCHNE KNSLELETLD HDVPRHQVQKVICSLCDTEQDV   
Subjt:  MDTHIQASLSFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL

Query:  RM
         M
Subjt:  RM

KAG7010663.1 E3 ubiquitin-protein ligase RZFP34 [Cucurbita argyrosperma subsp. argyrosperma]6.7e-4284.31Show/hide
Query:  MDTHIQASLSFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL
        M+ HIQASLS  S  ES+ISAS+NTDAADRESGNFGC HYRRRCKIRAPCCDE+FDCRHCHNE KNSLELETLD HDVPRHQVQKVICSLCDTEQDV   
Subjt:  MDTHIQASLSFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL

Query:  RM
         M
Subjt:  RM

XP_022943779.1 E3 ubiquitin-protein ligase RZFP34-like [Cucurbita moschata]2.0e-4183.33Show/hide
Query:  MDTHIQASLSFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL
        M+ HIQASLS  SS ES+ISAS+N DAADRESGNFGC HYRRRCKIR PCCDE+FDCRHCHNE KNSLELETLD HDVPRHQVQKVICSLCDTEQDV   
Subjt:  MDTHIQASLSFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL

Query:  RM
         M
Subjt:  RM

XP_022986353.1 E3 ubiquitin-protein ligase RZFP34-like [Cucurbita maxima]4.7e-4385.29Show/hide
Query:  MDTHIQASLSFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL
        M+ H QASLS  SS ES+ISAS+NTDAADRESGNFGC HYRRRCKIRAPCCDE+FDCRHCHNE KNSLELETLDPHDVPRHQVQKVICSLCDTEQDV   
Subjt:  MDTHIQASLSFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL

Query:  RM
         M
Subjt:  RM

XP_023513373.1 E3 ubiquitin-protein ligase RZFP34 [Cucurbita pepo subsp. pepo]6.7e-4284.31Show/hide
Query:  MDTHIQASLSFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL
        M+ HIQASLS  S  ES+ISAS+NTDAADRESGNFGC HYRRRCKIRAPCCDE+FDCRHCHNE KNSLELETLD HDVPRHQVQKVICSLCDTEQDV   
Subjt:  MDTHIQASLSFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL

Query:  RM
         M
Subjt:  RM

TrEMBL top hitse value%identityAlignment
A0A0A0KGJ6 Uncharacterized protein2.3e-4086.6Show/hide
Query:  HIQASLS---FSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDV
        HIQASLS    SSSIE  +S S NT AADRESGNFGCLHYRRRCKIRAPCCDE+FDCRHCHNE KNSLELETLDPHDVPRHQ+QKVICSLCDTEQDV
Subjt:  HIQASLS---FSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDV

A0A1S3CNU2 E3 ubiquitin-protein ligase MIEL1 isoform X13.1e-4079.63Show/hide
Query:  MDTHIQASL-----------SFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICS
        MD HIQASL           S SSSIES +S   NT A DRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNE KNSLELETLDPHDVPRHQ+QKVICS
Subjt:  MDTHIQASL-----------SFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICS

Query:  LCDTEQDV
        LCDTEQDV
Subjt:  LCDTEQDV

A0A6J1CF16 E3 ubiquitin-protein ligase RZFP341.5e-3982.47Show/hide
Query:  MDTHIQASLSFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDV
        M T I+AS SFSSS ES++SAS+NTDA +R+SGNFGC HYRRRCKIRAPCCDE+FDCRHCHNE KNSLE +TLDPHD+PRHQVQKVICSLCDTEQDV
Subjt:  MDTHIQASLSFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDV

A0A6J1FVA6 E3 ubiquitin-protein ligase RZFP34-like9.5e-4283.33Show/hide
Query:  MDTHIQASLSFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL
        M+ HIQASLS  SS ES+ISAS+N DAADRESGNFGC HYRRRCKIR PCCDE+FDCRHCHNE KNSLELETLD HDVPRHQVQKVICSLCDTEQDV   
Subjt:  MDTHIQASLSFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL

Query:  RM
         M
Subjt:  RM

A0A6J1JG98 E3 ubiquitin-protein ligase RZFP34-like2.3e-4385.29Show/hide
Query:  MDTHIQASLSFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL
        M+ H QASLS  SS ES+ISAS+NTDAADRESGNFGC HYRRRCKIRAPCCDE+FDCRHCHNE KNSLELETLDPHDVPRHQVQKVICSLCDTEQDV   
Subjt:  MDTHIQASLSFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL

Query:  RM
         M
Subjt:  RM

SwissProt top hitse value%identityAlignment
Q10LI1 E3 ubiquitin-protein ligase SRFP15.4e-1859.09Show/hide
Query:  FGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL
        FGC HYRRRC+IRAPCC++VF CRHCHNE+       T D H++ RH V+ VIC +CDTEQ V+ +
Subjt:  FGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL

Q5JL96 Probable E3 ubiquitin-protein ligase RZFP343.0e-2453.12Show/hide
Query:  ASLSFSSSIESKISASENTDAADRES-----GNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDV
        A +S  S  +     +E+ D  D E        +GC HYRRRC+IRAPCC+E+FDCRHCHNETKNS++++ +  H++PRH+VQ+VICSLC TEQ+V
Subjt:  ASLSFSSSIESKISASENTDAADRES-----GNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDV

Q8LPQ5 Zinc finger protein BRUTUS5.1e-0836Show/hide
Query:  DRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSLRMT
        D E   +GC HY+R CK+RA CCD++F CR CH++  +         H + R  V +++C  C   Q V  +  T
Subjt:  DRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSLRMT

Q8VZK0 E3 ubiquitin-protein ligase MIEL12.9e-1960.61Show/hide
Query:  FGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL
        FGC HY+RRC+IRAPCC+EVFDCRHCHNE+ ++L     D HD+ R  V++VICS+CDTEQ  + +
Subjt:  FGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL

Q9FFB6 E3 ubiquitin-protein ligase RZFP341.9e-2674.24Show/hide
Query:  SGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDV
        SG++GC HYRRRCKIRAPCCDE+FDCRHCHNE K+SL +E    H++PRH+V KVICSLC+TEQDV
Subjt:  SGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDV

Arabidopsis top hitse value%identityAlignment
AT5G18650.1 CHY-type/CTCHY-type/RING-type Zinc finger protein2.0e-2060.61Show/hide
Query:  FGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL
        FGC HY+RRC+IRAPCC+EVFDCRHCHNE+ ++L     D HD+ R  V++VICS+CDTEQ  + +
Subjt:  FGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL

AT5G22920.1 CHY-type/CTCHY-type/RING-type Zinc finger protein1.3e-2774.24Show/hide
Query:  SGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDV
        SG++GC HYRRRCKIRAPCCDE+FDCRHCHNE K+SL +E    H++PRH+V KVICSLC+TEQDV
Subjt:  SGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDV

AT5G25560.1 CHY-type/CTCHY-type/RING-type Zinc finger protein9.8e-2350.55Show/hide
Query:  SFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL
        S SS++E   + S      DR    +GC HYRRRC IRAPCC+E+F C HCH E KN++ ++    HD+PRHQV++VIC LC TEQ+V  +
Subjt:  SFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL

AT5G25560.2 CHY-type/CTCHY-type/RING-type Zinc finger protein9.8e-2350.55Show/hide
Query:  SFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL
        S SS++E   + S      DR    +GC HYRRRC IRAPCC+E+F C HCH E KN++ ++    HD+PRHQV++VIC LC TEQ+V  +
Subjt:  SFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSL

AT5G25560.3 CHY-type/CTCHY-type/RING-type Zinc finger protein2.7e-2045.54Show/hide
Query:  SFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQ----------KVICSLCDTEQDVSS
        S SS++E   + S      DR    +GC HYRRRC IRAPCC+E+F C HCH E KN++ ++    HD+PRHQV+          +VIC LC TEQ+V  
Subjt:  SFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQ----------KVICSLCDTEQDVSS

Query:  L
        +
Subjt:  L


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACTCATATTCAGGCTTCATTATCTTTTTCTTCTTCCATTGAATCTAAAATTTCTGCCTCCGAGAATACAGATGCCGCGGATCGTGAATCGGGGAATTTCGGGTG
CTTGCATTATCGAAGGAGATGCAAGATTAGAGCGCCCTGTTGCGATGAGGTTTTTGATTGTAGGCATTGTCATAATGAAACTAAGAACTCCCTTGAATTGGAAACTCTTG
ATCCACATGATGTTCCTCGCCATCAAGTTCAGAAGGTTATCTGTTCCTTATGTGATACAGAACAAGATGTGAGTTCCTTGAGAATGACCCTGTAA
mRNA sequenceShow/hide mRNA sequence
TTACGGTTCTTGGAGAGTGAAATCCCCAAAACACCCTCACTGACGGTTTAAACCCCACTCGAACTCCTCTCCCGTTGCAAATCGTTGTAACAAAAGGATTTTTTTTCTCT
CCGCTTCAGAAAACAATCGAGGGATTCATAATACAATGGATACTCATATTCAGGCTTCATTATCTTTTTCTTCTTCCATTGAATCTAAAATTTCTGCCTCCGAGAATACA
GATGCCGCGGATCGTGAATCGGGGAATTTCGGGTGCTTGCATTATCGAAGGAGATGCAAGATTAGAGCGCCCTGTTGCGATGAGGTTTTTGATTGTAGGCATTGTCATAA
TGAAACTAAGAACTCCCTTGAATTGGAAACTCTTGATCCACATGATGTTCCTCGCCATCAAGTTCAGAAGGTTATCTGTTCCTTATGTGATACAGAACAAGATGTGAGTT
CCTTGAGAATGACCCTGTAA
Protein sequenceShow/hide protein sequence
MDTHIQASLSFSSSIESKISASENTDAADRESGNFGCLHYRRRCKIRAPCCDEVFDCRHCHNETKNSLELETLDPHDVPRHQVQKVICSLCDTEQDVSSLRMTL