CuGenDBv2

Gene ID	Lsi10G013310
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Zinc finger protein CONSTANS-LIKE 1 isoform X1
Genome location	chr10:17522411..17525582
RNA-Seq Expression	Lsi10G013310
Synteny	Lsi10G013310
Gene Ontology terms	GO:0009909 - regulation of flower development (biological process) GO:0005634 - nucleus (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035270.1 zinc finger protein CONSTANS-LIKE 1 isoform X1 [Cucumis melo var. makuwa]

8.4e-81

79.52

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Query:  MAFSPFLFAASHSSADLAGVDFE-WLPDSSIKLWNSELSDSCGDGSPTSPPQPLTIPPSNNNFSLHQSFPLLN-PSLQS-NDLFLQRTFSSS-SPPPSAT
        MAFSPFL AASHSSAD+AGVDF+ WLPDSSIKLWNSE SDSCGDGSP SPP+PL I PS NNF LHQSFPLLN  SLQS ND FLQRTFSSS SPPPSA 
Subjt:  MAFSPFLFAASHSSADLAGVDFE-WLPDSSIKLWNSELSDSCGDGSPTSPPQPLTIPPSNNNFSLHQSFPLLN-PSLQS-NDLFLQRTFSSS-SPPPSAT

Query:  TNTLVNRLLFPSGDFQKKKNNQRA--ESPASCESSIT-IEGMSRACRKSLADSRPRIRGRFARYNDDVVKNYPMQWSQGREEEEQQQEENNCGDNWIKYF
         +  +NR LFP+GDFQ+KKNN     ESP SCESSIT IEGMSRACRKSLADSRPRIRGRFARYND+VVKNYP+QW+  REEE+QQ+E N+CGDNWIKYF
Subjt:  TNTLVNRLLFPSGDFQKKKNNQRA--ESPASCESSIT-IEGMSRACRKSLADSRPRIRGRFARYNDDVVKNYPMQWSQGREEEEQQQEENNCGDNWIKYF

Query:  IDAYSSNLIP
        ID YS+NLIP
Subjt:  IDAYSSNLIP

XP_008463852.1 PREDICTED: zinc finger protein CONSTANS-LIKE 1 isoform X1 [Cucumis melo]

6.3e-76

69.29

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Query:  MAFSPFLFAASHSSADLAGVDFE-WLPDSSIKLWNSELSDSCGDGSPTSPPQPLTIPPSNNNFSLHQSFPLLN-PSLQS-NDLFLQRTFSSS-SPPPSAT
        MAFSPFL AASHSSAD+AGVDF+ WLPDSSIKLWNSE SDSCGDGSP SPP+PL I PS NNF LHQSFPLLN  SLQS ND FLQRTFSSS SPPPSA 
Subjt:  MAFSPFLFAASHSSADLAGVDFE-WLPDSSIKLWNSELSDSCGDGSPTSPPQPLTIPPSNNNFSLHQSFPLLN-PSLQS-NDLFLQRTFSSS-SPPPSAT

Query:  TNTLVNRLLFPSGDFQKKKNNQRA--ESPASCESSIT-IEGMSR-------------------------------ACRKSLADSRPRIRGRFARYNDDVV
         +  +NR LFP+GDFQ+KKNN     ESP SCESSIT IEGMSR                               ACRKSLADSRPRIRGRFARYND+VV
Subjt:  TNTLVNRLLFPSGDFQKKKNNQRA--ESPASCESSIT-IEGMSR-------------------------------ACRKSLADSRPRIRGRFARYNDDVV

Query:  KNYPMQWSQGREEEEQQQEENNCGDNWIKYFIDAYSSNLIP
        KNYP+QW+  REEE+QQ+E N+CGDNWIKYFID YS+NLIP
Subjt:  KNYPMQWSQGREEEEQQQEENNCGDNWIKYFIDAYSSNLIP

XP_008463853.1 PREDICTED: zinc finger protein CONSTANS-LIKE 1 isoform X2 [Cucumis melo]

7.4e-77

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Query:  MAFSPFLFAASHSSADLAGVDFE-WLPDSSIKLWNSELSDSCGDGSPTSPPQPLTIPPSNNNFSLHQSFPLLN-PSLQS-NDLFLQRTFSSS-SPPPSAT
        MAFSPFL AASHSSAD+AGVDF+ WLPDSSIKLWNSE SDSCGDGSP SPP+PL I PS NNF LHQSFPLLN  SLQS ND FLQRTFSSS SPPPSA 
Subjt:  MAFSPFLFAASHSSADLAGVDFE-WLPDSSIKLWNSELSDSCGDGSPTSPPQPLTIPPSNNNFSLHQSFPLLN-PSLQS-NDLFLQRTFSSS-SPPPSAT

Query:  TNTLVNRLLFPSGDFQKKKNNQRA-ESPASCESSIT-IEGMSR-------------------------------ACRKSLADSRPRIRGRFARYNDDVVK
         +  +NR LFP+GDFQKK NN+R  ESP SCESSIT IEGMSR                               ACRKSLADSRPRIRGRFARYND+VVK
Subjt:  TNTLVNRLLFPSGDFQKKKNNQRA-ESPASCESSIT-IEGMSR-------------------------------ACRKSLADSRPRIRGRFARYNDDVVK

Query:  NYPMQWSQGREEEEQQQEENNCGDNWIKYFIDAYSSNLIP
        NYP+QW+  REEE+QQ+E N+CGDNWIKYFID YS+NLIP
Subjt:  NYPMQWSQGREEEEQQQEENNCGDNWIKYFIDAYSSNLIP

XP_011657240.1 zinc finger protein CONSTANS-LIKE 5 [Cucumis sativus]

2.0e-74

68.29

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Query:  MAFSPFLFAASHSSADLAGVDFEWLPDSSIKLWNS-ELSDSCGDGSPTSPPQPLTIPPSNNNFSLHQS-FPLLNP-SLQSNDL--FLQRTFSSSSPPPSA
        MAFSPFL AASHSSADLAGVDF+WLPDSSIKLWNS + SDSCGDGSP SPP+PL I PS NNF LH S FPLLNP SLQSND   FLQRTFSSSSPPPSA
Subjt:  MAFSPFLFAASHSSADLAGVDFEWLPDSSIKLWNS-ELSDSCGDGSPTSPPQPLTIPPSNNNFSLHQS-FPLLNP-SLQSNDL--FLQRTFSSSSPPPSA

Query:  TTNTLVNRLLFPSGDFQKKKNNQRA--ESPASCESSIT-IEGMSR-------------------------------ACRKSLADSRPRIRGRFARYNDDV
          +  +NR LFP GDFQKK NN     ESP SCESSIT IEGMSR                               ACRKSLADSRPRIRGRFARYND+V
Subjt:  TTNTLVNRLLFPSGDFQKKKNNQRA--ESPASCESSIT-IEGMSR-------------------------------ACRKSLADSRPRIRGRFARYNDDV

Query:  VKNYPMQWSQ----GREEEEQQQEENNCGDNWIKYFIDAYSSNLIP
        VKNYP+QW+Q      EEEEQQ+E N+CGDNWIKYFID YS+NLIP
Subjt:  VKNYPMQWSQ----GREEEEQQQEENNCGDNWIKYFIDAYSSNLIP

XP_038902180.1 zinc finger protein CONSTANS-LIKE 5-like [Benincasa hispida]

7.4e-85

74.48

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Query:  MAFSPFLFAASHSSADLAGVDFEWLPDSSI-KLWNSELSDSCGDGSPTSPPQPLTIPPSNNNFSLHQSFPLLNPSLQSNDLFLQRTFSSSSPPPSAT---
        MAFSPFL AASHSSADLAGVDF+WLPDSSI KLWNSE SDSCGDGSPTSPPQ LTI PSNNNF LHQSFP L+PSLQSNDLFLQRTFSSSSPPPSA+   
Subjt:  MAFSPFLFAASHSSADLAGVDFEWLPDSSI-KLWNSELSDSCGDGSPTSPPQPLTIPPSNNNFSLHQSFPLLNPSLQSNDLFLQRTFSSSSPPPSAT---

Query:  -TNTLVNRLLFPSGDFQKKKNNQRAESPASCESSITIEGMSR-------------------------------ACRKSLADSRPRIRGRFARYNDDVVKN
          N L+NR LFP+GDFQ  +NNQRAESP SCESSITIEGMSR                               ACRKSLADSRPRIRGRFARYNDDVVKN
Subjt:  -TNTLVNRLLFPSGDFQKKKNNQRAESPASCESSITIEGMSR-------------------------------ACRKSLADSRPRIRGRFARYNDDVVKN

Query:  YPMQWSQGREEEEQQQEENNCGDNWIKYFIDAYSSNLIP
        YPMQWS G+EEE   QE NNCGDNWIKYFIDAYS+NLIP
Subjt:  YPMQWSQGREEEEQQQEENNCGDNWIKYFIDAYSSNLIP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KG14 CCT domain-containing protein

9.8e-75

68.29

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Query:  MAFSPFLFAASHSSADLAGVDFEWLPDSSIKLWNS-ELSDSCGDGSPTSPPQPLTIPPSNNNFSLHQS-FPLLNP-SLQSNDL--FLQRTFSSSSPPPSA
        MAFSPFL AASHSSADLAGVDF+WLPDSSIKLWNS + SDSCGDGSP SPP+PL I PS NNF LH S FPLLNP SLQSND   FLQRTFSSSSPPPSA
Subjt:  MAFSPFLFAASHSSADLAGVDFEWLPDSSIKLWNS-ELSDSCGDGSPTSPPQPLTIPPSNNNFSLHQS-FPLLNP-SLQSNDL--FLQRTFSSSSPPPSA

Query:  TTNTLVNRLLFPSGDFQKKKNNQRA--ESPASCESSIT-IEGMSR-------------------------------ACRKSLADSRPRIRGRFARYNDDV
          +  +NR LFP GDFQKK NN     ESP SCESSIT IEGMSR                               ACRKSLADSRPRIRGRFARYND+V
Subjt:  TTNTLVNRLLFPSGDFQKKKNNQRA--ESPASCESSIT-IEGMSR-------------------------------ACRKSLADSRPRIRGRFARYNDDV

Query:  VKNYPMQWSQ----GREEEEQQQEENNCGDNWIKYFIDAYSSNLIP
        VKNYP+QW+Q      EEEEQQ+E N+CGDNWIKYFID YS+NLIP
Subjt:  VKNYPMQWSQ----GREEEEQQQEENNCGDNWIKYFIDAYSSNLIP

A0A1S3CK56 zinc finger protein CONSTANS-LIKE 1 isoform X2

3.6e-77

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Query:  MAFSPFLFAASHSSADLAGVDFE-WLPDSSIKLWNSELSDSCGDGSPTSPPQPLTIPPSNNNFSLHQSFPLLN-PSLQS-NDLFLQRTFSSS-SPPPSAT
        MAFSPFL AASHSSAD+AGVDF+ WLPDSSIKLWNSE SDSCGDGSP SPP+PL I PS NNF LHQSFPLLN  SLQS ND FLQRTFSSS SPPPSA 
Subjt:  MAFSPFLFAASHSSADLAGVDFE-WLPDSSIKLWNSELSDSCGDGSPTSPPQPLTIPPSNNNFSLHQSFPLLN-PSLQS-NDLFLQRTFSSS-SPPPSAT

Query:  TNTLVNRLLFPSGDFQKKKNNQRA-ESPASCESSIT-IEGMSR-------------------------------ACRKSLADSRPRIRGRFARYNDDVVK
         +  +NR LFP+GDFQKK NN+R  ESP SCESSIT IEGMSR                               ACRKSLADSRPRIRGRFARYND+VVK
Subjt:  TNTLVNRLLFPSGDFQKKKNNQRA-ESPASCESSIT-IEGMSR-------------------------------ACRKSLADSRPRIRGRFARYNDDVVK

Query:  NYPMQWSQGREEEEQQQEENNCGDNWIKYFIDAYSSNLIP
        NYP+QW+  REEE+QQ+E N+CGDNWIKYFID YS+NLIP
Subjt:  NYPMQWSQGREEEEQQQEENNCGDNWIKYFIDAYSSNLIP

A0A1S3CK62 zinc finger protein CONSTANS-LIKE 1 isoform X1

3.0e-76

69.29

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Query:  MAFSPFLFAASHSSADLAGVDFE-WLPDSSIKLWNSELSDSCGDGSPTSPPQPLTIPPSNNNFSLHQSFPLLN-PSLQS-NDLFLQRTFSSS-SPPPSAT
        MAFSPFL AASHSSAD+AGVDF+ WLPDSSIKLWNSE SDSCGDGSP SPP+PL I PS NNF LHQSFPLLN  SLQS ND FLQRTFSSS SPPPSA 
Subjt:  MAFSPFLFAASHSSADLAGVDFE-WLPDSSIKLWNSELSDSCGDGSPTSPPQPLTIPPSNNNFSLHQSFPLLN-PSLQS-NDLFLQRTFSSS-SPPPSAT

Query:  TNTLVNRLLFPSGDFQKKKNNQRA--ESPASCESSIT-IEGMSR-------------------------------ACRKSLADSRPRIRGRFARYNDDVV
         +  +NR LFP+GDFQ+KKNN     ESP SCESSIT IEGMSR                               ACRKSLADSRPRIRGRFARYND+VV
Subjt:  TNTLVNRLLFPSGDFQKKKNNQRA--ESPASCESSIT-IEGMSR-------------------------------ACRKSLADSRPRIRGRFARYNDDVV

Query:  KNYPMQWSQGREEEEQQQEENNCGDNWIKYFIDAYSSNLIP
        KNYP+QW+  REEE+QQ+E N+CGDNWIKYFID YS+NLIP
Subjt:  KNYPMQWSQGREEEEQQQEENNCGDNWIKYFIDAYSSNLIP

A0A5A7SW55 Zinc finger protein CONSTANS-LIKE 1 isoform X1

4.1e-81

79.52

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Query:  MAFSPFLFAASHSSADLAGVDFE-WLPDSSIKLWNSELSDSCGDGSPTSPPQPLTIPPSNNNFSLHQSFPLLN-PSLQS-NDLFLQRTFSSS-SPPPSAT
        MAFSPFL AASHSSAD+AGVDF+ WLPDSSIKLWNSE SDSCGDGSP SPP+PL I PS NNF LHQSFPLLN  SLQS ND FLQRTFSSS SPPPSA 
Subjt:  MAFSPFLFAASHSSADLAGVDFE-WLPDSSIKLWNSELSDSCGDGSPTSPPQPLTIPPSNNNFSLHQSFPLLN-PSLQS-NDLFLQRTFSSS-SPPPSAT

Query:  TNTLVNRLLFPSGDFQKKKNNQRA--ESPASCESSIT-IEGMSRACRKSLADSRPRIRGRFARYNDDVVKNYPMQWSQGREEEEQQQEENNCGDNWIKYF
         +  +NR LFP+GDFQ+KKNN     ESP SCESSIT IEGMSRACRKSLADSRPRIRGRFARYND+VVKNYP+QW+  REEE+QQ+E N+CGDNWIKYF
Subjt:  TNTLVNRLLFPSGDFQKKKNNQRA--ESPASCESSIT-IEGMSRACRKSLADSRPRIRGRFARYNDDVVKNYPMQWSQGREEEEQQQEENNCGDNWIKYF

Query:  IDAYSSNLIP
        ID YS+NLIP
Subjt:  IDAYSSNLIP

A0A5D3CRZ2 Zinc finger protein CONSTANS-LIKE 1 isoform X1

3.0e-76

69.29

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Query:  MAFSPFLFAASHSSADLAGVDFE-WLPDSSIKLWNSELSDSCGDGSPTSPPQPLTIPPSNNNFSLHQSFPLLN-PSLQS-NDLFLQRTFSSS-SPPPSAT
        MAFSPFL AASHSSAD+AGVDF+ WLPDSSIKLWNSE SDSCGDGSP SPP+PL I PS NNF LHQSFPLLN  SLQS ND FLQRTFSSS SPPPSA 
Subjt:  MAFSPFLFAASHSSADLAGVDFE-WLPDSSIKLWNSELSDSCGDGSPTSPPQPLTIPPSNNNFSLHQSFPLLN-PSLQS-NDLFLQRTFSSS-SPPPSAT

Query:  TNTLVNRLLFPSGDFQKKKNNQRA--ESPASCESSIT-IEGMSR-------------------------------ACRKSLADSRPRIRGRFARYNDDVV
         +  +NR LFP+GDFQ+KKNN     ESP SCESSIT IEGMSR                               ACRKSLADSRPRIRGRFARYND+VV
Subjt:  TNTLVNRLLFPSGDFQKKKNNQRA--ESPASCESSIT-IEGMSR-------------------------------ACRKSLADSRPRIRGRFARYNDDVV

Query:  KNYPMQWSQGREEEEQQQEENNCGDNWIKYFIDAYSSNLIP
        KNYP+QW+  REEE+QQ+E N+CGDNWIKYFID YS+NLIP
Subjt:  KNYPMQWSQGREEEEQQQEENNCGDNWIKYFIDAYSSNLIP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G63820.1 CCT motif family protein

5.2e-04

31.21

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Query:  LWNSELSDSCGDGSPTSPPQPLTIPPSNNNFSLHQSFPLLNPSLQS--NDLFLQRTFSSSSPPPSATTNTLVNRLLFPSGDFQ-----KKKNNQRAESPA
        L+NS       + S     Q L   P ++ FS H         LQ+   D   QR++SS     S+ T          SGD Q     +  + +R E  +
Subjt:  LWNSELSDSCGDGSPTSPPQPLTIPPSNNNFSLHQSFPLLNPSLQS--NDLFLQRTFSSSSPPPSATTNTLVNRLLFPSGDFQ-----KKKNNQRAESPA

Query:  SCESSITIEGMSR----ACRKSLADSRPRIRGRFARYNDDVVKNYPMQWSQGREEEE
           +  T    ++    ACRK+LAD+RPR+RGRFAR ND+V +N  +  S  R+E +
Subjt:  SCESSITIEGMSR----ACRKSLADSRPRIRGRFARYNDDVVKNYPMQWSQGREEEE

AT5G41380.1 CCT motif family protein

1.4e-04

39.25

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Query:  PSNNNFSLHQSFPLLNPSLQSNDLFLQRTFSSSSPPPSATTNTLVNRLLFPSGDFQKKKNNQRAESPASCESSITIEGMSRACRKSLADSRPRIRGRFAR
        P N  FS           LQ N++ +QR+  +S+ P S   N  V R    S + +K+K ++          + TI+    ACRK+LADSRPRIRGRFAR
Subjt:  PSNNNFSLHQSFPLLNPSLQSNDLFLQRTFSSSSPPPSATTNTLVNRLLFPSGDFQKKKNNQRAESPASCESSITIEGMSRACRKSLADSRPRIRGRFAR

Query:  YNDDVVK
         ND+VV+
Subjt:  YNDDVVK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCCTTTTCCCCATTTCTCTTTGCCGCCTCACATTCCTCCGCCGACCTTGCAGGCGTTGATTTTGAATGGTTGCCCGATTCTTCCATCAAGCTTTGGAACTCTGAACT
TTCCGACAGTTGTGGCGACGGTTCACCGACTTCTCCGCCGCAACCCCTCACAATCCCTCCCTCAAATAACAATTTTTCATTACACCAATCCTTTCCTCTCCTTAATCCTT
CTCTCCAATCCAATGATTTATTTCTTCAACGCACATTTTCTTCCTCCTCGCCACCACCCTCCGCCACCACCAATACTCTTGTCAACCGGCTGCTCTTCCCCTCCGGCGAC
TTTCAGAAGAAGAAGAATAATCAAAGAGCAGAGAGTCCAGCTTCATGTGAAAGTAGTATCACCATTGAAGGAATGAGCAGAGCTTGTAGGAAGTCGTTGGCGGATAGTCG
ACCACGAATCAGAGGACGATTTGCGAGATACAACGACGACGTAGTGAAGAATTATCCGATGCAATGGAGTCAAGGGCGAGAAGAGGAAGAACAACAACAAGAAGAAAATA
ATTGCGGTGATAATTGGATCAAGTATTTCATTGATGCATATTCCTCGAACCTTATTCCATGA

mRNA sequence

Show/hide mRNA sequence

CGAGCTTCCTCTTCCCTCTCTCTCACGCGCCTTCTGATCGGATCCTTTTCGTATTCCTCACGCGCCGTCGTCCCTCTCATGGCCTTTTCCCCATTTCTCTTTGCCGCCTC
ACATTCCTCCGCCGACCTTGCAGGCGTTGATTTTGAATGGTTGCCCGATTCTTCCATCAAGCTTTGGAACTCTGAACTTTCCGACAGTTGTGGCGACGGTTCACCGACTT
CTCCGCCGCAACCCCTCACAATCCCTCCCTCAAATAACAATTTTTCATTACACCAATCCTTTCCTCTCCTTAATCCTTCTCTCCAATCCAATGATTTATTTCTTCAACGC
ACATTTTCTTCCTCCTCGCCACCACCCTCCGCCACCACCAATACTCTTGTCAACCGGCTGCTCTTCCCCTCCGGCGACTTTCAGAAGAAGAAGAATAATCAAAGAGCAGA
GAGTCCAGCTTCATGTGAAAGTAGTATCACCATTGAAGGAATGAGCAGAGCTTGTAGGAAGTCGTTGGCGGATAGTCGACCACGAATCAGAGGACGATTTGCGAGATACA
ACGACGACGTAGTGAAGAATTATCCGATGCAATGGAGTCAAGGGCGAGAAGAGGAAGAACAACAACAAGAAGAAAATAATTGCGGTGATAATTGGATCAAGTATTTCATT
GATGCATATTCCTCGAACCTTATTCCATGA

Protein sequence

Show/hide protein sequence

MAFSPFLFAASHSSADLAGVDFEWLPDSSIKLWNSELSDSCGDGSPTSPPQPLTIPPSNNNFSLHQSFPLLNPSLQSNDLFLQRTFSSSSPPPSATTNTLVNRLLFPSGD
FQKKKNNQRAESPASCESSITIEGMSRACRKSLADSRPRIRGRFARYNDDVVKNYPMQWSQGREEEEQQQEENNCGDNWIKYFIDAYSSNLIP

Lsi10G013310 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome