CuGenDBv2

Gene ID	Lsi10G012770
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA polymerase epsilon subunit C
Genome location	chr10:17016910..17017778
RNA-Seq Expression	Lsi10G012770
Synteny	Lsi10G012770
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0005634 - nucleus (cellular component) GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domains	IPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain IPR009072 - Histone-fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035335.1 DNA polymerase epsilon subunit C [Cucumis melo var. makuwa]

4.7e-76

85.64

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Query:  MASSKKSSTEAKSKEAGTSKPAPKTKTHNNARKSDKDDSKKKKKKKK-KISTNNGSIKDNETLAISAP-ASASEEDD-ADEDRAETTSKKPNTSKSKKFK
        MASSKKSSTEAK KEAGTSKPAPK KTHNNAR SDK+ SKKKKKKKK  ISTNNGS+KDNE LA+S P  SASE+DD ADED+AETTS+K  TSKSKK K
Subjt:  MASSKKSSTEAKSKEAGTSKPAPKTKTHNNARKSDKDDSKKKKKKKK-KISTNNGSIKDNETLAISAP-ASASEEDD-ADEDRAETTSKKPNTSKSKKFK

Query:  RNHVKKEENGYA-AEEEEVEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNVSILYFDAAVYFPL
        RNH K+E+NGYA  EEEE EEKI KFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNVS+LYFDA VYFPL
Subjt:  RNHVKKEENGYA-AEEEEVEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNVSILYFDAAVYFPL

Query:  LL
        LL
Subjt:  LL

XP_004149539.2 chromatin accessibility complex protein 1 isoform X1 [Cucumis sativus]

3.4e-66

84.04

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Query:  MASSKKSSTEAKSKEAGTSKPAPKTKTHNNARKSDKDDSKKKKKKKK---KISTNNGSIKDNETLAISAP-ASASEE-DDADEDRAETTSKKPNTSKSKK
        MASSKKSSTEAKSKE GTSKP+PK KTHNNAR SDKD SKKKKKKKK    ISTNNGS+KDN  LA+SAP ASASE+ D ADED+AETTS+K NTSKSKK
Subjt:  MASSKKSSTEAKSKEAGTSKPAPKTKTHNNARKSDKDDSKKKKKKKK---KISTNNGSIKDNETLAISAP-ASASEE-DDADEDRAETTSKKPNTSKSKK

Query:  FKRNHVKKEENGYAAEEEEVEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV
         KRNH K+E+N YAA EEE EEKI KFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHL +V
Subjt:  FKRNHVKKEENGYAAEEEEVEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV

XP_008463933.1 PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo]

8.8e-67

84.49

Show/hide

Query:  MASSKKSSTEAKSKEAGTSKPAPKTKTHNNARKSDKDDSKKKKKKKK-KISTNNGSIKDNETLAISAP-ASASEEDD-ADEDRAETTSKKPNTSKSKKFK
        MASSKKSSTEAK KEAGTSKPAPK KTHNNAR SDK+ SKKKKKKKK  ISTNNGS+KDNE LA+S P  SASE+DD ADED+AETTS+K  TSKSKK K
Subjt:  MASSKKSSTEAKSKEAGTSKPAPKTKTHNNARKSDKDDSKKKKKKKK-KISTNNGSIKDNETLAISAP-ASASEEDD-ADEDRAETTSKKPNTSKSKKFK

Query:  RNHVKKEENGYA-AEEEEVEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV
        RNH K+E+NGYA  EEEE EEKI KFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHL +V
Subjt:  RNHVKKEENGYA-AEEEEVEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV

XP_031743864.1 DNA polymerase epsilon subunit 4 isoform X2 [Cucumis sativus]

9.8e-66

84.86

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Query:  MASSKKSSTEAKSKEAGTSKPAPKTKTHNNARKSDKDDSKKKKKKKK---KISTNNGSIKDNETLAISAP-ASASEE-DDADEDRAETTSKKPNTSKSKK
        MASSKKSSTEAKSKE GTSKP+PK KTHNNAR SDKD SKKKKKKKK    ISTNNGS+KDN  LA+SAP ASASE+ D ADED+AETTS+K NTSKSKK
Subjt:  MASSKKSSTEAKSKEAGTSKPAPKTKTHNNARKSDKDDSKKKKKKKK---KISTNNGSIKDNETLAISAP-ASASEE-DDADEDRAETTSKKPNTSKSKK

Query:  FKRNHVKKEENGYAAEEEEVEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHL
         KRNH K+E+N YAA EEE EEKI KFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHL
Subjt:  FKRNHVKKEENGYAAEEEEVEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHL

XP_038902902.1 DNA polymerase epsilon subunit C [Benincasa hispida]

2.2e-73

90.32

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Query:  MASSKKSSTEAKSKEAGTSKPAPKTKTHNNARKSDKDDSKKKKKKKKKISTNNGSIKDNETLAISAP--ASASEEDDADEDRAETTSKKPNTSKSKKFKR
        MASSKKSSTEAKSKEAGTSKP PKTKTHNNARKSDKDDS KKKKKKKKIST NGS+KDNE LA S P  ASASEE DADEDRAETTS KPNTSKSKK +R
Subjt:  MASSKKSSTEAKSKEAGTSKPAPKTKTHNNARKSDKDDSKKKKKKKKKISTNNGSIKDNETLAISAP--ASASEEDDADEDRAETTSKKPNTSKSKKFKR

Query:  NHVKKEENGYAA-EEEEVEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV
        NHVKKEENGYAA EEEE EEKI KFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHL +V
Subjt:  NHVKKEENGYAA-EEEEVEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KCQ2 CBFD_NFYB_HMF domain-containing protein

1.6e-66

84.04

Show/hide

Query:  MASSKKSSTEAKSKEAGTSKPAPKTKTHNNARKSDKDDSKKKKKKKK---KISTNNGSIKDNETLAISAP-ASASEE-DDADEDRAETTSKKPNTSKSKK
        MASSKKSSTEAKSKE GTSKP+PK KTHNNAR SDKD SKKKKKKKK    ISTNNGS+KDN  LA+SAP ASASE+ D ADED+AETTS+K NTSKSKK
Subjt:  MASSKKSSTEAKSKEAGTSKPAPKTKTHNNARKSDKDDSKKKKKKKK---KISTNNGSIKDNETLAISAP-ASASEE-DDADEDRAETTSKKPNTSKSKK

Query:  FKRNHVKKEENGYAAEEEEVEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV
         KRNH K+E+N YAA EEE EEKI KFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHL +V
Subjt:  FKRNHVKKEENGYAAEEEEVEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV

A0A1S3CKU7 DNA polymerase epsilon subunit C

4.3e-67

84.49

Show/hide

Query:  MASSKKSSTEAKSKEAGTSKPAPKTKTHNNARKSDKDDSKKKKKKKK-KISTNNGSIKDNETLAISAP-ASASEEDD-ADEDRAETTSKKPNTSKSKKFK
        MASSKKSSTEAK KEAGTSKPAPK KTHNNAR SDK+ SKKKKKKKK  ISTNNGS+KDNE LA+S P  SASE+DD ADED+AETTS+K  TSKSKK K
Subjt:  MASSKKSSTEAKSKEAGTSKPAPKTKTHNNARKSDKDDSKKKKKKKK-KISTNNGSIKDNETLAISAP-ASASEEDD-ADEDRAETTSKKPNTSKSKKFK

Query:  RNHVKKEENGYA-AEEEEVEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV
        RNH K+E+NGYA  EEEE EEKI KFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHL +V
Subjt:  RNHVKKEENGYA-AEEEEVEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV

A0A5A7T1L3 DNA polymerase epsilon subunit C

2.3e-76

85.64

Show/hide

Query:  MASSKKSSTEAKSKEAGTSKPAPKTKTHNNARKSDKDDSKKKKKKKK-KISTNNGSIKDNETLAISAP-ASASEEDD-ADEDRAETTSKKPNTSKSKKFK
        MASSKKSSTEAK KEAGTSKPAPK KTHNNAR SDK+ SKKKKKKKK  ISTNNGS+KDNE LA+S P  SASE+DD ADED+AETTS+K  TSKSKK K
Subjt:  MASSKKSSTEAKSKEAGTSKPAPKTKTHNNARKSDKDDSKKKKKKKK-KISTNNGSIKDNETLAISAP-ASASEEDD-ADEDRAETTSKKPNTSKSKKFK

Query:  RNHVKKEENGYA-AEEEEVEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNVSILYFDAAVYFPL
        RNH K+E+NGYA  EEEE EEKI KFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNVS+LYFDA VYFPL
Subjt:  RNHVKKEENGYA-AEEEEVEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNVSILYFDAAVYFPL

Query:  LL
        LL
Subjt:  LL

A0A6J1CGZ0 DNA polymerase epsilon subunit C

5.6e-59

76.41

Show/hide

Query:  MASSKKSSTEAKSKEAGTSKPA------PKTKTHNNARKSDKDDSKKKKKKKK---KISTNNGSIKDNETLAISAPASASEEDDADEDRAETTSKKPNTS
        MASSKKSSTEAKSKEAGTSK A       KTKT +NA KSDKD SKK   KKK   K   NNGS ++N+   ISAP SAS EDDADEDR ETTS+K N+S
Subjt:  MASSKKSSTEAKSKEAGTSKPA------PKTKTHNNARKSDKDDSKKKKKKKK---KISTNNGSIKDNETLAISAPASASEEDDADEDRAETTSKKPNTS

Query:  KSKKFKRNHVKKEENGYAAEEEE---VEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV
        KSKK KRNH KKEENGY  EEEE   VEEKI KFPMHRIKKI RDENSDLRINQEALFLVNKA+EMFLVQFCKDAYACCAQDRKKSLAYKHL +V
Subjt:  KSKKFKRNHVKKEENGYAAEEEE---VEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV

A0A6J1JF10 DNA polymerase epsilon subunit C-like isoform X1

1.4e-57

73.87

Show/hide

Query:  MASSKKSSTEAKSKEAGTSKPAPKTKTH-------NNARKSDKDDSKKKK-KKKKKISTNNGSIKDNETLAISAPASASEEDDADEDRAETTSKKPNTSK
        MASSKKSS+EAKSKEAGTSKPAPK KTH       NNARK DK  SKKKK        T+NGS+K+NE L ISAP       DA+EDR ETTSK PNTSK
Subjt:  MASSKKSSTEAKSKEAGTSKPAPKTKTH-------NNARKSDKDDSKKKK-KKKKKISTNNGSIKDNETLAISAPASASEEDDADEDRAETTSKKPNTSK

Query:  SKKFKRNHVKKEENGYAAE--------EEEVEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV
        SKK KRNH KKEENGYA E        EEE EEKI KFPM+RIKKIMRDENSDLRINQEALFLVNKA+EMFLVQFCKDAYACCAQDRKKSLAYKHL +V
Subjt:  SKKFKRNHVKKEENGYAAE--------EEEVEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV

SwissProt top hits

e value

%identity

Alignment

A6QQ14 DNA polymerase epsilon subunit 4

1.7e-04

30.77

Show/hide

Query:  KICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCN
        ++ + P+ R+K +++ +       QEA+F++ +A+E+F+    KDAY C  Q ++K+L  + L N
Subjt:  KICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCN

Q9CQ36 DNA polymerase epsilon subunit 4

1.7e-04

30.77

Show/hide

Query:  KICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCN
        ++ + P+ R+K +++ +       QEA+F++ +A+E+F+    KDAY C  Q ++K+L  + L N
Subjt:  KICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCN

Q9NR33 DNA polymerase epsilon subunit 4

1.7e-04

30.77

Show/hide

Query:  KICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCN
        ++ + P+ R+K +++ +       QEA+F++ +A+E+F+    KDAY C  Q ++K+L  + L N
Subjt:  KICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCN

Arabidopsis top hits

e value

%identity

Alignment

AT1G07980.1 nuclear factor Y, subunit C10

7.6e-08

30.6

Show/hide

Query:  MASSKKSSTEAKSKEAGTSKPAPKTKTHNNARKSDKDDSKKKKKKKKKISTNNGSIKDNETLAISAPASASEEDDADEDRAETTSKKPNTSKSKKFKRNH
        M SSKK   +    +   +K + ++K  + +R     +     KKK +I       + +E+ +  +   A   D+A +     + +    S     K + 
Subjt:  MASSKKSSTEAKSKEAGTSKPAPKTKTHNNARKSDKDDSKKKKKKKKKISTNNGSIKDNETLAISAPASASEEDDADEDRAETTSKKPNTSKSKKFKRNH

Query:  VKKEENGYAAEEEEVEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV
         ++E++G A      E+   KFPM+RI++IMR +NS  +I Q+A+FLVNKA+EMF+ +F ++AY    +D+KK + YKHL +V
Subjt:  VKKEENGYAAEEEEVEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTTCATCCAAAAAATCAAGTACTGAAGCCAAGAGCAAAGAAGCGGGAACCTCAAAGCCAGCCCCCAAAACCAAGACTCACAACAATGCCAGAAAATCCGATAAGGA
TGATTCAAAGAAGAAGAAGAAGAAGAAGAAGAAGATTAGCACCAACAATGGCTCCATCAAGGACAACGAAACCTTAGCTATTTCTGCTCCAGCCTCAGCCTCTGAGGAGG
ACGATGCCGATGAAGACAGAGCCGAAACCACTAGTAAAAAACCTAACACCTCGAAATCGAAGAAATTTAAACGGAACCATGTCAAGAAAGAAGAGAATGGTTATGCTGCC
GAAGAAGAAGAAGTCGAGGAGAAGATTTGTAAATTCCCTATGCATCGGATCAAGAAAATCATGAGGGACGAAAATTCTGATTTGCGCATCAATCAGGAAGCTTTGTTTCT
CGTCAACAAAGCTTCGGAGATGTTTCTCGTACAATTTTGCAAAGATGCATATGCGTGCTGTGCTCAGGATCGCAAGAAGTCTCTTGCTTACAAGCATCTATGTAATGTTT
CTATTCTCTATTTTGATGCTGCTGTCTATTTTCCTTTGTTGTTATAG

mRNA sequence

Show/hide mRNA sequence

AGTGTATGGGCCAGCCGAATAGGCCCAATGAAGGGCCCAAAATGGCAAACACACAGTAAAATCCGTGAAGAAAAAGAACCCAAAGTTCTAATTTCAGAAACAACCGAACT
TTAACAATGGCTTCATCCAAAAAATCAAGTACTGAAGCCAAGAGCAAAGAAGCGGGAACCTCAAAGCCAGCCCCCAAAACCAAGACTCACAACAATGCCAGAAAATCCGA
TAAGGATGATTCAAAGAAGAAGAAGAAGAAGAAGAAGAAGATTAGCACCAACAATGGCTCCATCAAGGACAACGAAACCTTAGCTATTTCTGCTCCAGCCTCAGCCTCTG
AGGAGGACGATGCCGATGAAGACAGAGCCGAAACCACTAGTAAAAAACCTAACACCTCGAAATCGAAGAAATTTAAACGGAACCATGTCAAGAAAGAAGAGAATGGTTAT
GCTGCCGAAGAAGAAGAAGTCGAGGAGAAGATTTGTAAATTCCCTATGCATCGGATCAAGAAAATCATGAGGGACGAAAATTCTGATTTGCGCATCAATCAGGAAGCTTT
GTTTCTCGTCAACAAAGCTTCGGAGATGTTTCTCGTACAATTTTGCAAAGATGCATATGCGTGCTGTGCTCAGGATCGCAAGAAGTCTCTTGCTTACAAGCATCTATGTA
ATGTTTCTATTCTCTATTTTGATGCTGCTGTCTATTTTCCTTTGTTGTTATAG

Protein sequence

Show/hide protein sequence

MASSKKSSTEAKSKEAGTSKPAPKTKTHNNARKSDKDDSKKKKKKKKKISTNNGSIKDNETLAISAPASASEEDDADEDRAETTSKKPNTSKSKKFKRNHVKKEENGYAA
EEEEVEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNVSILYFDAAVYFPLLL

Lsi10G012770 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome