; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G012760 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G012760
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPyridoxal 5'-phosphate synthase subunit PdxT
Genome locationchr10:17014061..17015913
RNA-Seq ExpressionLsi10G012760
SyntenyLsi10G012760
Gene Ontology termsGO:0006541 - glutamine metabolic process (biological process)
GO:0008614 - pyridoxine metabolic process (biological process)
GO:0042823 - pyridoxal phosphate biosynthetic process (biological process)
GO:0005829 - cytosol (cellular component)
GO:1903600 - glutaminase complex (cellular component)
GO:0004359 - glutaminase activity (molecular function)
InterPro domainsIPR002161 - Pyridoxal 5'-phosphate synthase subunit PdxT/SNO
IPR029062 - Class I glutamine amidotransferase-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035336.1 putative pyridoxal 5'-phosphate synthase subunit PDX2 [Cucumis melo var. makuwa]5.3e-7893.75Show/hide
Query:  GQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVA
        GQKTGGQGLVGGLDCTVHRNFFGSQLQSFE+ELSIPELVS+EGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNL S+SSGEGK+EK +ESKVIVA
Subjt:  GQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVA

Query:  VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSSIASIGVNNSRFERSKIDLPIFI
        VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSS+ SIGVNNSRFERSK DLPIFI
Subjt:  VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSSIASIGVNNSRFERSKIDLPIFI

XP_004145736.1 probable pyridoxal 5'-phosphate synthase subunit PDX2 [Cucumis sativus]1.2e-7794.38Show/hide
Query:  GQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVA
        GQKTGGQGLVGGLDCTVHRNFFGSQLQSFE+ELSIPELVS+EGGPETFRGVFIRAPAILDVGPEVQVLA CPVSSNSNL S+SSGEGK+EK SESKVIVA
Subjt:  GQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVA

Query:  VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSSIASIGVNNSRFERSKIDLPIFI
        VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSSI SIGVNNSRFERSK DLPIFI
Subjt:  VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSSIASIGVNNSRFERSKIDLPIFI

XP_008463934.1 PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX2 [Cucumis melo]5.3e-7893.75Show/hide
Query:  GQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVA
        GQKTGGQGLVGGLDCTVHRNFFGSQLQSFE+ELSIPELVS+EGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNL S+SSGEGK+EK +ESKVIVA
Subjt:  GQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVA

Query:  VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSSIASIGVNNSRFERSKIDLPIFI
        VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSS+ SIGVNNSRFERSK DLPIFI
Subjt:  VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSSIASIGVNNSRFERSKIDLPIFI

XP_023534477.1 probable pyridoxal 5'-phosphate synthase subunit PDX2 isoform X2 [Cucurbita pepo subsp. pepo]3.4e-7793.75Show/hide
Query:  GQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVA
        GQKTGGQ LVGGLDCTVHRNFFGSQLQSFE ELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNS L SNSSGEGKEEKG+E KVIVA
Subjt:  GQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVA

Query:  VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSSIASIGVNNSRFERSKIDLPIFI
        VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVE SSSSIASIGV+NSRFERS IDLPIF+
Subjt:  VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSSIASIGVNNSRFERSKIDLPIFI

XP_038900301.1 probable pyridoxal 5'-phosphate synthase subunit PDX2 [Benincasa hispida]1.8e-7895Show/hide
Query:  GQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVA
        GQKTGGQGLVGGLDCTVHRNFFGSQLQSFE ELSIPELVS+EGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNL SNSSGEGKEEK SE KVIVA
Subjt:  GQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVA

Query:  VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSSIASIGVNNSRFERSKIDLPIFI
        VRQGNLLATAFHPELTSDNRWHSYFLKM GDVEESSSSIASIGVNNS FERSK DLPIFI
Subjt:  VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSSIASIGVNNSRFERSKIDLPIFI

TrEMBL top hitse value%identityAlignment
A0A0A0KAR5 Glutaminase5.7e-7894.38Show/hide
Query:  GQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVA
        GQKTGGQGLVGGLDCTVHRNFFGSQLQSFE+ELSIPELVS+EGGPETFRGVFIRAPAILDVGPEVQVLA CPVSSNSNL S+SSGEGK+EK SESKVIVA
Subjt:  GQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVA

Query:  VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSSIASIGVNNSRFERSKIDLPIFI
        VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSSI SIGVNNSRFERSK DLPIFI
Subjt:  VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSSIASIGVNNSRFERSKIDLPIFI

A0A1S3CLW1 Glutaminase2.6e-7893.75Show/hide
Query:  GQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVA
        GQKTGGQGLVGGLDCTVHRNFFGSQLQSFE+ELSIPELVS+EGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNL S+SSGEGK+EK +ESKVIVA
Subjt:  GQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVA

Query:  VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSSIASIGVNNSRFERSKIDLPIFI
        VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSS+ SIGVNNSRFERSK DLPIFI
Subjt:  VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSSIASIGVNNSRFERSKIDLPIFI

A0A5D3CR96 Glutaminase2.6e-7893.75Show/hide
Query:  GQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVA
        GQKTGGQGLVGGLDCTVHRNFFGSQLQSFE+ELSIPELVS+EGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNL S+SSGEGK+EK +ESKVIVA
Subjt:  GQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVA

Query:  VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSSIASIGVNNSRFERSKIDLPIFI
        VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSS+ SIGVNNSRFERSK DLPIFI
Subjt:  VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSSIASIGVNNSRFERSKIDLPIFI

A0A6J1H276 Glutaminase4.8e-7793.12Show/hide
Query:  GQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVA
        GQKTGGQ LVGGLDCTVHRNFFGSQLQSFE ELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNS L SNSSGEGKEEKG+E KVIVA
Subjt:  GQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVA

Query:  VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSSIASIGVNNSRFERSKIDLPIFI
        VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVE SSSSIASIGV+N RFERS IDLPIF+
Subjt:  VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSSIASIGVNNSRFERSKIDLPIFI

A0A6J1H447 Glutaminase4.8e-7793.12Show/hide
Query:  GQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVA
        GQKTGGQ LVGGLDCTVHRNFFGSQLQSFE ELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNS L SNSSGEGKEEKG+E KVIVA
Subjt:  GQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVA

Query:  VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSSIASIGVNNSRFERSKIDLPIFI
        VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVE SSSSIASIGV+N RFERS IDLPIF+
Subjt:  VRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEESSSSIASIGVNNSRFERSKIDLPIFI

SwissProt top hitse value%identityAlignment
A0LUK9 Pyridoxal 5'-phosphate synthase subunit PdxT5.8e-1945.53Show/hide
Query:  GQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVAVRQGN
        GQ  +G LD TV RN FG Q+ SFEA++    L   +GGP   R VFIRAP + + GP+V+VL   P                   G  +  IVAVRQG 
Subjt:  GQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVAVRQGN

Query:  LLATAFHPELTSDNRWHSYFLKM
        +LATAFHPELT+D R H++F+ M
Subjt:  LLATAFHPELTSDNRWHSYFLKM

A6WCI3 Pyridoxal 5'-phosphate synthase subunit PdxT1.3e-1845.83Show/hide
Query:  QGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVAVRQGNL
        Q  +GGLD TV RN FG Q+ S+E +L +PE+  T GGP    G+FIRAP + + G EV+VLA                  +   G  +  IVAVRQG+L
Subjt:  QGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVAVRQGNL

Query:  LATAFHPELTSDNRWHSYFL
        LAT+FHPE+T D+R H YF+
Subjt:  LATAFHPELTSDNRWHSYFL

Q54J48 Probable pyridoxal 5'-phosphate synthase subunit pdx21.2e-2141.04Show/hide
Query:  GQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGP----ETFRGVFIRAPAILDV--GPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSE
        GQK GGQ L+GGLD  + RN+FG Q+ SFE ++++    S         E F  +FIRAPAILDV     V+++    V+              ++ G++
Subjt:  GQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGP----ETFRGVFIRAPAILDV--GPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSE

Query:  SKVIVAVRQGNLLATAFHPELTSDNRWHSYFLKM
         KVI AV+Q N++A+ FHPELT+DNR+H YF+++
Subjt:  SKVIVAVRQGNLLATAFHPELTSDNRWHSYFLKM

Q6AFB8 Pyridoxal 5'-phosphate synthase subunit PdxT5.8e-1946.28Show/hide
Query:  GQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVAVRQGN
        GQ  +GGLD  V RN FGSQ +SFE +LS P L     G E    VFIRAP +  VGP   VLA  P             +G+         +VAV Q N
Subjt:  GQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVAVRQGN

Query:  LLATAFHPELTSDNRWHSYFL
        LL TAFHPEL+ D R+H YFL
Subjt:  LLATAFHPELTSDNRWHSYFL

Q8LAD0 Probable pyridoxal 5'-phosphate synthase subunit PDX22.1e-5364.46Show/hide
Query:  MGQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKG-SESKVI
        +GQK GGQ LVGGLDCTVHRNFFGSQ+QSFEA++ +P+L S EGGPET+RGVFIRAPA+LDVGP+V+VLA  PV SN  L S+S+ + +EE    E+KVI
Subjt:  MGQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKG-SESKVI

Query:  VAVRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEE-----SSSSIASIGVNNSRFERSKIDLPIF
        VAV+QGNLLATAFHPELT+D RWHSYF+KM  ++E+     SS +I S+G  ++  E +K DLPIF
Subjt:  VAVRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEE-----SSSSIASIGVNNSRFERSKIDLPIF

Arabidopsis top hitse value%identityAlignment
AT5G60540.1 pyridoxine biosynthesis 21.5e-5464.46Show/hide
Query:  MGQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKG-SESKVI
        +GQK GGQ LVGGLDCTVHRNFFGSQ+QSFEA++ +P+L S EGGPET+RGVFIRAPA+LDVGP+V+VLA  PV SN  L S+S+ + +EE    E+KVI
Subjt:  MGQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKG-SESKVI

Query:  VAVRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEE-----SSSSIASIGVNNSRFERSKIDLPIF
        VAV+QGNLLATAFHPELT+D RWHSYF+KM  ++E+     SS +I S+G  ++  E +K DLPIF
Subjt:  VAVRQGNLLATAFHPELTSDNRWHSYFLKMAGDVEE-----SSSSIASIGVNNSRFERSKIDLPIF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACAGAAAACTGGTGGACAGGGGCTTGTTGGAGGCCTGGATTGTACCGTTCACAGAAACTTCTTTGGCAGTCAGCTTCAAAGCTTTGAGGCAGAGCTCTCAATACC
AGAGCTAGTGTCTACCGAAGGTGGTCCGGAAACATTCCGTGGAGTCTTCATTCGAGCTCCTGCGATTCTTGATGTGGGACCAGAAGTCCAAGTGCTGGCTCACTGCCCTG
TCTCTTCAAACTCTAACTTGCGTTCAAATTCCTCTGGTGAAGGCAAAGAGGAAAAAGGCTCAGAAAGTAAAGTGATTGTAGCCGTAAGGCAAGGGAACTTGCTCGCAACT
GCCTTCCATCCTGAATTAACATCAGATAATAGATGGCACAGTTACTTCCTGAAGATGGCTGGCGATGTTGAAGAATCCTCTAGTAGCATAGCAAGCATAGGAGTTAACAA
TTCGAGATTCGAAAGATCGAAGATCGACCTTCCGATTTTTATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGACAGAAAACTGGTGGACAGGGGCTTGTTGGAGGCCTGGATTGTACCGTTCACAGAAACTTCTTTGGCAGTCAGCTTCAAAGCTTTGAGGCAGAGCTCTCAATACC
AGAGCTAGTGTCTACCGAAGGTGGTCCGGAAACATTCCGTGGAGTCTTCATTCGAGCTCCTGCGATTCTTGATGTGGGACCAGAAGTCCAAGTGCTGGCTCACTGCCCTG
TCTCTTCAAACTCTAACTTGCGTTCAAATTCCTCTGGTGAAGGCAAAGAGGAAAAAGGCTCAGAAAGTAAAGTGATTGTAGCCGTAAGGCAAGGGAACTTGCTCGCAACT
GCCTTCCATCCTGAATTAACATCAGATAATAGATGGCACAGTTACTTCCTGAAGATGGCTGGCGATGTTGAAGAATCCTCTAGTAGCATAGCAAGCATAGGAGTTAACAA
TTCGAGATTCGAAAGATCGAAGATCGACCTTCCGATTTTTATTTAGTTTAAACCAAATGAACCCCTCGTCAACCCAAATCTACATTTCAAGTTTCACTCTAGGTTTAATC
TATCTATTCTTCAGTTTGCACCTTGTTTTATCTTCCTTGTCTTAAGTTACAGTATTCTTCTGCTGTATTAATCTCATTTTACTAGCACTGTGTGTAGGAGATGCTGTACA
TGGAGTTTAATTTGGAAAGATCCATCTCCTTTTGCACTGGATTAATCATTGTTGGAAAACAAACTGCAGTGTTAAATAATTCAAAGTTGTTAGGCTACTAGGAACTTAAT
AGTTCCTATTAATTTGAATACTTTTATGGATTTGACTTGGGGATTTTTTTAAATGCTACTAACATGCTGATCAGAACAAATTGC
Protein sequenceShow/hide protein sequence
MGQKTGGQGLVGGLDCTVHRNFFGSQLQSFEAELSIPELVSTEGGPETFRGVFIRAPAILDVGPEVQVLAHCPVSSNSNLRSNSSGEGKEEKGSESKVIVAVRQGNLLAT
AFHPELTSDNRWHSYFLKMAGDVEESSSSIASIGVNNSRFERSKIDLPIFI