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Lsi10G012310 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G012310
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRep_fac-A_C domain-containing protein
Genome locationchr10:16588936..16591105
RNA-Seq ExpressionLsi10G012310
SyntenyLsi10G012310
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013955 - Replication factor A, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022140388.1 uncharacterized protein LOC111011075 [Momordica charantia]6.4e-7690.57Show/hide
Query:  MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNPG--SSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MEN KPITTMC V+AMDH+SFCYRVCSICER+LPD PSSSLCKFCNFNAFNPG  SSKR+FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
Subjt:  MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNPG--SSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRS
        HPFAAET SEILEGEMFR+TISKPKNGNAQHSRVV VVPLSSGFQPAI RLRELYG +S
Subjt:  HPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRS
XP_022943427.1 uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata]7.1e-7588.82Show/hide
Query:  MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNPG--SSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MEN KPITTMCAVIAMDHTSFCYRVCSICERTLP  P  SLCKFCNFNAFNPG  SSKRVFR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNPG--SSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS
        HPFAAE VSEILEGEMFR+TISKPKNGNAQHSRVV +VPLSSGFQPAI RLRELYG+   S
Subjt:  HPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS
XP_022943430.1 uncharacterized protein LOC111448196 isoform X2 [Cucurbita moschata]7.1e-7588.82Show/hide
Query:  MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNPG--SSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MEN KPITTMCAVIAMDHTSFCYRVCSICERTLP  P  SLCKFCNFNAFNPG  SSKRVFR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNPG--SSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS
        HPFAAE VSEILEGEMFR+TISKPKNGNAQHSRVV +VPLSSGFQPAI RLRELYG+   S
Subjt:  HPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS
XP_023512879.1 uncharacterized protein LOC111777484 isoform X3 [Cucurbita pepo subsp. pepo]2.1e-7488.82Show/hide
Query:  MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNP--GSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MEN KPITTMCAVIAMDHTSFCYRVCSICERTLP  P  SLCKFCNFNAFNP   SSKRVFRLLMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNP--GSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS
        HPFAAE VSEILEGEMFR+TISKPKNGNAQHSRVV +VPLSSGFQPAI RLRELYG+   S
Subjt:  HPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS
XP_038901726.1 uncharacterized protein LOC120088466 [Benincasa hispida]5.2e-7893.71Show/hide
Query:  MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNP--GSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MEN KPITTMCAVIAMDHTSFCYRVCSICERTLPD PSSS+CKFCNFNAFNP   SSKRVFRLLMSIATD+KVQTVICFDRAARVLFGCSADEFFDFAKL
Subjt:  MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNP--GSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRS
        HPFAAETVSEILEGEMFRITISKPKNGNAQHSRVV VVPLSSGFQPAIFRLRELYG +S
Subjt:  HPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRS
TrEMBL top hitse value%identityAlignment
A0A1S3CNQ4 uncharacterized protein LOC1035030281.7e-7489.94Show/hide
Query:  MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNPG--SSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MEN KPITTMCAVIAMD+T+FCYRVCSICERTLP  PSSSLCKFCNFNAFNPG  SSKRVFRLLMSIATDK+VQTVICFDR A+VLFGCSADEFFDFAKL
Subjt:  MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNPG--SSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRS
        HPFAAETVSEIL GEMFRITISKPKNGNAQHSRVV +VPLSS FQPAI RLRELYGV S
Subjt:  HPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRS
A0A6J1CHW5 uncharacterized protein LOC1110110753.1e-7690.57Show/hide
Query:  MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNPG--SSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MEN KPITTMC V+AMDH+SFCYRVCSICER+LPD PSSSLCKFCNFNAFNPG  SSKR+FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
Subjt:  MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNPG--SSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRS
        HPFAAET SEILEGEMFR+TISKPKNGNAQHSRVV VVPLSSGFQPAI RLRELYG +S
Subjt:  HPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRS
A0A6J1FWW9 uncharacterized protein LOC111448196 isoform X13.4e-7588.82Show/hide
Query:  MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNPG--SSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MEN KPITTMCAVIAMDHTSFCYRVCSICERTLP  P  SLCKFCNFNAFNPG  SSKRVFR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNPG--SSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS
        HPFAAE VSEILEGEMFR+TISKPKNGNAQHSRVV +VPLSSGFQPAI RLRELYG+   S
Subjt:  HPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS
A0A6J1FXT2 uncharacterized protein LOC111448196 isoform X23.4e-7588.82Show/hide
Query:  MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNPG--SSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MEN KPITTMCAVIAMDHTSFCYRVCSICERTLP  P  SLCKFCNFNAFNPG  SSKRVFR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNPG--SSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS
        HPFAAE VSEILEGEMFR+TISKPKNGNAQHSRVV +VPLSSGFQPAI RLRELYG+   S
Subjt:  HPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS
A0A6J1J8M2 uncharacterized protein LOC111483608 isoform X33.8e-7488.2Show/hide
Query:  MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNPG--SSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MEN K ITTMCAVIAMDHTSFCYRVCSICERTLP  P  SLCKFCNFNAFNPG  SSKRVFR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNPG--SSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS
        HPFAAE VSEILEGEMFR+TISKPKNGNAQHSRVV +VPLSSGFQPAI RLRELYG+   S
Subjt:  HPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G28105.1 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).9.9e-4356.38Show/hide
Query:  TTMCAVIAMDHTSFCYRVCSICERTLPDK----PSSSLCKFCNFNAFNPGSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAA
        T +C ++A+D T +CYRVCS C+R LP       SSS CKFC          K ++R+LMSIATD  V+TVICFDRAA VLFGCSADEFF F KL+P AA
Subjt:  TTMCAVIAMDHTSFCYRVCSICERTLPDK----PSSSLCKFCNFNAFNPGSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAA

Query:  ETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLREL
          V+++ +GEM R+T+++P+N NAQH RV  VVPL SG QPAI  LR++
Subjt:  ETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLREL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAATGCTAAGCCAATAACAACCATGTGCGCAGTGATAGCTATGGATCACACTAGTTTCTGTTACAGGGTTTGTTCTATCTGTGAGAGAACACTTCCTGATAAACC
ATCTTCTTCTCTTTGCAAATTCTGCAACTTCAACGCCTTCAATCCCGGTTCCTCCAAACGCGTCTTTCGTCTTCTTATGTCAATTGCAACGGATAAGAAAGTACAAACTG
TAATATGCTTTGATAGGGCTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTCGACTTTGCTAAGCTACATCCTTTTGCTGCTGAAACTGTAAGTGAAATTCTG
GAAGGGGAGATGTTTAGAATCACAATCTCTAAACCGAAGAATGGCAATGCACAACACTCAAGAGTTGTCCATGTTGTTCCTCTGAGTTCAGGTTTTCAGCCAGCAATTTT
TAGACTCAGGGAATTGTATGGGGTAAGAAGCTGCTCTTAA
mRNA sequenceShow/hide mRNA sequence
AAAACGATATCGAAATTTCGGTCTTCTTTTCCCTCCAAACAGTGTTTGTGTGTATAGCGGCGGAGCGCCGCTGTGTTTTCAGTTTTCAGGAACGGAAGCAGTCTCCTTCA
GAAGAGTAATGGAAAATGCTAAGCCAATAACAACCATGTGCGCAGTGATAGCTATGGATCACACTAGTTTCTGTTACAGGGTTTGTTCTATCTGTGAGAGAACACTTCCT
GATAAACCATCTTCTTCTCTTTGCAAATTCTGCAACTTCAACGCCTTCAATCCCGGTTCCTCCAAACGCGTCTTTCGTCTTCTTATGTCAATTGCAACGGATAAGAAAGT
ACAAACTGTAATATGCTTTGATAGGGCTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTCGACTTTGCTAAGCTACATCCTTTTGCTGCTGAAACTGTAAGTG
AAATTCTGGAAGGGGAGATGTTTAGAATCACAATCTCTAAACCGAAGAATGGCAATGCACAACACTCAAGAGTTGTCCATGTTGTTCCTCTGAGTTCAGGTTTTCAGCCA
GCAATTTTTAGACTCAGGGAATTGTATGGGGTAAGAAGCTGCTCTTAATTTTCCTTTCTTTGTCATTAGTTCTTCTTATTATGCGTTTTTCCACATGCTTTTCTTTTTCT
TGAGGACTATCATCTGAGGTTTGGGTGGATGCTTAGGCAGGCATATTTGAAGCTCCACAATTATTTAGCTGAACTCCCATGGATAAATTTAATTACTGTTTATTAGTATA
TATATTATTTTGATTAGCAAAAAGATTCGTAATGCACTGAAGATCATTATTTCATATATTGGGGAACTGAGATACATCAATACTTGTTTATCAGGAGGAAGGGAAGTAAA
TTGAGCTAGTTCCTCGTAGTTGTTTTAAGAGAGATATGGAAGCTCTTGAATTCTCCTCAGTTGTATTGTTGTGGTTTTGTTTTTTCCATAGTGGTGTATTTATAGCAAAG
GACGTACGCAGAAATAAGGTTTATTGAAATGGTTTTGGGATTTCATATTCTAAAGTGGAAACTATAATAACTTGGTATAAAGTTATGATGAGGGGAAAGACTCAAGTTAA
GCTCCAACTTACGAAATAATTTGGTGTCTTCTACATTTTTAATTGTAAACACCCAATCCTTTTGCTTCTTCCACAGAACAAGAGCTAGTATAACATTGTCTTCACCCGGT
GAGCGTCGGTGAAGCTGCACCATGGGATTGTCATTTTATGCATCCAGACAAAAAGAAGCATCAAATTCAAAGGTGTCCCTTCATTTAAGCTCCATTCTTCTTTGTCAGAT
AATACAAAATTGTGCTAAATGAGCAGATGGGTGAAATTTGAAATTGTCCCTTCAGTTAATATAGCTTTTTTCAATTTAGTTATGTATAGTCAGAATCTGTTCCATTTGTA
GCTCTGTTGTCTGTATCCCTTGTTCTGAAACAGTTCAACTTCAAAACTTAATAGATATTCCTTGAGTGCATACTGATCAAGCTGATGCTTTTATGAGTTCAATAAGAAAG
AAAATTTGGGTTTAAATTACAAAAGT
Protein sequenceShow/hide protein sequence
MENAKPITTMCAVIAMDHTSFCYRVCSICERTLPDKPSSSLCKFCNFNAFNPGSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEIL
EGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS