; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G012380 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G012380
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description50S ribosomal protein L18
Genome locationchr10:16637730..16640555
RNA-Seq ExpressionLsi10G012380
SyntenyLsi10G012380
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK06187.1 50S ribosomal protein L18 [Cucumis melo var. makuwa]3.9e-5793.02Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGF+NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNSGVKLILDDNV-DDAARSSYQ
        AIVNSLKN+GVKLILD+NV DDAA+S+YQ
Subjt:  AIVNSLKNSGVKLILDDNV-DDAARSSYQ

XP_022943852.1 uncharacterized protein LOC111448460 [Cucurbita moschata]1.3e-5793.75Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH DINKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNSGVKLILDDNVDDAARSSYQ
        AIVNSLKN+GVKLILD+N DDA+R SY+
Subjt:  AIVNSLKNSGVKLILDDNVDDAARSSYQ

XP_022985582.1 uncharacterized protein LOC111483610 [Cucurbita maxima]1.7e-5793.75Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH DINKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNSGVKLILDDNVDDAARSSYQ
        AIVNSLKN+GVKLILD+N DDA R SY+
Subjt:  AIVNSLKNSGVKLILDDNVDDAARSSYQ

XP_023511782.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo]1.7e-5792.97Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH D+NKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNSGVKLILDDNVDDAARSSYQ
        AIVNSLKN+GVKLILD+N DDA+R SY+
Subjt:  AIVNSLKNSGVKLILDDNVDDAARSSYQ

XP_038901007.1 uncharacterized protein LOC120088052 [Benincasa hispida]8.3e-6096.09Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHAD+NKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNSGVKLILDDNVDDAARSSYQ
        AIVN+LKN+GVKLILD+NVDDA+RSSYQ
Subjt:  AIVNSLKNSGVKLILDDNVDDAARSSYQ

TrEMBL top hitse value%identityAlignment
A0A0A0KX15 Uncharacterized protein2.6e-5967.66Show/hide
Query:  GCFLWLSILEQGLTETKGTTPIGSDQ--RGGTITKLFRAR-------AFKEAPRLTLVIRTGFWTFYKLLLGMTVLKRYVLRLFISLKYITANVVDRNNG
        GC  +   ++ GLT+  G  PI +++     T T+  R           K+A  +T ++R       K LLGMT+LKRYVLRLF+SLKYITANVVDRNNG
Subjt:  GCFLWLSILEQGLTETKGTTPIGSDQ--RGGTITKLFRAR-------AFKEAPRLTLVIRTGFWTFYKLLLGMTVLKRYVLRLFISLKYITANVVDRNNG

Query:  RIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIVNSLKNSGVKLILDDNVDD-AARSSY
        R+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIHADI KEIEKKGFKN TKIWAIVNSLKN+GVKLILD+NVDD AA+S+Y
Subjt:  RIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIVNSLKNSGVKLILDDNVDD-AARSSY

Query:  Q
        Q
Subjt:  Q

A0A5A7SM55 50S ribosomal protein L187.1e-5792.25Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGF+NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNSGVKLILDDNV-DDAARSSYQ
        AIVNSLKN+GVKLIL++NV DDAA+S+YQ
Subjt:  AIVNSLKNSGVKLILDDNV-DDAARSSYQ

A0A5D3C2Z2 50S ribosomal protein L181.9e-5793.02Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGF+NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNSGVKLILDDNV-DDAARSSYQ
        AIVNSLKN+GVKLILD+NV DDAA+S+YQ
Subjt:  AIVNSLKNSGVKLILDDNV-DDAARSSYQ

A0A6J1FXG0 uncharacterized protein LOC1114484606.4e-5893.75Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH DINKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNSGVKLILDDNVDDAARSSYQ
        AIVNSLKN+GVKLILD+N DDA+R SY+
Subjt:  AIVNSLKNSGVKLILDDNVDDAARSSYQ

A0A6J1JBQ5 uncharacterized protein LOC1114836108.4e-5893.75Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH DINKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNSGVKLILDDNVDDAARSSYQ
        AIVNSLKN+GVKLILD+N DDA R SY+
Subjt:  AIVNSLKNSGVKLILDDNVDDAARSSYQ

SwissProt top hitse value%identityAlignment
A9M3V0 50S ribosomal protein L183.9e-0428.7Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV

Query:  NSLKNSGV
         + + +G+
Subjt:  NSLKNSGV

Q5F5U3 50S ribosomal protein L183.9e-0428.7Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV

Query:  NSLKNSGV
         + + +G+
Subjt:  NSLKNSGV

Q5P316 50S ribosomal protein L183.0e-0430.28Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV
        LK   L +F +  +I A V+D +  R++A ASTVE  ++  L  G   N +AA VVG+++A R K  G+E               ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV

Query:  NSLKNSGVK
         + +  G+K
Subjt:  NSLKNSGVK

Q7DDT0 50S ribosomal protein L183.9e-0428.7Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV

Query:  NSLKNSGV
         + + +G+
Subjt:  NSLKNSGV

Q9JQQ6 50S ribosomal protein L183.9e-0428.7Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV

Query:  NSLKNSGV
         + + +G+
Subjt:  NSLKNSGV

Arabidopsis top hitse value%identityAlignment
AT3G45020.1 Ribosomal L18p/L5e family protein3.6e-5382.64Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYVLRLF+S+KYITANVVDRNNGRIV TASTVEH+IK SLECGR+CNAKAAA+VGEVLAMRLKV+GL+ GQGRGIHAD+ KEIEKKGFK+RTK+W
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNSGVKLILDDNVDD
        A++NSL+N+GV LILDD+ DD
Subjt:  AIVNSLKNSGVKLILDDNVDD

AT5G27820.1 Ribosomal L18p/L5e family protein9.0e-0425.23Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV
        LK YVL++  + K++ A V+      +  +AS+ E +++ +++  R  +  AA+ +G++L  RL +  +       +   + KE    G     K+ A++
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV

Query:  NSLKNSGVKLI
        +S++ +GVKL+
Subjt:  NSLKNSGVKLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACTCCACGGCAGCAACCTCCACACATAATGATTTCTGGTTGCTTTCTGTGGCTTTCTATCTTGGAGCAAGGCTTAACCGAAACGAAAGGCACCACTCCAATTGG
AAGTGACCAAAGAGGAGGAACGATTACAAAGCTCTTTAGAGCAAGAGCTTTTAAGGAGGCACCAAGACTAACATTGGTTATTCGAACAGGGTTTTGGACATTTTACAAAT
TACTGCTGGGAATGACAGTATTAAAGCGCTATGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCTAATGTAGTAGATAGAAACAATGGACGGATTGTTGCAACT
GCGTCCACAGTTGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCGTGTAATGCTAAGGCAGCAGCAGTTGTCGGAGAGGTGTTGGCTATGCGACTCAAAGTCGA
TGGTCTTGAACAGGGGCAAGGAAGAGGGATTCACGCAGACATAAACAAGGAAATCGAGAAGAAAGGCTTCAAAAACCGCACAAAAATCTGGGCTATAGTGAACTCTCTCA
AGAATAGCGGAGTTAAACTTATACTCGACGACAATGTCGATGATGCAGCTCGGTCGAGCTATCAATAA
mRNA sequenceShow/hide mRNA sequence
CAAAACTCTAAATCCAAACCTGAGTTTTAAACCGTCATTCCAGTCTAAAAAAAACACACAAAACCCTAATCGGCGGAGCTACTTCCTCTTCCTCAGCCCTCTCCTCACGC
AGCCATCGGTATCATCTTCTTCAATCTTCAACGTAGCCATCATCAAAACCAGCGGGCAAGTATAATCGAGCGTTGCATAATGGGCTCTGCAATAACCCGAAGTGCCCGCA
CCTACAATCCATGGCAACTCCACGGCAGCAACCTCCACACATAATGATTTCTGGTTGCTTTCTGTGGCTTTCTATCTTGGAGCAAGGCTTAACCGAAACGAAAGGCACCA
CTCCAATTGGAAGTGACCAAAGAGGAGGAACGATTACAAAGCTCTTTAGAGCAAGAGCTTTTAAGGAGGCACCAAGACTAACATTGGTTATTCGAACAGGGTTTTGGACA
TTTTACAAATTACTGCTGGGAATGACAGTATTAAAGCGCTATGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCTAATGTAGTAGATAGAAACAATGGACGGAT
TGTTGCAACTGCGTCCACAGTTGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCGTGTAATGCTAAGGCAGCAGCAGTTGTCGGAGAGGTGTTGGCTATGCGAC
TCAAAGTCGATGGTCTTGAACAGGGGCAAGGAAGAGGGATTCACGCAGACATAAACAAGGAAATCGAGAAGAAAGGCTTCAAAAACCGCACAAAAATCTGGGCTATAGTG
AACTCTCTCAAGAATAGCGGAGTTAAACTTATACTCGACGACAATGTCGATGATGCAGCTCGGTCGAGCTATCAATAAGCATCCTAACGCAATCTTATCGTCCTTCCCTG
GAAAAAAAGGGGGTGAGACTAGAGCTCAACCAGTCATCATGAAAGATTAGATGCTGCTAAATGGAAGGAACTATCAACTATCTTTATTAGTTGCAATCAGCTTAAACGTC
AGTCACTCATGATACTTGGAAGTTTATGAAGTAGAGACAACTTTTTATCTCCACTTCTAAAATTGTGGCATGGTGATAGTGATACCACCACCCACTTGGGCTAATGATGA
TGTTATCACAGTGAAATGGCCTTGTATGATTATTACACTTTACACTTTTTTTCTCCTTTTTCTTCCCGGTTTTACATAGTTTTCTTTTTCTCCCTTTTACTGGTTTTAAG
AGTTGTATAGAGATTAGCTTTGGCCCAAGAGGTTGATTTCATCCATCTGGCTGTCTCTTTCTTGCTCGTGCCCTC
Protein sequenceShow/hide protein sequence
MATPRQQPPHIMISGCFLWLSILEQGLTETKGTTPIGSDQRGGTITKLFRARAFKEAPRLTLVIRTGFWTFYKLLLGMTVLKRYVLRLFISLKYITANVVDRNNGRIVAT
ASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIVNSLKNSGVKLILDDNVDDAARSSYQ