; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G013870 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G013870
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRab5-interacting
Genome locationchr10:17988689..17991786
RNA-Seq ExpressionLsi10G013870
SyntenyLsi10G013870
Gene Ontology termsGO:0006996 - organelle organization (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR010742 - Rab5-interacting protein
IPR029008 - Rab5-interacting protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061904.1 Rab5-interacting [Cucumis melo var. makuwa]4.2e-5999.15Show/hide
Query:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEAKPVKFNLHQHQDHQNGHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFL
        HGALLQEGLFASITLFL
Subjt:  HGALLQEGLFASITLFL
XP_004143124.1 uncharacterized protein RAB5IF homolog [Cucumis sativus]5.5e-5998.29Show/hide
Query:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEAKPVKFNLHQHQDHQNGHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAV+LGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFL
        HGALLQEGLFASITLFL
Subjt:  HGALLQEGLFASITLFL
XP_008464121.1 PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis melo]4.2e-5999.15Show/hide
Query:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEAKPVKFNLHQHQDHQNGHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFL
        HGALLQEGLFASITLFL
Subjt:  HGALLQEGLFASITLFL
XP_023532323.1 uncharacterized protein C20orf24-like isoform X1 [Cucurbita pepo subsp. pepo]4.2e-5988.64Show/hide
Query:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEA PVKFNLHQHQ+HQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWG+IPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLKYNAPLTEHFFRKAL
        HGALLQEGLFASITLFL+  A L+   F + +
Subjt:  HGALLQEGLFASITLFLKYNAPLTEHFFRKAL
XP_038900616.1 respirasome Complex Assembly Factor 1-like [Benincasa hispida]1.9e-5999.15Show/hide
Query:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKE+KPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFL
        HGALLQEGLFASITLFL
Subjt:  HGALLQEGLFASITLFL
TrEMBL top hitse value%identityAlignment
A0A0A0KFE5 Uncharacterized protein2.7e-5998.29Show/hide
Query:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEAKPVKFNLHQHQDHQNGHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAV+LGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFL
        HGALLQEGLFASITLFL
Subjt:  HGALLQEGLFASITLFL
A0A1S4E4J0 uncharacterized protein C20orf24 homolog2.1e-5999.15Show/hide
Query:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEAKPVKFNLHQHQDHQNGHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFL
        HGALLQEGLFASITLFL
Subjt:  HGALLQEGLFASITLFL
A0A5A7V3N1 Rab5-interacting2.1e-5999.15Show/hide
Query:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEAKPVKFNLHQHQDHQNGHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFL
        HGALLQEGLFASITLFL
Subjt:  HGALLQEGLFASITLFL
A0A5D3DK85 Rab5-interacting2.1e-5999.15Show/hide
Query:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEAKPVKFNLHQHQDHQNGHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFL
        HGALLQEGLFASITLFL
Subjt:  HGALLQEGLFASITLFL
A0A6J1G7Q9 uncharacterized protein C20orf24-like isoform X16.0e-5996.61Show/hide
Query:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEA PVKFNLHQHQ+HQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWG+IPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLK
        HGALLQEGLFASITLFL+
Subjt:  HGALLQEGLFASITLFLK
SwissProt top hitse value%identityAlignment
Q9BUV8 Respirasome Complex Assembly Factor 11.3e-1542Show/hide
Query:  NGHLAPFKLAKLFDPEASW-DKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFL
        NG L     +K+   +A+W DKD+  DV++W RQ +AVVLG++WG +PL G +    F  I+  V+Y Y++  L++DEEE+GG   L +EG   S  LF+
Subjt:  NGHLAPFKLAKLFDPEASW-DKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFL
Q9CQT9 Respirasome Complex Assembly Factor 13.0e-1541Show/hide
Query:  NGHLAPFKLAKLFDPEASW-DKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFL
        NG L     +K+   +A+W DKD+  DV++W RQ +A+VLG++WG +PL G +    F  I+  V+Y Y++  L++DEEE+GG   L +EG   S  LF+
Subjt:  NGHLAPFKLAKLFDPEASW-DKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFL
Arabidopsis top hitse value%identityAlignment
AT2G29020.1 Rab5-interacting family protein7.0e-4468.6Show/hide
Query:  MKEAKPVKFNLHQHQD----HQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEE
        MKE K  K +  Q Q     HQN HL  F  AKLFD EASWDKDQLGDVLHWIRQ V ++ GLLWG+IPLVGGIW L+FLAIS+ +VYGYYA++LK+DEE
Subjt:  MKEAKPVKFNLHQHQD----HQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEE

Query:  EFGGHGALLQEGLFASITLFL
        +FGGH ALLQ+GLFAS++LFL
Subjt:  EFGGHGALLQEGLFASITLFL
AT5G59410.1 Rab5-interacting family protein2.5e-4977.12Show/hide
Query:  MKEAKPVKFN-LHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFG
        MKE+K  K N L Q ++HQN HL+P KLAKLFDP+ASWDKDQLGDVLHWIRQ V ++ GLLWGSIPLVGGIW ++FLAIS+ +VYGYYAMILKVDEE+FG
Subjt:  MKEAKPVKFN-LHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFG

Query:  GHGALLQEGLFASITLFL
        GH ALLQEGLFAS+TLFL
Subjt:  GHGALLQEGLFASITLFL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAAGCAAAACCAGTTAAGTTCAATCTGCATCAGCATCAAGATCACCAAAATGGTCACTTGGCCCCATTCAAGCTCGCTAAATTGTTCGATCCAGAGGCCTCTTG
GGACAAGGACCAACTAGGAGATGTTTTGCACTGGATTCGACAAGCAGTGGCCGTTGTACTTGGACTGCTGTGGGGATCCATACCTTTGGTTGGAGGCATCTGGTTTCTAA
TTTTCCTGGCGATATCAACCAGCGTTGTATATGGATACTATGCAATGATATTAAAAGTCGATGAAGAAGAATTTGGAGGTCATGGAGCGCTCCTCCAAGAGGGCCTTTTT
GCTTCTATAACTCTCTTTCTGAAATACAATGCACCATTAACCGAACACTTCTTCAGGAAGGCCTTGTTTTGCTATCAACTTCAGTTCGTGCAAGATCAATTTACTGCTTG
CTTGGATTCTCGTATACAGCTTGGCACACTTTTGATCGGCGAAGAATGA
mRNA sequenceShow/hide mRNA sequence
CATCTTCCGCACGTGCTCCGAAATCCAAAGCCGAAACTGAAAAAACCAGTCGAGAAAGACGATTTGCAGTGATTTGACCGCAAATGAATCCTGCAAATTGAAATTTCTCC
CTCGTTGATCCAACCGTGTCTCTCTATCTTCTTCCCTGAAATCCTTGGGAGTTGCTGAATACAGTGTTTCTATTCCGACTGGAGCATTTTATCTGCACTTTTTTCCGGAA
TCTAGATCTAAGCTTACTGTAGATTGGGTTGTTTCTGTTCTATTTTCCCGAAGAGTGATTGATTGAATTATCCGGTATGAAAGAAGCAAAACCAGTTAAGTTCAATCTGC
ATCAGCATCAAGATCACCAAAATGGTCACTTGGCCCCATTCAAGCTCGCTAAATTGTTCGATCCAGAGGCCTCTTGGGACAAGGACCAACTAGGAGATGTTTTGCACTGG
ATTCGACAAGCAGTGGCCGTTGTACTTGGACTGCTGTGGGGATCCATACCTTTGGTTGGAGGCATCTGGTTTCTAATTTTCCTGGCGATATCAACCAGCGTTGTATATGG
ATACTATGCAATGATATTAAAAGTCGATGAAGAAGAATTTGGAGGTCATGGAGCGCTCCTCCAAGAGGGCCTTTTTGCTTCTATAACTCTCTTTCTGAAATACAATGCAC
CATTAACCGAACACTTCTTCAGGAAGGCCTTGTTTTGCTATCAACTTCAGTTCGTGCAAGATCAATTTACTGCTTGCTTGGATTCTCGTATACAGCTTGGCACACTTTTG
ATCGGCGAAGAATGATTTTGCATCCATGAAATTACTTGGTGAAGTTCCAACAATGAACTTAATTATACTTGATGCCCTGCTCATTTACGATTGCTTCTAATTGGTGGCAC
AAATTTTTTTAACATTCATCATGTTGAACAAATTGATTTAGCAAAGCAGGAAAACTTTAGCATATGATATATGGTGATAGATTGATTTTCGATCTGAAATTCCCTGTTGA
CATTCTCCAAAGGCCACATAGAGATGGGCAATGGATGTAATCCTTGTTAAAATTAATTCCTTGTATTGTCATCAATTAATAGCTAGTTGGACACCAACAATGTTGTGTAC
ATTTGATGATCTAGGGTGAAACCCACTTGTTCTTGAGTAATGGTTTCTTTTTTCCTGCACCATCCTAAGGGAAATCAGCAAGCAGTCTGTGCCTTGGAAATATGAAGATG
GTAAAATGATACGACCTGCAGTATCGAACATTACTTTCCGGTGCGATTGAATGATTTTTCAGCTGAAATAATCTCTTCAAATGATTGATTGATTTTTGGTGCATACTTCA
TCAAGACTGCGGAGGTGGGCGATTCGAAGTTTTTATAACTAACTTTTGTTAGTTGATTTAGCCCTATTGAATAATGTTATTGATGATAGTTCCACCTAGAAATGTTCACT
TTCTTCGTTTAGCCAAGGAATGGAGTCGGAAGTGGGGAAATTTTTTTTTCAAAAGCTAAATGAGGAAGGAGACGGGGACGGGGACGGGGAATGCATTCCCCCTCCCGCTT
TGTTAGGCTTTTTTTTATTATATTTATTATAGTAATTTAATGTTATGTTGTTTTTATTTTATAAATATTATCTTTAATTTTCAAGATTTATTGTTTAATGGTCAAAATAA
TGAATATATTTGAATTAGTGTAAAAAAAATGATATGTTTAAATTTCAATAAATTTAAATTATATATA
Protein sequenceShow/hide protein sequence
MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLF
ASITLFLKYNAPLTEHFFRKALFCYQLQFVQDQFTACLDSRIQLGTLLIGEE