; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G013090 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G013090
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDDB1- and CUL4-associated factor 8
Genome locationchr10:17287546..17288975
RNA-Seq ExpressionLsi10G013090
SyntenyLsi10G013090
Gene Ontology termsGO:0005737 - cytoplasm (cellular component)
GO:0080008 - Cul4-RING E3 ubiquitin ligase complex (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR036322 - WD40-repeat-containing domain superfamily
IPR045151 - DDB1- and CUL4-associated factor 8-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022986111.1 DDB1- and CUL4-associated factor 8 [Cucurbita maxima]2.9e-6591.73Show/hide
Query:  MWEKFSRMNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG
        MWEK SRMNSCY GM+CELAEIC+REIGI RSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG
Subjt:  MWEKFSRMNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG

Query:  HLDNIFQTKIMPFTDDQKIVTSAADGKVILNNI
        HLDNIFQTKIMPFT+D+KIVTSAADGKV L  +
Subjt:  HLDNIFQTKIMPFTDDQKIVTSAADGKVILNNI

XP_023511970.1 DDB1- and CUL4-associated factor 8 [Cucurbita pepo subsp. pepo]3.8e-6591.73Show/hide
Query:  MWEKFSRMNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG
        MWEK SRMNSCY GM+CELAEIC+REIG  RSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG
Subjt:  MWEKFSRMNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG

Query:  HLDNIFQTKIMPFTDDQKIVTSAADGKVILNNI
        HLDNIFQTKIMPFT+DQKIVTSAADGKV L  +
Subjt:  HLDNIFQTKIMPFTDDQKIVTSAADGKVILNNI

XP_038902691.1 DDB1- and CUL4-associated factor 8 isoform X1 [Benincasa hispida]2.0e-6693.23Show/hide
Query:  MWEKFSRMNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG
        MW+KFSRMNSCYEG NCEL EICNREIGI RSRNFSRRF ASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG
Subjt:  MWEKFSRMNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG

Query:  HLDNIFQTKIMPFTDDQKIVTSAADGKVILNNI
        HLDNIFQTKIMPFTDDQKIVTSAADGKV L  +
Subjt:  HLDNIFQTKIMPFTDDQKIVTSAADGKVILNNI

XP_038902693.1 DDB1- and CUL4-associated factor 8 isoform X2 [Benincasa hispida]2.0e-6693.23Show/hide
Query:  MWEKFSRMNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG
        MW+KFSRMNSCYEG NCEL EICNREIGI RSRNFSRRF ASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG
Subjt:  MWEKFSRMNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG

Query:  HLDNIFQTKIMPFTDDQKIVTSAADGKVILNNI
        HLDNIFQTKIMPFTDDQKIVTSAADGKV L  +
Subjt:  HLDNIFQTKIMPFTDDQKIVTSAADGKVILNNI

XP_038902694.1 DDB1- and CUL4-associated factor 8 isoform X3 [Benincasa hispida]2.0e-6693.23Show/hide
Query:  MWEKFSRMNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG
        MW+KFSRMNSCYEG NCEL EICNREIGI RSRNFSRRF ASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG
Subjt:  MWEKFSRMNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG

Query:  HLDNIFQTKIMPFTDDQKIVTSAADGKVILNNI
        HLDNIFQTKIMPFTDDQKIVTSAADGKV L  +
Subjt:  HLDNIFQTKIMPFTDDQKIVTSAADGKVILNNI

TrEMBL top hitse value%identityAlignment
A0A0A0KC69 Uncharacterized protein1.3e-5888.89Show/hide
Query:  MNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQ
        MNSCY GMN + AEICNR+IGIV S NFSRRF ASEIIVKQLNLE KLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNS+RFSYPSGHLDNIFQ
Subjt:  MNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQ

Query:  TKIMPFTDDQKIVTSAADGKVILNNI
        TKIMPFTDDQKIVTSAADGKV L  +
Subjt:  TKIMPFTDDQKIVTSAADGKVILNNI

A0A1S3CLR9 DDB1- and CUL4-associated factor 8 isoform X15.4e-5787.3Show/hide
Query:  MNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQ
        MNSCY+GMN + AEICNREIGIV SRNFSRRF ASE  VKQLNLE KLNGH+GCVNAVEFNSTGDLLVSGSDDCKVILWDWA NS+RFSYPSGHLDNIFQ
Subjt:  MNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQ

Query:  TKIMPFTDDQKIVTSAADGKVILNNI
        TKIMPFTDDQKIVTSAADGKV L  +
Subjt:  TKIMPFTDDQKIVTSAADGKVILNNI

A0A6J1CXN7 DDB1- and CUL4-associated factor 89.9e-5984.96Show/hide
Query:  MWEKFSRMNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG
        MW+K SRM SCYEGMNC  AEI +REIGI R RNFSRRFSAS+IIV+QLNLE KLNGHDGCVNAVEFNSTGDLLVSGSDD KVILWDWARNS RFSYPSG
Subjt:  MWEKFSRMNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG

Query:  HLDNIFQTKIMPFTDDQKIVTSAADGKVILNNI
        HLDNIFQTKIMP +DDQKIVTSAADGKV L  +
Subjt:  HLDNIFQTKIMPFTDDQKIVTSAADGKVILNNI

A0A6J1FWZ1 DDB1- and CUL4-associated factor 83.2e-6591.73Show/hide
Query:  MWEKFSRMNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG
        MWEK SRMNSCY GM+CELAEIC+REIG  RSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG
Subjt:  MWEKFSRMNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG

Query:  HLDNIFQTKIMPFTDDQKIVTSAADGKVILNNI
        HLDNIFQTKIMPFT+DQKIVTSAADGKV L  +
Subjt:  HLDNIFQTKIMPFTDDQKIVTSAADGKVILNNI

A0A6J1JA63 DDB1- and CUL4-associated factor 81.4e-6591.73Show/hide
Query:  MWEKFSRMNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG
        MWEK SRMNSCY GM+CELAEIC+REIGI RSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG
Subjt:  MWEKFSRMNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG

Query:  HLDNIFQTKIMPFTDDQKIVTSAADGKVILNNI
        HLDNIFQTKIMPFT+D+KIVTSAADGKV L  +
Subjt:  HLDNIFQTKIMPFTDDQKIVTSAADGKVILNNI

SwissProt top hitse value%identityAlignment
Q5R448 DDB1- and CUL4-associated factor 82.1e-1839.09Show/hide
Query:  LAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQK
        L  +  RE+G   S  F      + + V++  L+  L GH GCVN + FN  G  L SGSDD KV++WDW R      + SGH  N+FQ K +P + D  
Subjt:  LAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQK

Query:  IVTSAADGKV
        +   A DG+V
Subjt:  IVTSAADGKV

Q5TAQ9 DDB1- and CUL4-associated factor 82.1e-1839.09Show/hide
Query:  LAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQK
        L  +  RE+G   S  F      + + V++  L+  L GH GCVN + FN  G  L SGSDD KV++WDW R      + SGH  N+FQ K +P + D  
Subjt:  LAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQK

Query:  IVTSAADGKV
        +   A DG+V
Subjt:  IVTSAADGKV

Q80ZK9 WD and tetratricopeptide repeats protein 18.7e-2036.89Show/hide
Query:  EICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIV
        ++  R++    + +F RR+  ++  +++L LE +L GH GCVN +E+N  GDLL SGSDD   I+WD   + +  S  +GH  NIF  K +P   D+ ++
Subjt:  EICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIV

Query:  TSAADGKVILNNI---NCVHWF
        T AAD KV ++++     +H F
Subjt:  TSAADGKVILNNI---NCVHWF

Q8N5D0 WD and tetratricopeptide repeats protein 16.7e-2037.7Show/hide
Query:  EICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIV
        ++  R+I    + +F RR+  ++  +++L LE +L GH GCVN +E+N  GDLL SGSDD   I+WD   + +  S  +GH  NIF  K +P   D+ ++
Subjt:  EICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIV

Query:  TSAADGKVILNNI---NCVHWF
        T AAD KV ++++     +H F
Subjt:  TSAADGKVILNNI---NCVHWF

Q8N7N5 DDB1- and CUL4-associated factor 82.1e-1839.09Show/hide
Query:  LAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQK
        L  +  RE+G   S  F      + + V++  L+  L GH GCVN + FN  G  L SGSDD KV++WDW R      + SGH  N+FQ K +P + D  
Subjt:  LAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQK

Query:  IVTSAADGKV
        +   A DG+V
Subjt:  IVTSAADGKV

Arabidopsis top hitse value%identityAlignment
AT3G45620.1 Transducin/WD40 repeat-like superfamily protein2.8e-3763.72Show/hide
Query:  EICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIV
        EI NREIG       SRR SASE  VK+L+L  KLNGH+GCVNAVEFNSTGD+LVSGSDD +++LW+W   S + SYPSGH +N+FQTK +PFTDD+ I+
Subjt:  EICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIV

Query:  TSAADGKVILNNI
        TS ADG+V L  I
Subjt:  TSAADGKVILNNI

AT3G45620.2 Transducin/WD40 repeat-like superfamily protein1.6e-3248.98Show/hide
Query:  EICNREIGIVRSRNFSRRFSASEI----------------------------------IVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILW
        EI NREIG       SRR SASE                                    VK+L+L  KLNGH+GCVNAVEFNSTGD+LVSGSDD +++LW
Subjt:  EICNREIGIVRSRNFSRRFSASEI----------------------------------IVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILW

Query:  DWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGKVILNNI
        +W   S + SYPSGH +N+FQTK +PFTDD+ I+TS ADG+V L  I
Subjt:  DWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGKVILNNI

AT4G35140.1 Transducin/WD40 repeat-like superfamily protein7.5e-3552.34Show/hide
Query:  MWEKFSRMNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG
        M EK  R  S + G++  + +   RE+G + SRNFS RFSASE +V +L + KKL  H GCVN V FN+ GD+L+SGSDD +V+LWDW   + + S+ SG
Subjt:  MWEKFSRMNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSG

Query:  HLDNIFQTKIMPFTDDQKIVTSAADGKV
        H +N+FQ K MPF+DD+ IVT AADG V
Subjt:  HLDNIFQTKIMPFTDDQKIVTSAADGKV

AT4G38480.1 Transducin/WD40 repeat-like superfamily protein4.1e-3354.78Show/hide
Query:  LAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQK
        +  +  RE+G++ +R+FS RFSASE ++++L L+KKL+ H GCVN V FN+ GD+L+SGSDD +VILWDW   S + S+ SGH +NIFQ K MPF+DD+ 
Subjt:  LAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQK

Query:  IVTSAADGKVILNNI
        IVTSAAD +V  + I
Subjt:  IVTSAADGKVILNNI

AT5G10940.1 transducin family protein / WD-40 repeat family protein1.3e-1840.59Show/hide
Query:  SRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGKVILN
        S    +R      +V++L+ E++L GH GCVNA+ +NS G LL+SGSDD ++ +W+++      S  +GH  NIF TK +P T D+ +V+ A D +V L 
Subjt:  SRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKIMPFTDDQKIVTSAADGKVILN

Query:  N
        N
Subjt:  N


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGAAAAATTTTCTCGGATGAATTCTTGTTACGAAGGGATGAACTGTGAGTTAGCTGAAATTTGCAATAGAGAAATCGGTATTGTTCGATCGAGAAACTTCTCTCG
CAGATTCAGTGCTTCAGAGATTATTGTAAAGCAGCTGAATCTTGAAAAGAAGTTAAATGGTCACGATGGCTGTGTAAACGCCGTAGAGTTTAACTCCACTGGCGATCTTC
TTGTGTCCGGTTCCGATGACTGCAAAGTCATATTGTGGGATTGGGCAAGAAATTCTGAGAGGTTTTCGTATCCTTCTGGTCACCTCGACAACATATTCCAAACCAAAATT
ATGCCGTTCACTGATGATCAGAAAATAGTAACTTCAGCTGCAGATGGAAAGGTGATTTTAAATAATATAAACTGTGTTCATTGGTTTTACCCTCTTTTTTTGCAAAAAAT
GATAAATTATTCGAGGGGCTGGAATAATGTGGTGGGCGTCCTCAGTGATATGCAACTTTCTTTACCATTAGCTTCCATGCAAAAGTCACTATTATATCATGAATTACATT
CTTTCTCATGTCTCCAGCATCGTTTTTTGGTCTATCTTTTGCCTATATTCCCACTCCAGGTTGAG
mRNA sequenceShow/hide mRNA sequence
AAAAGACTGAAATCCATGTGGGAAAAATTTTCTCGGATGAATTCTTGTTACGAAGGGATGAACTGTGAGTTAGCTGAAATTTGCAATAGAGAAATCGGTATTGTTCGATC
GAGAAACTTCTCTCGCAGATTCAGTGCTTCAGAGATTATTGTAAAGCAGCTGAATCTTGAAAAGAAGTTAAATGGTCACGATGGCTGTGTAAACGCCGTAGAGTTTAACT
CCACTGGCGATCTTCTTGTGTCCGGTTCCGATGACTGCAAAGTCATATTGTGGGATTGGGCAAGAAATTCTGAGAGGTTTTCGTATCCTTCTGGTCACCTCGACAACATA
TTCCAAACCAAAATTATGCCGTTCACTGATGATCAGAAAATAGTAACTTCAGCTGCAGATGGAAAGGTGATTTTAAATAATATAAACTGTGTTCATTGGTTTTACCCTCT
TTTTTTGCAAAAAATGATAAATTATTCGAGGGGCTGGAATAATGTGGTGGGCGTCCTCAGTGATATGCAACTTTCTTTACCATTAGCTTCCATGCAAAAGTCACTATTAT
ATCATGAATTACATTCTTTCTCATGTCTCCAGCATCGTTTTTTGGTCTATCTTTTGCCTATATTCCCACTCCAGGTTGAG
Protein sequenceShow/hide protein sequence
MWEKFSRMNSCYEGMNCELAEICNREIGIVRSRNFSRRFSASEIIVKQLNLEKKLNGHDGCVNAVEFNSTGDLLVSGSDDCKVILWDWARNSERFSYPSGHLDNIFQTKI
MPFTDDQKIVTSAADGKVILNNINCVHWFYPLFLQKMINYSRGWNNVVGVLSDMQLSLPLASMQKSLLYHELHSFSCLQHRFLVYLLPIFPLQVE