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Lsi10G013420 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G013420
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA repair protein RAD51 homolog 4
Genome locationchr10:17665967..17666954
RNA-Seq ExpressionLsi10G013420
SyntenyLsi10G013420
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0016444 - somatic cell DNA recombination (biological process)
GO:1900426 - positive regulation of defense response to bacterium (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domainsIPR013632 - DNA recombination and repair protein Rad51-like, C-terminal
IPR020588 - DNA recombination and repair protein RecA-like, ATP-binding domain
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031743457.1 DNA repair protein RAD51 homolog 4 isoform X2 [Cucumis sativus]2.8e-5690.32Show/hide
Query:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL
        MAPLKSLE++CP IDSNF TFCASHGIFTVEDFLI DLYVLAAFAEQQPASEKLKQGITQILSIIDA ERQPW+NGLELLEDARENK+ILS  FEG+D+L
Subjt:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL

Query:  LGGGLREGQLTEIVGPSSSGKTQV
        LGGGLREGQLTEIVGPSSSGKTQV
Subjt:  LGGGLREGQLTEIVGPSSSGKTQV

XP_031743458.1 DNA repair protein RAD51 homolog 4 isoform X3 [Cucumis sativus]2.8e-5690.32Show/hide
Query:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL
        MAPLKSLE++CP IDSNF TFCASHGIFTVEDFLI DLYVLAAFAEQQPASEKLKQGITQILSIIDA ERQPW+NGLELLEDARENK+ILS  FEG+D+L
Subjt:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL

Query:  LGGGLREGQLTEIVGPSSSGKTQV
        LGGGLREGQLTEIVGPSSSGKTQV
Subjt:  LGGGLREGQLTEIVGPSSSGKTQV

XP_031743461.1 DNA repair protein RAD51 homolog 4 isoform X6 [Cucumis sativus]2.8e-5690.32Show/hide
Query:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL
        MAPLKSLE++CP IDSNF TFCASHGIFTVEDFLI DLYVLAAFAEQQPASEKLKQGITQILSIIDA ERQPW+NGLELLEDARENK+ILS  FEG+D+L
Subjt:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL

Query:  LGGGLREGQLTEIVGPSSSGKTQV
        LGGGLREGQLTEIVGPSSSGKTQV
Subjt:  LGGGLREGQLTEIVGPSSSGKTQV

XP_038901757.1 DNA repair protein RAD51 homolog 4 isoform X1 [Benincasa hispida]2.9e-6197.58Show/hide
Query:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL
        MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLY LAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILST FEGID+L
Subjt:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL

Query:  LGGGLREGQLTEIVGPSSSGKTQV
        LGGGLREGQLTEIVGPSSSGKTQV
Subjt:  LGGGLREGQLTEIVGPSSSGKTQV

XP_038901758.1 DNA repair protein RAD51 homolog 4 isoform X2 [Benincasa hispida]2.9e-6197.58Show/hide
Query:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL
        MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLY LAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILST FEGID+L
Subjt:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL

Query:  LGGGLREGQLTEIVGPSSSGKTQV
        LGGGLREGQLTEIVGPSSSGKTQV
Subjt:  LGGGLREGQLTEIVGPSSSGKTQV

TrEMBL top hitse value%identityAlignment
A0A0A0KCU0 RECA_2 domain-containing protein1.4e-5690.32Show/hide
Query:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL
        MAPLKSLE++CP IDSNF TFCASHGIFTVEDFLI DLYVLAAFAEQQPASEKLKQGITQILSIIDA ERQPW+NGLELLEDARENK+ILS  FEG+D+L
Subjt:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL

Query:  LGGGLREGQLTEIVGPSSSGKTQV
        LGGGLREGQLTEIVGPSSSGKTQV
Subjt:  LGGGLREGQLTEIVGPSSSGKTQV

A0A1S3BJI2 DNA repair protein RAD51 homolog 4 isoform X24.4e-5588.71Show/hide
Query:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL
        MAPLK LE++ P IDSNF TFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIID  ERQPW+NGLELLEDARENKHILS  FE +D+L
Subjt:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL

Query:  LGGGLREGQLTEIVGPSSSGKTQV
        LGGGLREGQLTEIVGPSSSGKTQV
Subjt:  LGGGLREGQLTEIVGPSSSGKTQV

A0A6J1D466 DNA repair protein RAD51 homolog 4 isoform X26.4e-5487.9Show/hide
Query:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL
        MAPLKSLE+V P+IDSNFQ FC+SHGIFTVEDFL+HDLYVLAAFAEQQPASEKLKQGIT++LSIID A+RQPWMNGLELLEDA ENKHILST  EG+D L
Subjt:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL

Query:  LGGGLREGQLTEIVGPSSSGKTQV
        LGGGLREGQLTEIVGPSSSGKTQV
Subjt:  LGGGLREGQLTEIVGPSSSGKTQV

A0A6J1G6S8 DNA repair protein RAD51 homolog 48.4e-5487.9Show/hide
Query:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL
        MAPLKSLEQ+ P+ID+ FQ+FCASHGIFTVEDFLIHDLYVLAAFAEQQP SEKLKQGITQILS+I+ AERQ WMNGLELLEDARENKH+LST FEG+D L
Subjt:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL

Query:  LGGGLREGQLTEIVGPSSSGKTQV
        LGGGLREGQLTEIVGPSSSGKTQV
Subjt:  LGGGLREGQLTEIVGPSSSGKTQV

A0A6J1L7F6 DNA repair protein RAD51 homolog 42.2e-5488.71Show/hide
Query:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL
        MAPLKSLEQ+ P+ID+ FQ+FCASHGIFTVEDFLIHDLYVLAAFAEQQP SEKLKQGITQILS+I+ AERQPWMNGLELLEDARENKH LST FEG+D L
Subjt:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL

Query:  LGGGLREGQLTEIVGPSSSGKTQV
        LGGGLREGQLTEIVGPSSSGKTQV
Subjt:  LGGGLREGQLTEIVGPSSSGKTQV

SwissProt top hitse value%identityAlignment
O55230 DNA repair protein RAD51 homolog 42.4e-0549.02Show/hide
Query:  MNGLELLEDARENKHILSTDFEGIDILLGGGLREGQLTEIVGPSSSGKTQV
        +NG +L E+ + +  ILST    +D LL  GL  G++TEIVG   SGKTQV
Subjt:  MNGLELLEDARENKHILSTDFEGIDILLGGGLREGQLTEIVGPSSSGKTQV

O75771 DNA repair protein RAD51 homolog 49.6e-0734.78Show/hide
Query:  VCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDILLGGGLREGQ
        +CP +         SH I TV D +  D   L   A++   S K    + ++L    +A     +NG +L E+ + +  ILST    +D LL  GL  G+
Subjt:  VCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDILLGGGLREGQ

Query:  LTEIVGPSSSGKTQV
        +TEIVG   SGKTQV
Subjt:  LTEIVGPSSSGKTQV

Q2HJ51 DNA repair protein RAD51 homolog 44.3e-0734.78Show/hide
Query:  VCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDILLGGGLREGQ
        +CP +  +      S GI TV D +  D   L   A++   S K    + ++L    +A      NG +L E+ + +  ILST    +D LL  GL  G+
Subjt:  VCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDILLGGGLREGQ

Query:  LTEIVGPSSSGKTQV
        +TEIVG   SGKTQV
Subjt:  LTEIVGPSSSGKTQV

Q9LQQ2 DNA repair protein RAD51 homolog 48.9e-3760.47Show/hide
Query:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL
        MAPLK LE+  P+ID+ FQ FCASHGI T+EDFL+HDLY L AF+++Q  +++LK+GIT ILS+I+  + +P +NGL+LLED   NKH LST  +  D L
Subjt:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL

Query:  LGGGLREGQLTEIVGPSSSGKTQVASWAS
        L GG REGQLTE+VGPSSSGKTQ    A+
Subjt:  LGGGLREGQLTEIVGPSSSGKTQVASWAS

Q9SK02 DNA repair protein RAD51 homolog 25.3e-0540.58Show/hide
Query:  ITQILSIIDAAERQPWMNGLELLEDARENKHI---LSTDFEGIDILLGGGLREGQLTEIVGPSSSGKTQ
        I   +S I  A   P  +   LLE   EN+H+   L T  +G+D  L GG+  G LTE+VGP   GK+Q
Subjt:  ITQILSIIDAAERQPWMNGLELLEDARENKHI---LSTDFEGIDILLGGGLREGQLTEIVGPSSSGKTQ

Arabidopsis top hitse value%identityAlignment
AT1G07745.1 homolog of RAD51 D6.4e-3860.47Show/hide
Query:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL
        MAPLK LE+  P+ID+ FQ FCASHGI T+EDFL+HDLY L AF+++Q  +++LK+GIT ILS+I+  + +P +NGL+LLED   NKH LST  +  D L
Subjt:  MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDIL

Query:  LGGGLREGQLTEIVGPSSSGKTQVASWAS
        L GG REGQLTE+VGPSSSGKTQ    A+
Subjt:  LGGGLREGQLTEIVGPSSSGKTQVASWAS

AT1G07745.2 homolog of RAD51 D7.3e-2659Show/hide
Query:  VEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDILLGGGLREGQLTEIVGPSSSGKTQVASWAS
        VEDFL+HDLY L AF+++Q  +++LK+GIT ILS+I+  + +P +NGL+LLED   NKH LST  +  D LL GG REGQLTE+VGPSSSGKTQ    A+
Subjt:  VEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDILLGGGLREGQLTEIVGPSSSGKTQVASWAS

AT2G28560.1 DNA repair (Rad51) family protein3.8e-0640.58Show/hide
Query:  ITQILSIIDAAERQPWMNGLELLEDARENKHI---LSTDFEGIDILLGGGLREGQLTEIVGPSSSGKTQ
        I   +S I  A   P  +   LLE   EN+H+   L T  +G+D  L GG+  G LTE+VGP   GK+Q
Subjt:  ITQILSIIDAAERQPWMNGLELLEDARENKHI---LSTDFEGIDILLGGGLREGQLTEIVGPSSSGKTQ

AT2G28560.2 DNA repair (Rad51) family protein3.8e-0640.58Show/hide
Query:  ITQILSIIDAAERQPWMNGLELLEDARENKHI---LSTDFEGIDILLGGGLREGQLTEIVGPSSSGKTQ
        I   +S I  A   P  +   LLE   EN+H+   L T  +G+D  L GG+  G LTE+VGP   GK+Q
Subjt:  ITQILSIIDAAERQPWMNGLELLEDARENKHI---LSTDFEGIDILLGGGLREGQLTEIVGPSSSGKTQ

AT2G28560.3 DNA repair (Rad51) family protein3.8e-0640.58Show/hide
Query:  ITQILSIIDAAERQPWMNGLELLEDARENKHI---LSTDFEGIDILLGGGLREGQLTEIVGPSSSGKTQ
        I   +S I  A   P  +   LLE   EN+H+   L T  +G+D  L GG+  G LTE+VGP   GK+Q
Subjt:  ITQILSIIDAAERQPWMNGLELLEDARENKHI---LSTDFEGIDILLGGGLREGQLTEIVGPSSSGKTQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCATTGAAGTCTCTGGAGCAGGTCTGCCCCCTCATCGACTCTAATTTCCAGACATTTTGTGCTTCACACGGCATTTTCACTGTGGAGGATTTCCTCATCCATGA
CCTATATGTTTTAGCTGCTTTTGCAGAGCAACAGCCTGCATCAGAGAAATTAAAGCAGGGGATTACCCAAATCCTTTCAATAATTGACGCTGCTGAGCGACAACCATGGA
TGAACGGTTTGGAGCTTTTGGAAGATGCTCGAGAAAACAAGCATATTCTGTCCACTGATTTTGAAGGGATTGATATTTTGCTTGGAGGTGGACTACGCGAGGGACAGTTG
ACTGAAATTGTTGGGCCATCGTCTTCTGGTAAAACTCAGGTAGCTAGTTGGGCATCTTTTGGCTGTGATGAATTTTGCATTTGA
mRNA sequenceShow/hide mRNA sequence
CAAATGTATGAACTCTAACCTTTTGCTTATGTCACATCCCATTATTATTATTTTTATAACGTATCGTGTTAGAGATGATCACATCTACCGTAGCAGTAATACGATAGTCA
TCTTTATCATAAATAAATTAGAGATCGCAATAGGAATTGCCATTGTGAACTACCATAGATATAACCCTCCCTAACCGTCAAATAAATTTAGTGACCTTTTAACTCCATTT
TTTTAAATAGAATAAAAATATATCTTTTAAAACCTCATACACTTAAAAATGTATTGGGCACTAAACACTACGTAGGTTTGCCATTGAAATGATTCGAACCAAACGCAGCC
CTAAAATCTTTGGAGCGGGAAAAAGAAAATGGCGCCATTGAAGTCTCTGGAGCAGGTCTGCCCCCTCATCGACTCTAATTTCCAGACATTTTGTGCTTCACACGGCATTT
TCACTGTGGAGGATTTCCTCATCCATGACCTATATGTTTTAGCTGCTTTTGCAGAGCAACAGCCTGCATCAGAGAAATTAAAGCAGGGGATTACCCAAATCCTTTCAATA
ATTGACGCTGCTGAGCGACAACCATGGATGAACGGTTTGGAGCTTTTGGAAGATGCTCGAGAAAACAAGCATATTCTGTCCACTGATTTTGAAGGGATTGATATTTTGCT
TGGAGGTGGACTACGCGAGGGACAGTTGACTGAAATTGTTGGGCCATCGTCTTCTGGTAAAACTCAGGTAGCTAGTTGGGCATCTTTTGGCTGTGATGAATTTTGCATTT
GA
Protein sequenceShow/hide protein sequence
MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDILLGGGLREGQL
TEIVGPSSSGKTQVASWASFGCDEFCI