; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G012570 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G012570
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionexosome complex component RRP41-like
Genome locationchr10:16812060..16815716
RNA-Seq ExpressionLsi10G012570
SyntenyLsi10G012570
Gene Ontology termsGO:0009845 - seed germination (biological process)
GO:0016075 - rRNA catabolic process (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570792.1 Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia]8.5e-9196.67Show/hide
Query:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATP T+TYSPSPT HKTRPPIFR+DDVDWVRPDGR+FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVC
        FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSV C
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVC

XP_022140702.1 exosome complex component RRP41-like [Momordica charantia]9.4e-9095Show/hide
Query:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATP T TYSPSPTIHKTRPPIFR+D+ DWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVC
        F+TPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVD+FALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSV C
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVC

XP_022944714.1 exosome complex component RRP41-like [Cucurbita moschata]3.2e-9096.11Show/hide
Query:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATP T TYSPSPT HKTRPPIFR+DDVDWVRPDGR+FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVC
        FSTPVRGQGSENKEFSSMLHKALEGAII ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSV C
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVC

XP_022986160.1 exosome complex component RRP41-like [Cucurbita maxima]3.8e-9197.22Show/hide
Query:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATP T+TYSPSPT HKTRPPIFR+DDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVC
        FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSV C
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVC

XP_023512894.1 exosome complex component RRP41-like isoform X1 [Cucurbita pepo subsp. pepo]7.2e-9096.11Show/hide
Query:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATP T+TYSPSPT  KTRPPIFR+DDVDWVRPDGR+FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVC
        FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSV C
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVC

TrEMBL top hitse value%identityAlignment
A0A0A0KEK6 Uncharacterized protein1.7e-8994.44Show/hide
Query:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPTT TYSPSPT+HKTRP +FRTDDV+WVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVC
        FSTPVRGQGSENK+FSSMLHK+LEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSV C
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVC

A0A1S3CKF3 exosome complex component RRP41-like7.7e-9095.58Show/hide
Query:  MAKKATP-TTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
        MAKKATP TT TYSPSPT+HKTRPP+FRTDDV+WVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
Subjt:  MAKKATP-TTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT

Query:  TFSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVC
        TFSTPVRGQGSENKEFSSMLHK+LEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSV C
Subjt:  TFSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVC

A0A6J1CHT0 exosome complex component RRP41-like4.5e-9095Show/hide
Query:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATP T TYSPSPTIHKTRPPIFR+D+ DWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVC
        F+TPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVD+FALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSV C
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVC

A0A6J1FYV1 exosome complex component RRP41-like1.6e-9096.11Show/hide
Query:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATP T TYSPSPT HKTRPPIFR+DDVDWVRPDGR+FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVC
        FSTPVRGQGSENKEFSSMLHKALEGAII ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSV C
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVC

A0A6J1JDA9 exosome complex component RRP41-like1.8e-9197.22Show/hide
Query:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATP T+TYSPSPT HKTRPPIFR+DDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVC
        FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSV C
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVC

SwissProt top hitse value%identityAlignment
A0RXU1 Exosome complex component Rrp417.3e-2138Show/hide
Query:  DVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK---EFSSMLHKALEG
        D + +R DGR   + R      G +N A+GSAY EFG+ K++  +FGPR+   K M+ ++ G L C    + FS   R + + ++   E S ++ +ALE 
Subjt:  DVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK---EFSSMLHKALEG

Query:  AIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS
        +++LE FP+T VDVF  VL++ G      ++ AS+ALADAGI + D+V++
Subjt:  AIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS

A2BKC0 Exosome complex component Rrp415.6e-2138.18Show/hide
Query:  RPPIFRTDDVDW----VRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK---
        +P + R ++ D     +R DGR   Q RP     G ++ A GSA  E+G T+VI +V+GPRE+  + +   D   + C      FST  R   +  +   
Subjt:  RPPIFRTDDVDW----VRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK---

Query:  EFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSV
        E S ++ +ALE  +I E +P+T +DV+  VL+S G      I+ ASLALADAGI + DLVA V+V
Subjt:  EFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSV

A2RVK7 Exosome complex component RRP41-like1.0e-7073.48Show/hide
Query:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MA K    T TYSP   + ++R PIF+  D+DW RPDGR FHQCRPA  +TGAV++ASGSAYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT 
Subjt:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVCM
        F++P  GQG+++KE+SSMLHKALEG I++ETFPKTTVDVFALVLESGGSDL V+ISCASLALADAGIM+YDL+ +VSV C+
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVCM

O26779 Exosome complex component Rrp419.6e-2140.41Show/hide
Query:  VRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSSMLHKALEGAIIL
        VR DGRAF + RP     G +  A GS+Y EFG  K++V+V+GPRE++ + +   D   + C  +   FS   R   G    + E S +  +AL  A+IL
Subjt:  VRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSSMLHKALEGAIIL

Query:  ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS
        E FP++ +DVF  VLE+ G      I+ AS+ALADAGI + D+V +
Subjt:  ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS

Q6P0I8 Exosome complex component MTR33.0e-2245.11Show/hide
Query:  RPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVSYTTFSTPVRG---QGSENKEFSSMLHKALEGAIILETFPKTTVDVF
        RP F R G V+ A GSAY E GNTK+I SV+GP+E+ ++       GRL C      FS   RG   QGSE ++ S+ L ++L   + L  +P++ +DV 
Subjt:  RPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVSYTTFSTPVRG---QGSENKEFSSMLHKALEGAIILETFPKTTVDVF

Query:  ALVLESGGSDLPVVISCASLALADAGIMLYDLV
         +VLE+ GS L   ++CAS+ALADAGI +YD+V
Subjt:  ALVLESGGSDLPVVISCASLALADAGIMLYDLV

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein9.2e-1130.87Show/hide
Query:  RPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKALEGAIILETFP
        R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++         +     P  GQ G   KE+  +L + ++   +L   P
Subjt:  RPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKALEGAIILETFP

Query:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVCMC
         TT  V   V+   GS LP  I+ A  AL DAGI +  L  +   +C C
Subjt:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVCMC

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein9.2e-1130.87Show/hide
Query:  RPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKALEGAIILETFP
        R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++         +     P  GQ G   KE+  +L + ++   +L   P
Subjt:  RPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKALEGAIILETFP

Query:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVCMC
         TT  V   V+   GS LP  I+ A  AL DAGI +  L  +   +C C
Subjt:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVCMC

AT3G61620.1 3'-5'-exoribonuclease family protein5.4e-1938.26Show/hide
Query:  VRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKALEGAII
        +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   + C  S   FST  R +      + E S ++ + +E  I+
Subjt:  VRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKALEGAII

Query:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVS
         E  P + +D+F  VL++ G      I+ A+LALADAGI + DL  S S
Subjt:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVS

AT3G61620.2 3'-5'-exoribonuclease family protein5.4e-1938.26Show/hide
Query:  VRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKALEGAII
        +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   + C  S   FST  R +      + E S ++ + +E  I+
Subjt:  VRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKALEGAII

Query:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVS
         E  P + +D+F  VL++ G      I+ A+LALADAGI + DL  S S
Subjt:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVS

AT4G27490.1 3'-5'-exoribonuclease family protein7.2e-7273.48Show/hide
Query:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MA K    T TYSP   + ++R PIF+  D+DW RPDGR FHQCRPA  +TGAV++ASGSAYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT 
Subjt:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVCM
        F++P  GQG+++KE+SSMLHKALEG I++ETFPKTTVDVFALVLESGGSDL V+ISCASLALADAGIM+YDL+ +VSV C+
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVCM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAAAAAGCGACACCAACTACCGCAACGTATTCTCCGTCTCCTACTATCCATAAAACCAGGCCACCCATCTTCAGAACCGACGACGTCGACTGGGTTCGCCCCGA
TGGCCGAGCCTTCCACCAATGCCGGCCTGCTTTTTTCAGGACTGGTGCTGTAAATGCTGCCTCAGGATCTGCTTATGCAGAGTTCGGTAATACCAAGGTCATTGTTTCTG
TATTTGGCCCTAGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGACTCAATTGTAGTGTCAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGGATCG
GAAAACAAGGAGTTCTCCTCAATGTTACATAAAGCTTTGGAAGGGGCAATAATATTGGAGACATTCCCCAAGACAACAGTAGATGTATTTGCCTTGGTGTTGGAATCTGG
AGGGAGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCCGACGCTGGAATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGGTATGCATGTGCACAT
TCTTAACTCTCCCGTTTCTACTATAA
mRNA sequenceShow/hide mRNA sequence
GAAAAAGACTAAAATAGCACTGATCTGGCGCCCTCACGGCTCACCCGCTTCCAAGGTTCAGTTTCTCAATCTTTGGCTCCTCGGCCTCCCCCAAACACAGACTCTTTTCA
ATTTCTTTGGATAGACTATTCTTTAAACAGATCGATCCTGGGTTTTTCTGTTCATTATCTCGACGCCCGCAGGAAATTTGTGACGGAGTCATTCATTGGCATTCTGAATG
GCCAAAAAAGCGACACCAACTACCGCAACGTATTCTCCGTCTCCTACTATCCATAAAACCAGGCCACCCATCTTCAGAACCGACGACGTCGACTGGGTTCGCCCCGATGG
CCGAGCCTTCCACCAATGCCGGCCTGCTTTTTTCAGGACTGGTGCTGTAAATGCTGCCTCAGGATCTGCTTATGCAGAGTTCGGTAATACCAAGGTCATTGTTTCTGTAT
TTGGCCCTAGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGACTCAATTGTAGTGTCAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGGATCGGAA
AACAAGGAGTTCTCCTCAATGTTACATAAAGCTTTGGAAGGGGCAATAATATTGGAGACATTCCCCAAGACAACAGTAGATGTATTTGCCTTGGTGTTGGAATCTGGAGG
GAGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCCGACGCTGGAATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGGTATGCATGTGCACATTCT
TAACTCTCCCGTTTCTACTATAATTAATTTTTTATTTCTAGGCTTTTAGCACTAAACCATTCTGCAATATGCATTTAATTTAGTTAAGTATATTACACGTTCTCTTTCCA
TTCAACAAGCTCCTTGATTGCAAACGGTTATGAATCTTGTTATCGAATTACCATTTTAAGTTCTGATACAAATACTCTCATTTGTTAACTAGAGCTGCTTTGGTAAGAAT
CTTCTTATTGATCCTATGTTGGAAGAGGAAAACTACCAAGATGGAAGTCTTATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACTATTACAGGCGAATG
GTCAACTGCTAAAATTAATGAGGGTATGCAGCTTTGCCTTGATGCTTCGTGTAAGCTTGTGGAGATCATGCGGTCATGCTTGAAGGAATCTGCGGCCACCATTTCAGAGG
AATAAACAGAGTAATGTCTAATGTGATCTCTTTTAGTTTTGATAGAGAAATTCCAACACCCCCCTCACCCTCCTCCGCCATCCCCAATTTTGATTAGAAAGAAAAATATG
TAAAATGTTTGGAAAATGGTTGATTGATTTGGATTTTGCATCAAAGTAAAAGTAGCGATTTTTCTTCCAAGGAAAAGGTTTTCATTTGGTTATCTTGGTTGGTGGCCGGC
CACAAGCAAAACAATTGCAATGGCTGAAGAAGCAAAGTTGACTTGAAACTATATTTGGGTTTAAAGTGTGTTGGTCAGTCAAGTCAAAGCCTTATCCTCCTACTTCTACG
GTTCTACCACGCCCCATTTTGAAGTCTATTCTTTCCTCAAAGTCAATTTTCATTATATGTATTTTTTTTTTTAAATGTTTAGTTATGATTCTTCTAAGTTAACATGAGAT
TTGATATAAGCAACATCCATTGATTATGGTTTAGAAACTATATATGCTGTGTTCTTTCTTTCTTTAAATCGACTATAAACAATTACTTCTGG
Protein sequenceShow/hide protein sequence
MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGS
ENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVVCMCTFLTLPFLL