; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G012790 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G012790
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein transport protein Sec61 subunit beta
Genome locationchr10:17027851..17028174
RNA-Seq ExpressionLsi10G012790
SyntenyLsi10G012790
Gene Ontology termsGO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation (biological process)
GO:0031204 - posttranslational protein targeting to membrane, translocation (biological process)
GO:0005784 - Sec61 translocon complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR016482 - Protein transport protein SecG/Sec61-beta/Sbh
IPR030671 - Protein transport Sec61-beta/Sbh


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149541.1 protein transport protein Sec61 subunit beta [Cucumis sativus]1.7e-4090.83Show/hide
Query:  MARGASQSQSSSS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKL
        MARGASQSQSS+S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA+ ST +VGGGSSGGGNMLRFYTDDAPGLKISPTVVLVM LCFIGFVTGLHVFGKL
Subjt:  MARGASQSQSSSS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKL

Query:  YRARSAAGV
        YRARSAAGV
Subjt:  YRARSAAGV

XP_008463929.1 PREDICTED: protein transport protein Sec61 subunit beta [Cucumis melo]2.2e-4090.83Show/hide
Query:  MARGASQSQSSSS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKL
        MARGASQSQSS+S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA  ST +VGGGSSGGGNMLRFYTDDAPGLKISPTVVLVM LCFIGFVTGLHVFGKL
Subjt:  MARGASQSQSSSS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKL

Query:  YRARSAAGV
        YRARSAAGV
Subjt:  YRARSAAGV

XP_022140347.1 protein transport protein Sec61 subunit beta [Momordica charantia]1.9e-3987.85Show/hide
Query:  MARGASQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYR
        MARG SQSQS+SSSTSRPGV APRGSAAATAGLRRRR+ ST +AGS  +VG GSSGGGNMLRFYTDDAPGLKISPTVVLVM LCFIGFVTGLHVFGKLYR
Subjt:  MARGASQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYR

Query:  ARSAAGV
        ARS AGV
Subjt:  ARSAAGV

XP_022958107.1 protein transport protein Sec61 subunit beta [Cucurbita moschata]1.5e-4190.65Show/hide
Query:  MARGASQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYR
        MARG SQSQS+SSSTSRPGVVAPRGSAAATAGLRRRR+GSTS AG+T +V GGSSGGGNMLRFYTDDAPGLKISPTVVLV+ LCFIGFVTGLHVFGKLYR
Subjt:  MARGASQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYR

Query:  ARSAAGV
        ARSAAGV
Subjt:  ARSAAGV

XP_038902812.1 protein transport protein Sec61 subunit beta [Benincasa hispida]3.1e-4293.46Show/hide
Query:  MARGASQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYR
        MARG SQSQS+SSSTSRPGVVAPRGSAAATAGLRRRR GSTSAA ST +VGGGSSGGGNMLRFYTDDAPGLKISPTVVLVM LCFIGFVTGLHVFGKLYR
Subjt:  MARGASQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYR

Query:  ARSAAGV
        ARSAAGV
Subjt:  ARSAAGV

TrEMBL top hitse value%identityAlignment
A0A0A0KHR1 Protein transport protein Sec61 subunit beta8.3e-4190.83Show/hide
Query:  MARGASQSQSSSS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKL
        MARGASQSQSS+S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA+ ST +VGGGSSGGGNMLRFYTDDAPGLKISPTVVLVM LCFIGFVTGLHVFGKL
Subjt:  MARGASQSQSSSS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKL

Query:  YRARSAAGV
        YRARSAAGV
Subjt:  YRARSAAGV

A0A1S3CKE5 Protein transport protein Sec61 subunit beta1.1e-4090.83Show/hide
Query:  MARGASQSQSSSS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKL
        MARGASQSQSS+S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA  ST +VGGGSSGGGNMLRFYTDDAPGLKISPTVVLVM LCFIGFVTGLHVFGKL
Subjt:  MARGASQSQSSSS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKL

Query:  YRARSAAGV
        YRARSAAGV
Subjt:  YRARSAAGV

A0A5D3CTD4 Protein transport protein Sec61 subunit beta1.1e-4090.83Show/hide
Query:  MARGASQSQSSSS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKL
        MARGASQSQSS+S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA  ST +VGGGSSGGGNMLRFYTDDAPGLKISPTVVLVM LCFIGFVTGLHVFGKL
Subjt:  MARGASQSQSSSS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKL

Query:  YRARSAAGV
        YRARSAAGV
Subjt:  YRARSAAGV

A0A6J1H102 Protein transport protein Sec61 subunit beta7.5e-4290.65Show/hide
Query:  MARGASQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYR
        MARG SQSQS+SSSTSRPGVVAPRGSAAATAGLRRRR+GSTS AG+T +V GGSSGGGNMLRFYTDDAPGLKISPTVVLV+ LCFIGFVTGLHVFGKLYR
Subjt:  MARGASQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYR

Query:  ARSAAGV
        ARSAAGV
Subjt:  ARSAAGV

A0A6J1JZ65 Protein transport protein Sec61 subunit beta7.5e-4290.65Show/hide
Query:  MARGASQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYR
        MARG SQSQS+SSSTSRPGVVAPRGSAAATAGLRRRR+GSTS AG+T +V GGSSGGGNMLRFYTDDAPGLKISPTVVLV+ LCFIGFVTGLHVFGKLYR
Subjt:  MARGASQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYR

Query:  ARSAAGV
        ARSAAGV
Subjt:  ARSAAGV

SwissProt top hitse value%identityAlignment
A8I6P9 Protein transport protein Sec61 subunit beta3.7e-0641.24Show/hide
Query:  MARGASQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGK
        MA   SQ+ +  +   R    AP G+A A   LRRR +  +  +G+T             + FYTDD PG K+SP VV+ M L FI FVT LHV GK
Subjt:  MARGASQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGK

P38389 Protein transport protein Sec61 subunit beta1.2e-1566.67Show/hide
Query:  RGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGG--GNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLY
        RGSAAATA +RRR+   TS AG     GGG+SGG  G+ML+FYTDDAPGLKISP VVL+M + FI FV  LHV GKLY
Subjt:  RGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGG--GNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLY

P60467 Protein transport protein Sec61 subunit beta3.7e-0642.71Show/hide
Query:  SQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYRA
        S +   SS  S    VA R +A +T   R+     T +AG T      S+G G M RFYT+D+PGLK+ P  VLVM L FI  V  LH++GK  R+
Subjt:  SQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYRA

P60468 Protein transport protein Sec61 subunit beta3.7e-0642.71Show/hide
Query:  SQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYRA
        S +   SS  S    VA R +A +T   R+     T +AG T      S+G G M RFYT+D+PGLK+ P  VLVM L FI  V  LH++GK  R+
Subjt:  SQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYRA

Q9CQS8 Protein transport protein Sec61 subunit beta3.7e-0642.71Show/hide
Query:  SQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYRA
        S +   SS  S    VA R +A +T   R+     T +AG T      S+G G M RFYT+D+PGLK+ P  VLVM L FI  V  LH++GK  R+
Subjt:  SQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYRA

Arabidopsis top hitse value%identityAlignment
AT2G45070.1 Preprotein translocase Sec, Sec61-beta subunit protein8.2e-1766.67Show/hide
Query:  RGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGG--GNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLY
        RGSAAATA +RRR+   TS AG     GGG+SGG  G+ML+FYTDDAPGLKISP VVL+M + FI FV  LHV GKLY
Subjt:  RGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGG--GNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLY

AT2G45070.2 Preprotein translocase Sec, Sec61-beta subunit protein8.2e-1766.67Show/hide
Query:  RGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGG--GNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLY
        RGSAAATA +RRR+   TS AG     GGG+SGG  G+ML+FYTDDAPGLKISP VVL+M + FI FV  LHV GKLY
Subjt:  RGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGG--GNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLY

AT2G45070.3 Preprotein translocase Sec, Sec61-beta subunit protein8.2e-1766.67Show/hide
Query:  RGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGG--GNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLY
        RGSAAATA +RRR+   TS AG     GGG+SGG  G+ML+FYTDDAPGLKISP VVL+M + FI FV  LHV GKLY
Subjt:  RGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGG--GNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLY

AT2G45070.4 Preprotein translocase Sec, Sec61-beta subunit protein8.2e-1766.67Show/hide
Query:  RGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGG--GNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLY
        RGSAAATA +RRR+   TS AG     GGG+SGG  G+ML+FYTDDAPGLKISP VVL+M + FI FV  LHV GKLY
Subjt:  RGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGG--GNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLY

AT5G60460.1 Preprotein translocase Sec, Sec61-beta subunit protein3.8e-3069.37Show/hide
Query:  MARGASQSQ---SSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGS---SGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHV
        MARG+SQSQ   S+ SST+RPG+ APRGSAAATAG+RRRR+G      S    GGGS   SG  NMLRFYTDDAPGLKISPTVVL+M LCFIGFVT LHV
Subjt:  MARGASQSQ---SSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGS---SGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHV

Query:  FGKLYRARSAA
        FGKLY  +S +
Subjt:  FGKLYRARSAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAGAGGTGCTTCTCAATCCCAATCCTCATCCTCCTCTACCTCCAGACCCGGCGTCGTCGCTCCTCGCGGCTCCGCGGCGGCGACAGCTGGCCTCCGCCGCCGCCG
TATCGGCTCCACTTCTGCTGCCGGCTCTACTGCAATCGTAGGTGGCGGATCAAGCGGCGGCGGAAACATGCTGAGATTCTACACTGACGATGCTCCAGGCTTGAAGATTT
CTCCCACCGTTGTCCTCGTCATGTGCCTCTGCTTCATCGGCTTCGTCACCGGCCTCCACGTCTTTGGTAAGCTCTATCGCGCGCGATCCGCCGCTGGAGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAGAGGTGCTTCTCAATCCCAATCCTCATCCTCCTCTACCTCCAGACCCGGCGTCGTCGCTCCTCGCGGCTCCGCGGCGGCGACAGCTGGCCTCCGCCGCCGCCG
TATCGGCTCCACTTCTGCTGCCGGCTCTACTGCAATCGTAGGTGGCGGATCAAGCGGCGGCGGAAACATGCTGAGATTCTACACTGACGATGCTCCAGGCTTGAAGATTT
CTCCCACCGTTGTCCTCGTCATGTGCCTCTGCTTCATCGGCTTCGTCACCGGCCTCCACGTCTTTGGTAAGCTCTATCGCGCGCGATCCGCCGCTGGAGTCTAA
Protein sequenceShow/hide protein sequence
MARGASQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYRARSAAGV